Guide to the Human Genome
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Search of human proteins with 239748732

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo
sapiens]
         (85 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo ...   180   2e-46
gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo ...   180   2e-46
gi|169161340 PREDICTED: hypothetical protein [Homo sapiens]            33   0.063
gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]                32   0.11 
gi|169161633 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]            31   0.18 
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]            30   0.41 
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ...    30   0.41 
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ...    30   0.41 
gi|120952764 mastermind-like domain containing 1 [Homo sapiens]        30   0.41 
gi|195947401 doublesex and mab-3 related transcription factor 2 ...    30   0.54 
gi|5729806 doublesex and mab-3 related transcription factor 2 is...    30   0.54 
gi|153945850 doublesex and mab-3 related transcription factor 2 ...    30   0.54 
gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens]    29   0.70 
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]    29   0.70 
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]     29   0.91 
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]       29   0.91 
gi|110227596 calmodulin-like 4 isoform 2 [Homo sapiens]                29   0.91 
gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens]                29   0.91 
gi|223941923 OTU domain containing 1 [Homo sapiens]                    28   1.2  
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]           28   1.2  
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ...    28   1.2  
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]           28   1.2  
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]           28   1.2  
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c...    28   1.6  
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]    28   1.6  
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca...    28   1.6  
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap...    28   2.0  
gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens]      28   2.0  
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ...    28   2.0  

>gi|239748732 PREDICTED: hypothetical protein XP_002346784 [Homo
          sapiens]
          Length = 85

 Score =  180 bits (456), Expect = 2e-46
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60
          MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC
Sbjct: 1  MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60

Query: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85
          RPRSQCAGRGTRRSTSSTSPTARCV
Sbjct: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85


>gi|239742778 PREDICTED: hypothetical protein XP_002342649 [Homo
          sapiens]
          Length = 85

 Score =  180 bits (456), Expect = 2e-46
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60
          MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC
Sbjct: 1  MTHWPGLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAAC 60

Query: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85
          RPRSQCAGRGTRRSTSSTSPTARCV
Sbjct: 61 RPRSQCAGRGTRRSTSSTSPTARCV 85


>gi|169161340 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 6   GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQ 65
           G+R   GG RGP  E L+RR      R +++             G++PG    +C+P   
Sbjct: 102 GVRRDVGGHRGPTVEGLERRAQERVPRGTRVG------------GVLPGPRRGSCKPSQT 149

Query: 66  CAG 68
           C+G
Sbjct: 150 CSG 152


>gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]
          Length = 638

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 14 KRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQCAGRGTRR 73
          + GP    L+ +PA    R + ++GRG+   RD   G  PG +     P +   GRG RR
Sbjct: 28 RSGPHLSALRAQPA----RAAHLSGRGTYVRRD-TAGGGPGQARPLGPPGTSLLGRGARR 82

Query: 74 STSSTSPTA 82
          S     P A
Sbjct: 83 SGEGWCPGA 91


>gi|169161633 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 172

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 12  GGKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQCAG 68
           GG RGP  E L+RR      R +++ G            ++PG    +C+P   C+G
Sbjct: 107 GGHRGPTVEGLERRAQERVPRGTRVGG------------VLPGPRRGSCKPSQTCSG 151


>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 5   PGLRVLEGGKRGPIYETLK---RRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASPAACR 61
           P LR  E G+RG     +     R  +P  R SQ      PR      G +PG +    R
Sbjct: 164 PSLRAQEAGRRGNAVGGVTGTGSRLHAPGARGSQRPSARGPR------GPLPGLAAWCYR 217

Query: 62  PRSQCAGRGTRRSTSSTSPTAR 83
           PR++CA    +++      +AR
Sbjct: 218 PRARCAASEPQQTLRGVCDSAR 239


>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 36 IAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
          +AGR  PR R       PGA P AACRPR+  AG  T
Sbjct: 59 LAGRLRPRRR-----WAPGAGPVAACRPRAAAAGGPT 90


>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
          sapiens]
          Length = 215

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 36 IAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
          +AGR  PR R       PGA P AACRPR+  AG  T
Sbjct: 59 LAGRLRPRRR-----WAPGAGPVAACRPRAAAAGGPT 90


