Guide to the Human Genome
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Search of human proteins with 239748842

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo
sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754303 PREDICTED: hypothetical protein [Homo sapiens]           390   e-109
gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo ...   390   e-109
gi|239742869 PREDICTED: hypothetical protein XP_002342635 [Homo ...   390   e-109
gi|16933557 dachsous 1 precursor [Homo sapiens]                        39   0.003
gi|46409434 hypothetical protein LOC388759 [Homo sapiens]              36   0.022
gi|50511941 EMI domain containing 1 [Homo sapiens]                     34   0.082
gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens]     31   0.53 
gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]            30   0.91 
gi|239743654 PREDICTED: similar to block of proliferation 1 [Hom...    30   1.5  
gi|21327667 block of proliferation 1 [Homo sapiens]                    30   1.5  
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          30   1.5  
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo...    29   2.0  
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ...    29   2.0  
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]    29   2.0  
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              29   2.0  
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]          29   2.6  
gi|139394604 bromo adjacent homology domain containing 1 [Homo s...    29   2.6  
gi|78499633 phospholipase C, eta 2 [Homo sapiens]                      28   3.4  
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain...    28   3.4  
gi|194018513 patched domain containing 3 [Homo sapiens]                28   3.4  
gi|119120915 rhophilin 1 [Homo sapiens]                                28   3.4  
gi|239757060 PREDICTED: hypothetical protein [Homo sapiens]            28   4.5  
gi|239751570 PREDICTED: hypothetical protein XP_002347902 [Homo ...    28   4.5  
gi|239746082 PREDICTED: hypothetical protein XP_002343651 [Homo ...    28   4.5  
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]    28   4.5  
gi|148806874 hypothetical protein LOC54754 [Homo sapiens]              28   4.5  
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]      28   4.5  
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]    28   5.9  
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]      28   5.9  
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]       28   5.9  

>gi|239754303 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score =  390 bits (1003), Expect = e-109
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
           MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE
Sbjct: 1   MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60

Query: 61  KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
           KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG
Sbjct: 61  KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120

Query: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
           GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR
Sbjct: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180

Query: 181 RKGLV 185
           RKGLV
Sbjct: 181 RKGLV 185


>gi|239748842 PREDICTED: hypothetical protein XP_002346816 [Homo
           sapiens]
          Length = 185

 Score =  390 bits (1003), Expect = e-109
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
           MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE
Sbjct: 1   MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60

Query: 61  KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
           KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG
Sbjct: 61  KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120

Query: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
           GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR
Sbjct: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180

Query: 181 RKGLV 185
           RKGLV
Sbjct: 181 RKGLV 185


>gi|239742869 PREDICTED: hypothetical protein XP_002342635 [Homo
           sapiens]
          Length = 185

 Score =  390 bits (1003), Expect = e-109
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60
           MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE
Sbjct: 1   MIQVTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE 60

Query: 61  KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120
           KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG
Sbjct: 61  KARFCPRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG 120

Query: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
           GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR
Sbjct: 121 GRSRFPMPAALTTQELSSTGYRPRIFSPCYLKEKQFLGFTTCHLGQSSLILILRVFKTQR 180

Query: 181 RKGLV 185
           RKGLV
Sbjct: 181 RKGLV 185


>gi|16933557 dachsous 1 precursor [Homo sapiens]
          Length = 3298

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 17   GKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCE 54
            G+  +SL  AGPGPEG+ +     S+G LRA  PF  E
Sbjct: 2739 GRLRYSLLEAGPGPEGREAFALNSSTGELRARVPFDYE 2776


>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
          Length = 237

 Score = 35.8 bits (81), Expect = 0.022
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 6   PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQS-SGSLRATAPFHCEANQGQEKARF 64
           P  +++L+ P     W+ GR   G    +   A++S S +LR  +       Q Q +A  
Sbjct: 72  PPNAVLLLQPEPSLTWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDRSLREQKQRRAGP 131

Query: 65  CPRPKPGPLTAGPKSS--SYGEVASVQNTRTQGWY 97
            P P P P  AGP+ S  S G  A       +G Y
Sbjct: 132 DPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGAY 166


>gi|50511941 EMI domain containing 1 [Homo sapiens]
          Length = 443

 Score = 33.9 bits (76), Expect = 0.082
 Identities = 37/143 (25%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 12  LMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQG---QEKARFCPRP 68
           L+ PGG A WS+G A             ++  S   T    C    G   Q   + CP P
Sbjct: 14  LLLPGGGAAWSIGAA--------PFSGRRNWCSYVVTRTISCHVQNGTYLQRVLQNCPWP 65

