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Search of human proteins with 239748932
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
sapiens]
(162 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo ... 347 3e-96
gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo ... 314 2e-86
gi|239754431 PREDICTED: hypothetical protein [Homo sapiens] 191 2e-49
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 40 9e-04
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 40 9e-04
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 39 0.002
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 39 0.002
gi|171543895 ataxin 2 [Homo sapiens] 38 0.004
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 37 0.007
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 37 0.007
gi|14249622 ajuba isoform 1 [Homo sapiens] 37 0.007
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 37 0.010
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 36 0.017
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 36 0.017
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 36 0.017
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 35 0.022
gi|4758216 dishevelled 2 [Homo sapiens] 35 0.022
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 35 0.028
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 35 0.028
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 35 0.028
gi|26051231 lactamase, beta isoform a [Homo sapiens] 35 0.037
gi|26051233 lactamase, beta isoform b [Homo sapiens] 35 0.037
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 35 0.037
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 35 0.037
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 35 0.037
gi|12751477 forkhead box L2 [Homo sapiens] 34 0.048
gi|239756774 PREDICTED: hypothetical protein [Homo sapiens] 34 0.048
gi|239751265 PREDICTED: hypothetical protein [Homo sapiens] 34 0.048
>gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
sapiens]
Length = 162
Score = 347 bits (889), Expect = 3e-96
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
Query: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG
Sbjct: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
Query: 121 HASQCGLASPQSTAPPARRLGTGGLTRRGEKSPWGPRFPTNS 162
HASQCGLASPQSTAPPARRLGTGGLTRRGEKSPWGPRFPTNS
Sbjct: 121 HASQCGLASPQSTAPPARRLGTGGLTRRGEKSPWGPRFPTNS 162
>gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo
sapiens]
Length = 192
Score = 314 bits (805), Expect = 2e-86
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
Query: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG
Sbjct: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGG 120
Query: 121 HASQCGLASPQSTAPPARRLGTGGLTRR 148
HASQCGLASPQSTAPPARRLGTGGLTRR
Sbjct: 121 HASQCGLASPQSTAPPARRLGTGGLTRR 148
>gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 191 bits (486), Expect = 2e-49
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA
Sbjct: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
Query: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRL 90
AKRMSARGRLRTRGGGERWAAGRGSWLQRL
Sbjct: 61 AKRMSARGRLRTRGGGERWAAGRGSWLQRL 90
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 40.0 bits (92), Expect = 9e-04
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 32/139 (23%)
Query: 15 LLGPCPSGRGILMPSTSSWSRPPPHCLQPS--------SPETAKGAVYASFAAAAKRMSA 66
LL P + R +P+ PP P KGAV + A +
Sbjct: 293 LLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPR 352
Query: 67 RGR-LRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQC 125
GR L G E WA R +HG G P PS RPG A
Sbjct: 353 SGRALEPAQGSELWA--------RAERHGGSSGART--------LPTPSRARPGKPA--- 393
Query: 126 GLASPQSTAPPARRLGTGG 144
P+ +APPAR G GG
Sbjct: 394 ----PRGSAPPARLRGGGG 408
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 40.0 bits (92), Expect = 9e-04
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 32/139 (23%)
Query: 15 LLGPCPSGRGILMPSTSSWSRPPPHCLQPS--------SPETAKGAVYASFAAAAKRMSA 66
LL P + R +P+ PP P KGAV + A +
Sbjct: 293 LLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPR 352
Query: 67 RGR-LRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQC 125
GR L G E WA R +HG G P PS RPG A
Sbjct: 353 SGRALEPAQGSELWA--------RAERHGGSSGART--------LPTPSRARPGKPA--- 393
Query: 126 GLASPQSTAPPARRLGTGG 144
P+ +APPAR G GG
Sbjct: 394 ----PRGSAPPARLRGGGG 408
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 73 RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
R G RGS +RLS GRR G APT PRGP PRP G A A P
