Guide to the Human Genome
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Name: LOC100288267 Sequence: fasta or formatted (85aa) NCBI GI: 239742778
Description:

PREDICTED: hypothetical protein XP_002342649

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2          7           2
 C cysteine            3.5          3           1
 D aspartate           1.2          1           1
 E glutamate           2.4          2           1
 F phenylalanine       1.2          1           1
 G glycine            11.8         10           2
 H histidine           2.4          2           1
 I isoleucine          3.5          3           1
 K lysine              2.4          2           1
 L leucine             5.9          5           1
 M methionine          2.4          2           1
 N asparagine          1.2          1           1
 P proline            10.6          9           1
 Q glutamine           3.5          3           1
 R arginine           16.5         14           2
 S serine             10.6          9           2
 T threonine           8.2          7           1
 V valine              2.4          2           1
 W tryptophan          1.2          1           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342649 
LOC100290055          1.000   PREDICTED: hypothetical protein XP_002346784 
LOC100129200          0.052   PREDICTED: hypothetical protein 
CLK3                  0.045   CDC-like kinase 3 isoform a 
LOC100129200          0.045   PREDICTED: hypothetical protein 
LOC100131354          0.039   PREDICTED: hypothetical protein 
LOC100293985          0.032   PREDICTED: hypothetical protein 
LOC100289986          0.032   PREDICTED: hypothetical protein XP_002346657 
LOC100288009          0.032   PREDICTED: hypothetical protein XP_002342502 
MAMLD1                0.032   mastermind-like domain containing 1 
DMRT2                 0.032   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.032   doublesex and mab-3 related transcription factor 2 is...
DMRT2                 0.032   doublesex and mab-3 related transcription factor 2 ...
FAM104A               0.026   hypothetical protein LOC84923 isoform 1 
FAM104A               0.026   hypothetical protein LOC84923 isoform 2 
MECP2                 0.026   methyl CpG binding protein 2 isoform 2 
MECP2                 0.026   methyl CpG binding protein 2 isoform 1 
CALML4                0.026   calmodulin-like 4 isoform 2 
CALML4                0.026   calmodulin-like 4 isoform 1 
OTUD1                 0.019   OTU domain containing 1 
LOC100132515          0.019   PREDICTED: similar to hCG2045429 
LOC100290286          0.019   PREDICTED: hypothetical protein XP_002348149 
LOC100132515          0.019   PREDICTED: similar to hCG2045429 
LOC100132515          0.019   PREDICTED: similar to hCG2045429 
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, c...
ZFP36                 0.019   zinc finger protein 36, C3H type, homolog 
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC375295             0.019   PREDICTED: hypothetical protein LOC375295 
LOC100131908          0.019   PREDICTED: similar to forkhead box O6 
LOC100291176          0.019   PREDICTED: hypothetical protein XP_002346954 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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