>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
          sapiens]
          Length = 215

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 36 IAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
          +AGR  PR R       PGA P AACRPR+  AG  T
Sbjct: 59 LAGRLRPRRR-----WAPGAGPVAACRPRAAAAGGPT 90


>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
          Length = 774

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 21  TLKRRPASPHFRTSQIAGRGSPR------LRDQNLGMIPGASPAACRPRSQCAGRGTRRS 74
           T+KRR    HF+   +A  G P       L D  L M PGA P+     + CA       
Sbjct: 59  TVKRRQEEDHFQFPDMADGGYPNKIKRPCLEDVTLAMGPGAHPS-----TACAELQVPPL 113

Query: 75  TSSTSPTA 82
           T + SP A
Sbjct: 114 TINPSPAA 121


>gi|195947401 doublesex and mab-3 related transcription factor 2
           isoform 1 [Homo sapiens]
          Length = 226

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 39  RGSPRLRDQNLGMIPGASPAACRPRSQC--AGRGTR-RSTSSTSPTARC 84
           RG P+ R     + P ASPA   PR +C  AG G   R  S T   ARC
Sbjct: 81  RGGPQPRPP---LAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARC 126


>gi|5729806 doublesex and mab-3 related transcription factor 2
           isoform 1 [Homo sapiens]
          Length = 226

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 39  RGSPRLRDQNLGMIPGASPAACRPRSQC--AGRGTR-RSTSSTSPTARC 84
           RG P+ R     + P ASPA   PR +C  AG G   R  S T   ARC
Sbjct: 81  RGGPQPRPP---LAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARC 126


>gi|153945850 doublesex and mab-3 related transcription factor 2
           isoform 2 [Homo sapiens]
          Length = 561

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 39  RGSPRLRDQNLGMIPGASPAACRPRSQC--AGRGTR-RSTSSTSPTARC 84
           RG P+ R     + P ASPA   PR +C  AG G   R  S T   ARC
Sbjct: 81  RGGPQPRPP---LAPQASPAGTGPRERCTPAGGGAEPRKLSRTPKCARC 126


>gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo
          sapiens]
          Length = 207

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 36 IAGRGSPRLRDQNLGMIPGASP------AACRPRSQCAGRGTRRSTSSTSPTAR 83
          + GRG+        G   G SP      AA R +++  GRG RR+T+ + P+ R
Sbjct: 1  MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLR 54


>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo
          sapiens]
          Length = 186

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 36 IAGRGSPRLRDQNLGMIPGASP------AACRPRSQCAGRGTRRSTSSTSPTAR 83
          + GRG+        G   G SP      AA R +++  GRG RR+T+ + P+ R
Sbjct: 1  MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLR 54


>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
          Length = 498

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 36  IAGRGSPRLRDQNLGMIPGA--SPAACRPRSQCAGRGTRRSTSSTS 79
           + GRGSP  R+Q     P +  +P   R R +  G GT R  ++TS
Sbjct: 171 VTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATS 216


>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
          Length = 486

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 36  IAGRGSPRLRDQNLGMIPGA--SPAACRPRSQCAGRGTRRSTSSTS 79
           + GRGSP  R+Q     P +  +P   R R +  G GT R  ++TS
Sbjct: 159 VTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATS 204


>gi|110227596 calmodulin-like 4 isoform 2 [Homo sapiens]
          Length = 149

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 51 MIPGASPAACRPRSQCAGRGTRRSTSSTSPT 81
          ++PG  P+    R +  G+GT R + S+ PT
Sbjct: 6  LLPGPPPSLADFRLEAGGKGTERGSGSSKPT 36


>gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens]
          Length = 196

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 51 MIPGASPAACRPRSQCAGRGTRRSTSSTSPT 81
          ++PG  P+    R +  G+GT R + S+ PT
Sbjct: 6  LLPGPPPSLADFRLEAGGKGTERGSGSSKPT 36