Sbjct: 28 RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 83
Query: 132 STAPPAR 138
S A P+R
Sbjct: 84 SRARPSR 90
>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
sapiens]
Length = 159
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 73 RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
R G RGS +RLS GRR G APT PRGP PRP G A A P
Sbjct: 41 RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 96
Query: 132 STAPPAR 138
S A P+R
Sbjct: 97 SRARPSR 103
>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
Length = 159
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 73 RGGGERWAAGRGSWL-QRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQ 131
R G RGS +RLS GRR G APT PRGP PRP G A A P
Sbjct: 41 RASGRHLRRRRGSCSSRRLSGPGRRAG--APT--PRGPPPRPRSFPETGPARLGAAAGPS 96
Query: 132 STAPPAR 138
S A P+R
Sbjct: 97 SRARPSR 103
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 37.7 bits (86), Expect = 0.004
Identities = 38/101 (37%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 58 AAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQH-GRRGGGAAP------TNKPRGPA 110
AAAA R A R RW R LQR ++ GR GGGAAP P GP
Sbjct: 4 AAAAPRSPAVATESRRFAAARWPGWRS--LQRPARRSGRGGGGAAPGPYPSAAPPPPGPG 61
Query: 111 PRPSFHRPGGHASQCGLASPQ---STAPPARR-LGTGGLTR 147
P PS AS C ++ + P +RR LG GG R
Sbjct: 62 PPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPR 102
Score = 35.4 bits (80), Expect = 0.022
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 100 AAPTNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARRLGTGGLTRRGEKSPWGPR 157
A PT P P RPS RP H S G +P ST P +R+ + G R K+ PR
Sbjct: 579 ATPTRPPSRPPSRPS--RPPSHPSAHGSPAPVSTMP--KRMSSEGPPRMSPKAQRHPR 632
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 37.0 bits (84), Expect = 0.007
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 58 AAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPT---NKPRGPAPRPS 114
AAAA +A GG +A + +RL + + G T +P+ PAP
Sbjct: 486 AAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRR 545
Query: 115 FHRPGGHASQCGLASPQSTAP-PARRLGTGGLTRRGEKSPWGPRFPTNS 162
+ G + GLA+ ++ P PA GTG R+ + G R+P S
Sbjct: 546 AMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGS 594
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 37.0 bits (84), Expect = 0.007
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 58 AAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPT---NKPRGPAPRPS 114
AAAA +A GG +A + +RL + + G T +P+ PAP
Sbjct: 486 AAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRR 545
Query: 115 FHRPGGHASQCGLASPQSTAP-PARRLGTGGLTRRGEKSPWGPRFPTNS 162
+ G + GLA+ ++ P PA GTG R+ + G R+P S
Sbjct: 546 AMQGGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGS 594
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 37.0 bits (84), Expect = 0.007
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 6 QRTSFSGMNLLGPCPSG----RGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAA-- 59
QR SF G P+G R + +P S PP L+P++P + + +AS +A
Sbjct: 76 QRGSFEAPRYEGSFPAGPPPTRALPLPQ----SLPPDFRLEPTAPALSPRSSFASSSASD 131
Query: 60 AAKRMSARGRLRTRGGGERWAAGRGSWLQRLS----QHGRRGGGAAPTNKPR-GP--APR 112
A+K S RG L G G A G R S + +R G P GP A
Sbjct: 132 ASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGA 191
Query: 113 PSFHRPGG 120
P+ + PGG
Sbjct: 192 PAGYSPGG 199
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 36.6 bits (83), Expect = 0.010
Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 24 GILMPSTSSWSRPPPHCL------QPSSPETAKGAVYASFAAA-AKRMSARGRLRTRGGG 76
G P+T + S PP C + SP A GAV + AAA R + RG G
Sbjct: 28 GTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPGRR 87
Query: 77 ERWAAGRG----SWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFH----RPGGHASQCGLA 128
R A RG S LS RGGG +GP P PS PGG +
Sbjct: 88 GR-ATTRGEVQPSVRPPLSHRPLRGGGMGRGRPGKGPPPNPSRRLPPAPPGGRRT---WL 143
Query: 129 SPQSTAPPARRLGTGGLTRRGEKSP 153
S +T P A GG RR P
Sbjct: 144 SALATGPAA-----GGAGRRRRSPP 163
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 36.6 bits (83), Expect = 0.010
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 32/106 (30%)
Query: 37 PPHCLQPSSPETA--KGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHG 94
PPH PSS + A + + AA+ + R + GGG AA RGSW
Sbjct: 1258 PPHSPPPSSRQLLGPNAAALSRYLAASYISQSLARRQGPGGGAP-AASRGSW-------- 1308
Query: 95 RRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARRL 140
+APT++ P P+ PQ PPARRL
Sbjct: 1309 ----SSAPTSRASSPPPQ-----------------PQPPPPPARRL 1333
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 35.8 bits (81), Expect = 0.017
