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Search of human proteins with 239748704
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748704 PREDICTED: hypothetical protein XP_002346777 [Homo
sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754182 PREDICTED: hypothetical protein [Homo sapiens] 287 2e-78
gi|239748704 PREDICTED: hypothetical protein XP_002346777 [Homo ... 287 2e-78
gi|239742735 PREDICTED: hypothetical protein XP_002342625 [Homo ... 287 2e-78
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 30 0.79
gi|148276998 zinc finger protein 628 [Homo sapiens] 30 0.79
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 29 1.4
gi|32261309 G protein-coupled receptor 135 [Homo sapiens] 29 1.4
gi|40018612 MyoD family inhibitor domain containing protein isof... 29 1.4
gi|169162518 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|169162027 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|169161198 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 28 1.8
gi|22748979 transmembrane protein 199 [Homo sapiens] 28 1.8
gi|239752966 PREDICTED: hypothetical protein [Homo sapiens] 28 2.3
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 28 2.3
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 28 2.3
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 28 2.3
gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo sap... 28 3.0
gi|42518080 transcription factor 7 (T-cell specific, HMG-box) is... 28 3.0
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 28 3.0
gi|50511941 EMI domain containing 1 [Homo sapiens] 28 3.0
gi|17158044 ribosomal protein S6 [Homo sapiens] 27 3.9
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 27 3.9
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 27 3.9
gi|62422577 neurobeachin [Homo sapiens] 27 3.9
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 27 3.9
gi|49355781 abhydrolase domain containing 13 [Homo sapiens] 27 3.9
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 27 3.9
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 27 3.9
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 27 3.9
>gi|239754182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 287 bits (735), Expect = 2e-78
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL
Sbjct: 1 MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
Query: 61 YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL
Sbjct: 61 YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
Query: 121 HRDARIRGAPEGEDLP 136
HRDARIRGAPEGEDLP
Sbjct: 121 HRDARIRGAPEGEDLP 136
>gi|239748704 PREDICTED: hypothetical protein XP_002346777 [Homo
sapiens]
Length = 136
Score = 287 bits (735), Expect = 2e-78
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL
Sbjct: 1 MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
Query: 61 YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL
Sbjct: 61 YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
Query: 121 HRDARIRGAPEGEDLP 136
HRDARIRGAPEGEDLP
Sbjct: 121 HRDARIRGAPEGEDLP 136
>gi|239742735 PREDICTED: hypothetical protein XP_002342625 [Homo
sapiens]
Length = 136
Score = 287 bits (735), Expect = 2e-78
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL
Sbjct: 1 MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
Query: 61 YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL
Sbjct: 61 YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
Query: 121 HRDARIRGAPEGEDLP 136
HRDARIRGAPEGEDLP
Sbjct: 121 HRDARIRGAPEGEDLP 136
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 29.6 bits (65), Expect = 0.79
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 15 RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQ 67
R G G GS QG + G +RGG GS GQ G RDGQ
Sbjct: 499 RGSGGGQGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSNGQGS-GGNQCSRDGQ 550
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 29.6 bits (65), Expect = 0.79
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 18 GEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQA 55
G G G QG A + GAG +P GG+G +G A
Sbjct: 747 GAGGGRARQGPRAVGKAGQGAGVVWLPGPGGLGVQGAA 784
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 16 PEGEGAGSQWQGVV---AEDRIAGGAGAAGVPTRGGIGSEG 53
P G S W V A DR AG AGA T G +GS G
Sbjct: 777 PLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
>gi|32261309 G protein-coupled receptor 135 [Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 17/62 (27%)
Query: 35 AGGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQ 94
A G G A P GG+G G A G + RPLG P L+H
Sbjct: 58 ASGGGTAAAPGGGGLGGSGAAREAGAAV-----------------RRPLGPEAAPLLSHG 100
Query: 95 PA 96
A
Sbjct: 101 AA 102
>gi|40018612 MyoD family inhibitor domain containing protein isoform
p40 [Homo sapiens]
Length = 355
Score = 28.9 bits (63), Expect = 1.4
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 7 EPCSCLHP--------RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVE 58
E S LHP RP G A Q +G + +R GAG A P G +G + AE
Sbjct: 74 EAVSSLHPAPHSPSSVRPAGRRARRQRRGAGSAERPMSGAGEALAP--GPVGPQRVAEAG 131
Query: 59 G 59
G
Sbjct: 132 G 132
>gi|169162518 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 28.5 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 8 PCSCLHPRPEGEGAGSQ----WQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
PC L RP+ AG Q +G + + G GAA RG + +AEV G+
Sbjct: 132 PCQALRGRPQIPHAGVQNVCDAEGGLFDGGGVQGEGAAAWAGRGAVSGRPEAEVGGV 188
>gi|169162027 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 28.5 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 8 PCSCLHPRPEGEGAGSQ----WQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
PC L RP+ AG Q +G + + G GAA RG + +AEV G+
Sbjct: 132 PCQALRGRPQIPHAGVQNVCDAEGGLFDGGGVQGEGAAAWAGRGAVSGRPEAEVGGV 188
>gi|169161198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 28.5 bits (62), Expect = 1.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 8 PCSCLHPRPEGEGAGSQ----WQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
PC L RP+ AG Q +G + + G GAA RG + +AEV G+
Sbjct: 132 PCQALRGRPQIPHAGVQNVCDAEGGLFDGGGVQGEGAAAWAGRGAVSGRPEAEVGGV 188