Query: 69  K--PGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFP 126
              PG         +Y  +  +   R   W CC       P H     +E  A   S  P
Sbjct: 66  MSCPGSSYRTVVRPTYKVMYKIVTARE--WRCC-------PGHSGVSCEEVAASSASLEP 116

Query: 127 MPAALTTQELSSTGYRPRIFSPC 149
           M +  T + ++    RP  FS C
Sbjct: 117 MWSGSTMRRMA---LRPTAFSGC 136


>gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens]
          Length = 461

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 32/142 (22%)

Query: 15  PGGKAGWSL-GRAGPGPEGKVSLEATQSSGSLRATAPFHCEA-----NQGQEKARFCPR- 67
           PGG  G +  G A P   G +     +S G LR      C A       G+ +AR   R 
Sbjct: 4   PGGPTGMARPGGARPCSPG-LERAPRRSVGELRLLFEARCAAVAAAAAAGEPRARGAKRR 62

Query: 68  --------PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQEC-P 118
                   P+  P    P+ +   E   V             PT P P  R    ++C P
Sbjct: 63  GGQVPNGLPRAPPAPVIPQLTVTAEEPDVP------------PTSPGPPER---ERDCLP 107

Query: 119 AGGRSRFPMPAALTTQELSSTG 140
           A G S    P  L+T  +SSTG
Sbjct: 108 AAGSSHLQQPRRLSTSSVSSTG 129


>gi|239754648 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 377

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 4  VTPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKAR 63
          V  G+  +    G  A W L   G    G+   EA      L A  P H +  Q Q    
Sbjct: 20 VAVGEEAVFTAAGAAARWPLHTGGAEQFGE---EAVPEGAGLGAQPPPHLQRPQVQTNVL 76

Query: 64 FCPRPKPGPL 73
            PR   GPL
Sbjct: 77 LSPRRVRGPL 86


>gi|239743654 PREDICTED: similar to block of proliferation 1 [Homo
           sapiens]
          Length = 668

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 84  EVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG--GRSRFPMPAALTTQELSSTGY 141
           +V+ + +    GW   + P  P+P+    WAQE P    GR +  +PA        +  Y
Sbjct: 177 KVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESY 236

Query: 142 RPRIFSPCY-LKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
            P    P Y L E++ L +     G+  L  + R F + R
Sbjct: 237 NP---PPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLR 273


>gi|21327667 block of proliferation 1 [Homo sapiens]
          Length = 746

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 84  EVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAG--GRSRFPMPAALTTQELSSTGY 141
           +V+ + +    GW   + P  P+P+    WAQE P    GR +  +PA        +  Y
Sbjct: 255 KVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAESY 314

Query: 142 RPRIFSPCY-LKEKQFLGFTTCHLGQSSLILILRVFKTQR 180
            P    P Y L E++ L +     G+  L  + R F + R
Sbjct: 315 NP---PPEYLLSEEERLAWEQQEPGERKLSFLPRKFPSLR 351


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 24  GRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFCPRPKPGPLTAGPKSSSYG 83
           G  G      +SL   Q  GS R+               R  PRP PGP + G   SS  
Sbjct: 100 GGGGSARSSGISLGYDQRHGSPRS--------------GRSDPRPGPGPPSVGSARSS-- 143

Query: 84  EVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPMPA 129
            V+S+ +  + G Y    P    P      A+     G + FP+PA
Sbjct: 144 -VSSLGSRGSAGAYADFLPPGACPAP----ARSPEPAGPAPFPLPA 184


>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
           sapiens]
          Length = 1242

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 27  GPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEK--------ARFCPRPKPGP 72
           GPG  G      +Q  GS   +AP    + QG           +R CP P P P
Sbjct: 677 GPGSTGSSESPGSQGPGSPEGSAPLEPPSQQGCRSLAWGEPAGSRSCPLPAPTP 730


>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
           sapiens]
          Length = 80

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 68  PKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPM 127
           P PGP++ GP+++  G           G   C  P    P  +L WA E     RS FP 
Sbjct: 19  PVPGPISVGPQAAPPGATGHADGNIPAGPGLCS-PQLLLPGGQLFWAPEVL---RSPFPG 74

Query: 128 P 128
           P
Sbjct: 75  P 75


>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
          Length = 663

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 24/80 (30%), Positives = 27/80 (33%), Gaps = 24/80 (30%)

Query: 44  SLRATAPFHCEANQGQEKARFCPRPKPGPL--------TAGPKSS------SYGEVASVQ 89
           SLR     HC++          P P PGPL           P S       S+    S Q
Sbjct: 567 SLRKHMKIHCKS----------PPPSPGPLGYSSVGTPVGAPLSPVLDPARSHSSTLSPQ 616