Identities = 44/156 (28%), Positives = 58/156 (37%), Gaps = 13/156 (8%)
Query: 8 TSFSGMNLLG-PCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSA 66
+SF L G P+G L+PS+SS S PP C PS+P + G AA ++
Sbjct: 855 SSFHIQQLAGFSAPAGLSPLLPSSSS-SPPPGACGSPSAPTPSAG-------VAATTIAG 906
Query: 67 RGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKP---RGPAPRPSFHRPGGHAS 123
G GG ++ L L R A P+ P RG P P +S
Sbjct: 907 FGHFHKALGGS-LSSSDSPLLTPLQPGARSPQAAQPSPAPPGARGGLGLPEHFLPPPPSS 965
Query: 124 QCGLASPQSTAPPARRLGTGGLTRRGEKSPWGPRFP 159
+ +SP P L G T PR P
Sbjct: 966 RSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQP 1001
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 35.8 bits (81), Expect = 0.017
Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 17 GPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRTRGGG 76
GP P+ G PSTS PP T +G S A KR +G G
Sbjct: 312 GP-PAHPGPGRPSTSPCPLPPSLLCLWVESGTPRGR--QSLAEGVKRDGGQGLPDVEGAP 368
Query: 77 ERWAAGRGSWLQRLSQHGRR------------------GGGAAPTNKPRGPAPRPSFHRP 118
+ ++G G+ L+ S R GG P+ + RGP+P+ P
Sbjct: 369 DMGSSGEGAGLEEGSPLRRERAWPPPSLRTPTPGLTEGGGTGLPSKQRRGPSPKTELGGP 428
Query: 119 GGHASQCGLASPQSTAP 135
G + L+ P P
Sbjct: 429 QGSLGRASLSGPFGPGP 445
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 35.8 bits (81), Expect = 0.017
Identities = 39/160 (24%), Positives = 53/160 (33%), Gaps = 27/160 (16%)
Query: 1 MYFHKQRTSFSGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAA 60
M F T ++ GP G P +W+ PP + + P A V +
Sbjct: 1 MAFDNFGTQIPILSARGPVNHG-----PLLWTWTAPPGAPILAAPPSRAHPRVRIASLHR 55
Query: 61 AKRMSARGRLRTRGGGERWAAGRG-----SWLQRLSQHGRRGGGAAPTNKP--------- 106
+ A G+ RG G WA G+G +W + L GG+ +P
Sbjct: 56 FRIEDAHGQQEVRGEGTYWAVGKGVLSGRTWCEMLV---AGAGGSQKAGRPHFQGRVDVM 112
Query: 107 -RGPAPRPSFHRPGGHASQCGLASPQSTAPPARRLGTGGL 145
R P P PG H G T GTG L
Sbjct: 113 RRDPRVLPGIPAPGKHHRVSGAPRAHGTGAH----GTGAL 148
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 35.4 bits (80), Expect = 0.022
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 60 AAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKP--RGPAPRPS 114
+ R+ RGR R GG GRG +R+ GR G AAP P RG P P+
Sbjct: 75 SGSRLGDRGRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGPA 131
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 35.4 bits (80), Expect = 0.022
Identities = 36/149 (24%), Positives = 50/149 (33%), Gaps = 13/149 (8%)
Query: 11 SGMNLLGPCPSGRGILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRL 70
S + L P P + T S+ P PH P P + + Y +A + G
Sbjct: 531 SDQDTLAPLPGATPWPLLPTFSYQYPAPHPYSPQPPPYHELSSYTYGGGSASSQHSEGSR 590
Query: 71 RTRGGGERWAAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLASP 130
+ AGR + + + G G+ P+ R R GG AS
Sbjct: 591 SSGSTRSDGGAGRTGRPEERAPESKSGSGSESE-----PSSRGGSLRRGGEAS-----GT 640
Query: 131 QSTAPPARRLGTGG---LTRRGEKSPWGP 156
PP R TGG L P+GP
Sbjct: 641 SDGGPPPSRGSTGGAPNLRAHPGLHPYGP 669
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.0 bits (79), Expect = 0.028
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 43 PSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAP 102
P P K + A +A +R R TRGG R RG + G R GA P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPP 204
Query: 103 TNKPRGPAPRPSFHRP--GGHASQCGLASPQSTAPPARR 139
+ + P PR P G + SP + AP A R
Sbjct: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.0 bits (79), Expect = 0.028
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 43 PSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAP 102
P P K + A +A +R R TRGG R RG + G R GA P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPP 204
Query: 103 TNKPRGPAPRPSFHRP--GGHASQCGLASPQSTAPPARR 139
+ + P PR P G + SP + AP A R
Sbjct: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.0 bits (79), Expect = 0.028
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 43 PSSPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGGGAAP 102
P P K + A +A +R R TRGG R RG + G R GA P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPP 204
Query: 103 TNKPRGPAPRPSFHRP--GGHASQCGLASPQSTAPPARR 139
+ + P PR P G + SP + AP A R
Sbjct: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243
>gi|26051231 lactamase, beta isoform a [Homo sapiens]
Length = 547
Score = 34.7 bits (78), Expect = 0.037
Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 45 SPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGG--GAAP 102
S TA+ A A++ R R G W G G L GG GAAP
Sbjct: 6 SAVTARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGAAP 65