>gi|223941923 OTU domain containing 1 [Homo sapiens]
          Length = 481

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 26  PASPHFR-TSQIAGR--GSPRLRDQNLGMIPGASPAACRPRSQC 66
           P  PH+  T+QI  R  G+ RL       +PGA+ +A  PR +C
Sbjct: 103 PLPPHYTSTAQITVRALGADRLLLHGPDPVPGAAGSAAAPRGRC 146


>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 6   GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGS--PRLRDQNLGMIPGASPAACRPR 63
           G RV E G R       + RP +PH   S  A R S  PR R   L   P       RP 
Sbjct: 74  GQRVKEAGSR-------RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126

Query: 64  SQCAGRG 70
               GRG
Sbjct: 127 GSGPGRG 133


>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
           sapiens]
          Length = 305

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 30  HFRTSQIAGRGSPRLRDQNLGMIPGASPAACRPRSQCAGRGTRRSTSSTS 79
           H  +S + G+  P++   N+  +P   P+A  P +  A    R++ SS +
Sbjct: 228 HSPSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASSVT 277


>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 6   GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGS--PRLRDQNLGMIPGASPAACRPR 63
           G RV E G R       + RP +PH   S  A R S  PR R   L   P       RP 
Sbjct: 74  GQRVKEAGSR-------RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126

Query: 64  SQCAGRG 70
               GRG
Sbjct: 127 GSGPGRG 133


>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 6   GLRVLEGGKRGPIYETLKRRPASPHFRTSQIAGRGS--PRLRDQNLGMIPGASPAACRPR 63
           G RV E G R       + RP +PH   S  A R S  PR R   L   P       RP 
Sbjct: 74  GQRVKEAGSR-------RARPCTPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPP 126

Query: 64  SQCAGRG 70
               GRG
Sbjct: 127 GSGPGRG 133


>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 4 isoform 1 [Homo sapiens]
          Length = 964

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 53  PGASPAACRPRSQCAGRGTRRSTSSTSPTA 82
           PG +PA+ RP S C   G RR +SS +P++
Sbjct: 316 PGPTPASPRPASPC---GKRRYSSSGTPSS 342


>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo
          sapiens]
          Length = 326

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)

Query: 13 GKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMI---PGASPAACRPRSQCAGR 69
          G  GP   +L    +SP   TS++ GR +  +  ++ G +   PG +P A R        
Sbjct: 33 GSSGPW--SLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPR-------L 83

Query: 70 GTRRSTSSTSPTA 82
          G   S S TSPTA
Sbjct: 84 GPELSPSPTSPTA 96


>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 4 isoform 2 [Homo sapiens]
          Length = 902

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 53  PGASPAACRPRSQCAGRGTRRSTSSTSPTA 82
           PG +PA+ RP S C   G RR +SS +P++
Sbjct: 253 PGPTPASPRPASPC---GKRRYSSSGTPSS 279


>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
           sapiens]
          Length = 262

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 13  GKRGPIYETLKRRPASPHFRTSQIAGRGSPRLRDQNLGMIPGASP-AACRPRSQCAGRGT 71
           G RGP++  L    A PH   +++ GR +           PG  P    RP +   G   
Sbjct: 126 GPRGPLFPALLAALARPH--GAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHA 183

Query: 72  RRSTSS--TSPTA 82
            R  S+   SPT+
Sbjct: 184 HRGGSAWKRSPTS 196


>gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens]
          Length = 562

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 37  AGRGSPRLRDQNLGMIPGASPAACRP 62
           +  G+PRLR +  G +P ASP    P
Sbjct: 131 SAHGAPRLRQRRQGPLPRASPGRANP 156


>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
           sapiens]
          Length = 262

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 16/70 (22%)

Query: 8   RVLEGG-----KRGPIYETLKRRPAS-----------PHFRTSQIAGRGSPRLRDQNLGM 51
           R+L GG      R P +E+ +RRPAS           P  R S+++  G P  R  +   
Sbjct: 129 RLLPGGGRLRSPRDPAWESGRRRPASGVRVESGVLPVPGPRGSRLSKLGGPHARSPHGNR 188

Query: 52  IPGASPAACR 61
           +P A   A R
Sbjct: 189 VPQARSPALR 198


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,986,419
Number of Sequences: 37866
Number of extensions: 194462
Number of successful extensions: 738
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 61
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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