Query: 90  NTRTQGWYCCQFPTWPSPTH 109
            T    WY CQ    PS  H
Sbjct: 617 VTNLNEWYVCQASGAPSHLH 636


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 9   SMILMTPGGKAGWSLGRAGP-GPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFCPR 67
           SM    P  +A +S+    P GP G   L ++ ++ S  ATA         Q +    P 
Sbjct: 783 SMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATAL--------QIQPPGSPD 834

Query: 68  PKPGPLTAGPKSSSYGEVASVQNTRTQG 95
           P P P    P SS+ G VA +      G
Sbjct: 835 PPPAPPAPAPASSAPGHVAKLPQKEPVG 862


>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
          Length = 239

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 26/105 (24%)

Query: 15  PGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARF---------- 64
           PG  +     R GP PE   SL A   S SLRA   F  E  +   + +F          
Sbjct: 33  PGSGSRHGSARPGPTPEPSGSLGAALDS-SLRAAVAFKAEGQRCYREKKFREAIGKYHRA 91

Query: 65  --------------CPRPKPGPLTA-GPKSSSYGEVASVQNTRTQ 94
                          P P PGP ++ GP   S  +   V++T  +
Sbjct: 92  LLQLKAAQGARPSGLPAPAPGPTSSPGPARLSEEQRRLVESTEVE 136


>gi|139394604 bromo adjacent homology domain containing 1 [Homo
           sapiens]
          Length = 780

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 66  PRPKPGPLTAGPKSSSYGEVASVQNTRTQGWYCCQFPTWPS---------PTHR-LSWAQ 115
           PRPK   +       ++   +S +     GW  C    WPS         P+H+ LS A 
Sbjct: 245 PRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHQPLSKAL 304

Query: 116 ECPAGGRSRFPM 127
           E P G R   P+
Sbjct: 305 ESPLGLRPHLPL 316


>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
          Length = 1416

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 27   GPGPEGKVSLEATQSSGSLRATAPFH--------CEANQGQEKARFCPRPKPGPLTAGPK 78
            GPGP  +   +    SGS R T P          C      E+    P P P P  A P 
Sbjct: 967  GPGPAPEAPAQEGPGSGSPRDTRPLSTQRPLPPLCSLETIAEEP--APGPGPPPPAAVPT 1024

Query: 79   SSSYG 83
            SSS G
Sbjct: 1025 SSSQG 1029


>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
            proline-rich containing [Homo sapiens]
          Length = 1435

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 66   PRPKPGPLTAGPKSSSYGEVASVQNT--RTQGWYCCQFPTWPSPTHRLSWAQECPA 119
            P  +PGP + GP+S+++  +    N   R++GW     P  PSP    S  +  P+
Sbjct: 1273 PSCRPGPGSQGPESATWKTLGQQLNAELRSRGWGQQDGPGPPSPGQSPSPCRTSPS 1328


>gi|194018513 patched domain containing 3 [Homo sapiens]
          Length = 767

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 21 WSLGRAGPGPEGKVSLEATQSSGSLRATAP-FHCEANQGQEKARFCPRPKPGPLTAGPKS 79
          W   +  PGPE K  L    S     AT P ++ E+ + + + +   +P PGPL      
Sbjct: 3  WVEPKPRPGPEQKPKLTKPDS-----ATGPQWYQESQESESEGK---QPPPGPLAPPKSP 54

Query: 80 SSYGEVASVQN 90
             G +AS Q+
Sbjct: 55 EPSGPLASEQD 65


>gi|119120915 rhophilin 1 [Homo sapiens]
          Length = 670

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 92  RTQGWYCCQFP--TWPSPTHRLSWAQECPAGGRSRFPMPAA 130
           R+Q  + C+ P  TW SP   L+W+++   G     P P A
Sbjct: 614 RSQREHGCKTPASTWASPRPLLNWSRKAQQGKTGGCPQPCA 654


>gi|239757060 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 168

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 24/80 (30%)

Query: 6   PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE----- 60
           P  ++ L+T GG       RA PGP   V  EAT  S      AP H     G+      
Sbjct: 64  PSAAVPLVTRGG-------RAAPGPPSLVRAEATSGS----RDAPPHAFVQLGRRCLSRS 112

Query: 61  --------KARFCPRPKPGP 72
                   +  FC  P P P
Sbjct: 113 SAALETLAQCHFCTLPSPPP 132


>gi|239751570 PREDICTED: hypothetical protein XP_002347902 [Homo
           sapiens]
          Length = 168

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 24/80 (30%)

Query: 6   PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE----- 60
           P  ++ L+T GG       RA PGP   V  EAT  S      AP H     G+      
Sbjct: 64  PSAAVPLVTRGG-------RAAPGPPSLVRAEATSGS----RDAPPHAFVQLGRRCLSRS 112