Query: 103 TNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARR 139
P P P S SPQ+ APP R
Sbjct: 66 AQSPAAPDPEASPLAEPPQEQSLAPWSPQTPAPPCSR 102
>gi|26051233 lactamase, beta isoform b [Homo sapiens]
Length = 373
Score = 34.7 bits (78), Expect = 0.037
Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 45 SPETAKGAVYASFAAAAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHGRRGG--GAAP 102
S TA+ A A++ R R G W G G L GG GAAP
Sbjct: 6 SAVTARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGAAP 65
Query: 103 TNKPRGPAPRPSFHRPGGHASQCGLASPQSTAPPARR 139
P P P S SPQ+ APP R
Sbjct: 66 AQSPAAPDPEASPLAEPPQEQSLAPWSPQTPAPPCSR 102
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.7 bits (78), Expect = 0.037
Identities = 47/160 (29%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 15 LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
L P P R G P SS S PPP QP S A G AAA + +A G
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418
Query: 73 RGGGERWAAGRGSW--LQRLSQHGRRGGGAAPT-----NKPRGP--APRPSFHRPGGHA- 122
+ G ++AA +W Q+ S G PT P P RP + G +
Sbjct: 419 KDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478
Query: 123 SQCGLASPQ---STAPPARRLGTGGLTRRGEKSPWGPRFP 159
SQ +SP S PP + G+ R + G ++P
Sbjct: 479 SQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYP 518
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.7 bits (78), Expect = 0.037
Identities = 47/160 (29%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 15 LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
L P P R G P SS S PPP QP S A G AAA + +A G
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418
Query: 73 RGGGERWAAGRGSW--LQRLSQHGRRGGGAAPT-----NKPRGP--APRPSFHRPGGHA- 122
+ G ++AA +W Q+ S G PT P P RP + G +
Sbjct: 419 KDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478
Query: 123 SQCGLASPQ---STAPPARRLGTGGLTRRGEKSPWGPRFP 159
SQ +SP S PP + G+ R + G ++P
Sbjct: 479 SQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYP 518
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.7 bits (78), Expect = 0.037
Identities = 47/160 (29%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 15 LLGPCPSGR--GILMPSTSSWSRPPPHCLQPSSPETAKGAVYASFAAAAKRMSARGRLRT 72
L P P R G P SS S PPP QP S A G AAA + +A G
Sbjct: 365 LTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAG------AAAGGQQAAAGMGLG 418
Query: 73 RGGGERWAAGRGSW--LQRLSQHGRRGGGAAPT-----NKPRGP--APRPSFHRPGGHA- 122
+ G ++AA +W Q+ S G PT P P RP + G +
Sbjct: 419 KDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPH 478
Query: 123 SQCGLASPQ---STAPPARRLGTGGLTRRGEKSPWGPRFP 159
SQ +SP S PP + G+ R + G ++P
Sbjct: 479 SQPQQSSPYPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYP 518
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 34.3 bits (77), Expect = 0.048
Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 34/160 (21%)
Query: 12 GMNLLGPCPSGRGILMPS--------TSSWSRP-PPHCLQPSSPETAKGAVYASFAAAAK 62
G + G G G L P +SW P PP + +S + A A A+ AAAA
Sbjct: 175 GCGVAGAGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAAAA 234
Query: 63 RMSARGRLRTRGGGERWAAGRGSWLQRLSQ-------HGRRGGGAAPTNKPRGPAPRPSF 115
+ G G AA G + + S + G G P P P P P
Sbjct: 235 GPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHP 294
Query: 116 HRPGGHAS------------------QCGLASPQSTAPPA 137
H HA+ Q ASP + APPA
Sbjct: 295 HAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPA 334
>gi|239756774 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 34.3 bits (77), Expect = 0.048
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 80 AAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLA---SPQSTAPP 136
A G+ +RLS +R G + P RP ++ GG QC + SP +AP
Sbjct: 12 ALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPR 71
Query: 137 ARRLGTGGLTRRGEK 151
A + +RRGE+
Sbjct: 72 AVHVAEVAASRRGEE 86
>gi|239751265 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 34.3 bits (77), Expect = 0.048
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 80 AAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLA---SPQSTAPP 136
A G+ +RLS +R G + P RP ++ GG QC + SP +AP
Sbjct: 12 ALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPR 71
Query: 137 ARRLGTGGLTRRGEK 151
A + +RRGE+
Sbjct: 72 AVHVAEVAASRRGEE 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,122,800
Number of Sequences: 37866
Number of extensions: 563737
Number of successful extensions: 3881
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 3435
Number of HSP's gapped (non-prelim): 814
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.