Guide to the Human Genome
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Name: LOC100290286 Sequence: fasta or formatted (305aa) NCBI GI: 239752220
Description:

PREDICTED: hypothetical protein XP_002348149

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         28           2
 C cysteine            2.6          8           1
 D aspartate           5.6         17           2
 E glutamate           5.6         17           5
 F phenylalanine       1.6          5           1
 G glycine            11.8         36           2
 H histidine           5.9         18           2
 I isoleucine          1.0          3           1
 K lysine              5.2         16           1
 L leucine             8.2         25           3
 M methionine          1.6          5           1
 N asparagine          1.0          3           1
 P proline             7.2         22           2
 Q glutamine           3.3         10           2
 R arginine            4.9         15           1
 S serine              9.8         30           2
 T threonine           4.6         14           1
 V valine              6.9         21           2
 W tryptophan          3.0          9           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348149 
LOC100289204          0.937   PREDICTED: hypothetical protein XP_002343822 
HRNR                  0.018   hornerin 
DDX51                 0.016   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
QSK                   0.016   serine/threonine-protein kinase QSK 
RPGR                  0.016   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC100291076          0.016   PREDICTED: hypothetical protein XP_002347846 
LOC100287390          0.013   PREDICTED: hypothetical protein XP_002342820 
LOC100287390          0.013   PREDICTED: hypothetical protein 
MARCKS                0.013   myristoylated alanine-rich protein kinase C substra...
C9orf75               0.013   hypothetical protein LOC286262 isoform 2 
C9orf75               0.013   hypothetical protein LOC286262 isoform 1 
DNMT3B                0.011   DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...
DNMT3B                0.011   DNA cytosine-5 methyltransferase 3 beta isoform 3 [H...
DNMT3B                0.011   DNA cytosine-5 methyltransferase 3 beta isoform 2 [H...
DNMT3B                0.011   DNA cytosine-5 methyltransferase 3 beta isoform 1 [Ho...
MAST4                 0.011   microtubule associated serine/threonine kinase fami...
LOC100291061          0.011   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.011   PREDICTED: hypothetical protein XP_002343855 
LOC100290261          0.010   PREDICTED: hypothetical protein XP_002347648 
TRIO                  0.010   triple functional domain (PTPRF interacting) 
LOC100291781          0.010   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          0.010   PREDICTED: hypothetical protein XP_002347567 
LOC100286890          0.010   PREDICTED: hypothetical protein XP_002343388 
RUSC2                 0.010   RUN and SH3 domain containing 2 
RUSC2                 0.010   RUN and SH3 domain containing 2 
GOLGA8B               0.008   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.008   golgi autoantigen, golgin subfamily a, 8A 
LOC100293827          0.008   PREDICTED: hypothetical protein 
LOC100290416          0.008   PREDICTED: hypothetical protein XP_002346415 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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