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 28.5 bits (62), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 26 QGVVAEDRIAGGAGAAGVP-TRGGIGSEGQAEVEGL 60
QG+ G G G P RG IGS+G++ V+GL
Sbjct: 724 QGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGL 759
>gi|22748979 transmembrane protein 199 [Homo sapiens]
Length = 208
Score = 28.5 bits (62), Expect = 1.8
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 AAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQR-----LHQLLEG 80
A G +GG S G + L+RD Q L +R LH+LLEG
Sbjct: 37 ALGKKHKGGDSSSGPQRLVSFRLIRDLHQHLRERDSKLYLHELLEG 82
>gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 8 PCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPT 45
P C P+ GEG G + G V + + GG GA T
Sbjct: 71 PALCSSPKASGEGVGGE--GKVTGECLVGGRGAGWAQT 106
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 14 PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
P P GE +G +D I G AG G P + G G+ G + GL
Sbjct: 1160 PGPPGE------KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 14 PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
P P GE +G +D I G AG G P + G G+ G + GL
Sbjct: 1160 PGPPGE------KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 28.1 bits (61), Expect = 2.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 14 PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
P P GE +G +D I G AG G P + G G+ G + GL
Sbjct: 1160 PGPPGE------KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200
>gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo
sapiens]
Length = 796
Score = 27.7 bits (60), Expect = 3.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 19 EGAGSQWQGVVAEDRIAGGAGAAGVP-TRGGIGSEGQAEVEG 59
E AGS W+ + R+ G G P +R G G A EG
Sbjct: 618 EDAGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEG 659
>gi|42518080 transcription factor 7 (T-cell specific, HMG-box)
isoform 1 [Homo sapiens]
Length = 384
Score = 27.7 bits (60), Expect = 3.0
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 16 PEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEG 59
PE + A + V + AGGAG GVP G G+ G+AE G
Sbjct: 44 PERDLAELKSSLVNESEGAAGGAGIPGVP-GAGAGARGEAEALG 86
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 36 GGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQRL 74
G AG AG+P G G+ + E E L G++ QRL
Sbjct: 61 GAAGGAGIPGVPGAGAGARGEAEAL-----GREHAAQRL 94
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 27.7 bits (60), Expect = 3.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 14 PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
P P GEG QGV + G G G RG G G+ + GL
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGPLGPRG--ERGNPGERGEPGITGL 727
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 27.7 bits (60), Expect = 3.0
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 13 HPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQ 72
HP +GE +G+ E G AG G P G E EGL+ LR+ + L +
Sbjct: 336 HPGEKGE------RGLRGEPGPQGSAGQRGEPGPKGDPGEKSHWGEGLHQLREALKILAE 389
Query: 73 RLHQL-----LEGRPLGGRCVPALTHQPA 96
R+ L L LG PA T P+
Sbjct: 390 RVLILETMIGLYEPELGSGAGPAGTGTPS 418
>gi|17158044 ribosomal protein S6 [Homo sapiens]
Length = 249
Score = 27.3 bits (59), Expect = 3.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 19 EGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEV 57
+ G +W+G V RI+GG G P + G+ + G+ +
Sbjct: 39 DALGEEWKGYVV--RISGGNDKQGFPMKQGVLTHGRVRL 75
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 27.3 bits (59), Expect = 3.9
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 15 RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEG-----QAEVEGLYLLRDGQQD 69
+P+G GAG G GG G G + GG G G QA + L + D
Sbjct: 61 KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120
Query: 70 LVQRLHQLLEGRPLGGRCVPALTHQPAS 97
LL P GGR A P S
Sbjct: 121 SGGSRPPLL---PPGGRSTSAKPFSPPS 145
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 27.3 bits (59), Expect = 3.9
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 15 RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEG-----QAEVEGLYLLRDGQQD 69
+P+G GAG G GG G G + GG G G QA + L + D
Sbjct: 61 KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120
Query: 70 LVQRLHQLLEGRPLGGRCVPALTHQPAS 97
LL P GGR A P S
Sbjct: 121 SGGSRPPLL---PPGGRSTSAKPFSPPS 145
>gi|62422577 neurobeachin [Homo sapiens]
Length = 2946
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 18 GEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEG 59
G G Q G++A GG G +G GG G G E+ G
Sbjct: 9 GPGLEPQPVGLIAVGAAGGGGGGSG---GGGTGGSGMGELRG 47
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 14 PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEG 59
P P+GE +G++ ED G G GV RG G G+ +G
Sbjct: 1209 PGPDGEHGEKGQEGLMGEDGPPGPPGVTGV--RGPEGKSGKQGEKG 1252
>gi|49355781 abhydrolase domain containing 13 [Homo sapiens]
Length = 337
Score = 27.3 bits (59), Expect = 3.9
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 43 VPTRGGIGSEGQAEVEGLYLLRDGQQDLVQRLHQL------LEGRPLGG 85
V RG SEG+A EGLYL + D V L L GR LGG
Sbjct: 148 VDYRGYGKSEGEASEEGLYLDSEAVLDYVMTRPDLDKTKIFLFGRSLGG 196
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 15 RPEGEGAGSQWQGVVAED---RIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
R + WQGV + +GG G G ++GG+G +GQ GL
Sbjct: 122 RHGADAVRGSWQGVPGHNGAWETSGGHGIFG--SQGGLGGQGQGNPGGL 168
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 15 RPEGEGAGSQWQGVVAED---RIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
R + WQGV + +GG G G ++GG+G +GQ GL
Sbjct: 122 RHGADAVRGSWQGVPGHNGAWETSGGHGIFG--SQGGLGGQGQGNPGGL 168
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 15 RPEGEGAGSQWQGVVAED---RIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
R + WQGV + +GG G G ++GG+G +GQ GL
Sbjct: 122 RHGADAVRGSWQGVPGHNGAWETSGGHGIFG--SQGGLGGQGQGNPGGL 168
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,809,765
Number of Sequences: 37866
Number of extensions: 350456
Number of successful extensions: 1339
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 123
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.