Query: 61  --------KARFCPRPKPGP 72
                   +  FC  P P P
Sbjct: 113 SAALETLAQCHFCTLPSPPP 132


>gi|239746082 PREDICTED: hypothetical protein XP_002343651 [Homo
           sapiens]
          Length = 168

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 24/80 (30%)

Query: 6   PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQE----- 60
           P  ++ L+T GG       RA PGP   V  EAT  S      AP H     G+      
Sbjct: 64  PSAAVPLVTRGG-------RAAPGPPSLVRAEATSGS----RDAPPHAFVQLGRRCLSRS 112

Query: 61  --------KARFCPRPKPGP 72
                   +  FC  P P P
Sbjct: 113 SAALETLAQCHFCTLPSPPP 132


>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
          Length = 6306

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 6    PGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFC 65
            PG S    TPG         +G  P G    ++TQ+        P   E    Q+ ++  
Sbjct: 6175 PGPSTAFFTPG---------SGMPPAGGEISKSTQNLIGAMEEVPPDWERASFQQGSQAS 6225

Query: 66   PRPKPGPLTAG--PKSSSYGEVASVQNTRTQ 94
            P  KP P      P S  YG+ + + +  +Q
Sbjct: 6226 PDLKPSPQNGATFPSSGGYGQGSLIADEESQ 6256


>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
          Length = 756

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 22/99 (22%)

Query: 5   TPGQSMILMTPGGKAGWSLGRAGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARF 64
           +P  S  L++PGG+          GP+G +   + Q  G   + +P    A++ +++  F
Sbjct: 657 SPVPSSGLLSPGGR----------GPQGALQSPSAQKRGLSPSPSP----ASKSKKRPLF 702

Query: 65  --------CPRPKPGPLTAGPKSSSYGEVASVQNTRTQG 95
                    P P PG   +G +S ++G     Q+ + +G
Sbjct: 703 GSPSPAEKTPHPGPGLRVSGEQSLAWGLGGPSQSQKRKG 741


>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
          Length = 1349

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 35   SLEATQSSGS----LRATAPFHCEANQGQEKARFCPRPKPGPLTAGPKSS--SYGEVASV 88
            S ++T S+GS     R+ +P +  A      A   P P PGP  AGP  S   +G+  S 
Sbjct: 1248 SRKSTPSTGSPSQSSRSGSPSYRPAMGFTTLATGYPSPPPGPAPAGPGDSLDVFGQTPSP 1307

Query: 89   QNTRTQGWYCCQFPTWPSPTHRLSWAQECPAGGRSRFPMPAALTT 133
            + T  +       P  P PT         P  G+ +   PA  T+
Sbjct: 1308 RRTGEE----LLRPETPPPT--------LPTSGKLQRDRPAPATS 1340


>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
          Length = 462

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 106 SPTHRLSWAQ-ECPAGGRSRFPMPAALTTQELSSTGY---------RPRIFSPCYLKEKQ 155
           SP   L+  Q + P  G S  P PA + TQ  SS             PRI+ PC++ + +
Sbjct: 36  SPPGALTTLQHQLPVSGYST-PSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDK 94

Query: 156 FLGFTTCHLGQSSLILILRVFKTQRRKGLV 185
             G+   H G S+       F+   +K +V
Sbjct: 95  SSGY---HYGVSACEGCKGFFRRSIQKNMV 121


>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
          Length = 462

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 106 SPTHRLSWAQ-ECPAGGRSRFPMPAALTTQELSSTGY---------RPRIFSPCYLKEKQ 155
           SP   L+  Q + P  G S  P PA + TQ  SS             PRI+ PC++ + +
Sbjct: 36  SPPGALTTLQHQLPVSGYST-PSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDK 94

Query: 156 FLGFTTCHLGQSSLILILRVFKTQRRKGLV 185
             G+   H G S+       F+   +K +V
Sbjct: 95  SSGY---HYGVSACEGCKGFFRRSIQKNMV 121


>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
          Length = 1083

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 14  TPGGKAGWSLGR----AGPGPEGKVSLEATQSSGSLRATAPFHCEANQGQEKARFCPRPK 69
           TPG  A ++  +    A P P+G  S + + S  S    AP           A + P P 
Sbjct: 874 TPGTPAMYNTDQFSPYAAPSPQG--SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPS 931

Query: 70  PGPLTAGPKSSSYGEVASVQNTRTQGWY 97
           P    A P  S  G         + G Y
Sbjct: 932 PMAYQASPSPSPVGYSPMTPGAPSPGGY 959


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,808,815
Number of Sequences: 37866
Number of extensions: 461907
Number of successful extensions: 1756
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 49
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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