Guide to the Human Genome
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Search of human proteins with 239748704

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748704 PREDICTED: hypothetical protein XP_002346777 [Homo
sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754182 PREDICTED: hypothetical protein [Homo sapiens]           287   2e-78
gi|239748704 PREDICTED: hypothetical protein XP_002346777 [Homo ...   287   2e-78
gi|239742735 PREDICTED: hypothetical protein XP_002342625 [Homo ...   287   2e-78
gi|4504733 insulin receptor substrate 4 [Homo sapiens]                 30   0.79 
gi|148276998 zinc finger protein 628 [Homo sapiens]                    30   0.79 
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s...    29   1.4  
gi|32261309 G protein-coupled receptor 135 [Homo sapiens]              29   1.4  
gi|40018612 MyoD family inhibitor domain containing protein isof...    29   1.4  
gi|169162518 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|169162027 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|169161198 PREDICTED: hypothetical protein [Homo sapiens]            28   1.8  
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]       28   1.8  
gi|22748979 transmembrane protein 199 [Homo sapiens]                   28   1.8  
gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]            28   2.3  
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    28   2.3  
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    28   2.3  
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    28   2.3  
gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo sap...    28   3.0  
gi|42518080 transcription factor 7 (T-cell specific, HMG-box) is...    28   3.0  
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       28   3.0  
gi|50511941 EMI domain containing 1 [Homo sapiens]                     28   3.0  
gi|17158044 ribosomal protein S6 [Homo sapiens]                        27   3.9  
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    27   3.9  
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ...    27   3.9  
gi|62422577 neurobeachin [Homo sapiens]                                27   3.9  
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               27   3.9  
gi|49355781 abhydrolase domain containing 13 [Homo sapiens]            27   3.9  
gi|186928829 dermokine isoform 4 precursor [Homo sapiens]              27   3.9  
gi|186928827 dermokine isoform 5 precursor [Homo sapiens]              27   3.9  
gi|186928825 dermokine isoform 3 precursor [Homo sapiens]              27   3.9  

>gi|239754182 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  287 bits (735), Expect = 2e-78
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL
Sbjct: 1   MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60

Query: 61  YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
           YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL
Sbjct: 61  YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120

Query: 121 HRDARIRGAPEGEDLP 136
           HRDARIRGAPEGEDLP
Sbjct: 121 HRDARIRGAPEGEDLP 136


>gi|239748704 PREDICTED: hypothetical protein XP_002346777 [Homo
           sapiens]
          Length = 136

 Score =  287 bits (735), Expect = 2e-78
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL
Sbjct: 1   MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60

Query: 61  YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
           YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL
Sbjct: 61  YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120

Query: 121 HRDARIRGAPEGEDLP 136
           HRDARIRGAPEGEDLP
Sbjct: 121 HRDARIRGAPEGEDLP 136


>gi|239742735 PREDICTED: hypothetical protein XP_002342625 [Homo
           sapiens]
          Length = 136

 Score =  287 bits (735), Expect = 2e-78
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL
Sbjct: 1   MCLHSLEPCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60

Query: 61  YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120
           YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL
Sbjct: 61  YLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQPASQLWGAVWGSVHPMSLPQQREQLL 120

Query: 121 HRDARIRGAPEGEDLP 136
           HRDARIRGAPEGEDLP
Sbjct: 121 HRDARIRGAPEGEDLP 136


>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
          Length = 1257

 Score = 29.6 bits (65), Expect = 0.79
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 15  RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQ 67
           R  G G GS  QG  +           G  +RGG GS GQ    G    RDGQ
Sbjct: 499 RGSGGGQGSNGQGSSSHSSGGNQCSGEGQGSRGGQGSNGQGS-GGNQCSRDGQ 550


>gi|148276998 zinc finger protein 628 [Homo sapiens]
          Length = 1055

 Score = 29.6 bits (65), Expect = 0.79
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 18  GEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQA 55
           G G G   QG  A  +   GAG   +P  GG+G +G A
Sbjct: 747 GAGGGRARQGPRAVGKAGQGAGVVWLPGPGGLGVQGAA 784


>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
           sapiens]
          Length = 1183

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 16  PEGEGAGSQWQGVV---AEDRIAGGAGAAGVPTRGGIGSEG 53
           P   G  S W   V   A DR AG AGA    T G +GS G
Sbjct: 777 PLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817


>gi|32261309 G protein-coupled receptor 135 [Homo sapiens]
          Length = 494

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 17/62 (27%)

Query: 35  AGGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQRLHQLLEGRPLGGRCVPALTHQ 94
           A G G A  P  GG+G  G A   G  +                  RPLG    P L+H 
Sbjct: 58  ASGGGTAAAPGGGGLGGSGAAREAGAAV-----------------RRPLGPEAAPLLSHG 100

Query: 95  PA 96
            A
Sbjct: 101 AA 102


>gi|40018612 MyoD family inhibitor domain containing protein isoform
           p40 [Homo sapiens]
          Length = 355

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 7   EPCSCLHP--------RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVE 58
           E  S LHP        RP G  A  Q +G  + +R   GAG A  P  G +G +  AE  
Sbjct: 74  EAVSSLHPAPHSPSSVRPAGRRARRQRRGAGSAERPMSGAGEALAP--GPVGPQRVAEAG 131

Query: 59  G 59
           G
Sbjct: 132 G 132


>gi|169162518 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 8   PCSCLHPRPEGEGAGSQ----WQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           PC  L  RP+   AG Q     +G + +     G GAA    RG +    +AEV G+
Sbjct: 132 PCQALRGRPQIPHAGVQNVCDAEGGLFDGGGVQGEGAAAWAGRGAVSGRPEAEVGGV 188


>gi|169162027 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 8   PCSCLHPRPEGEGAGSQ----WQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           PC  L  RP+   AG Q     +G + +     G GAA    RG +    +AEV G+
Sbjct: 132 PCQALRGRPQIPHAGVQNVCDAEGGLFDGGGVQGEGAAAWAGRGAVSGRPEAEVGGV 188


>gi|169161198 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 8   PCSCLHPRPEGEGAGSQ----WQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           PC  L  RP+   AG Q     +G + +     G GAA    RG +    +AEV G+
Sbjct: 132 PCQALRGRPQIPHAGVQNVCDAEGGLFDGGGVQGEGAAAWAGRGAVSGRPEAEVGGV 188


>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
          Length = 957

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 26  QGVVAEDRIAGGAGAAGVP-TRGGIGSEGQAEVEGL 60
           QG+       G  G  G P  RG IGS+G++ V+GL
Sbjct: 724 QGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGL 759


>gi|22748979 transmembrane protein 199 [Homo sapiens]
          Length = 208

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 40 AAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQR-----LHQLLEG 80
          A G   +GG  S G   +    L+RD  Q L +R     LH+LLEG
Sbjct: 37 ALGKKHKGGDSSSGPQRLVSFRLIRDLHQHLRERDSKLYLHELLEG 82


>gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 8   PCSCLHPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPT 45
           P  C  P+  GEG G +  G V  + + GG GA    T
Sbjct: 71  PALCSSPKASGEGVGGE--GKVTGECLVGGRGAGWAQT 106


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
            sapiens]
          Length = 1691

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 14   PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
            P P GE      +G   +D I G AG  G P + G G+ G   + GL
Sbjct: 1160 PGPPGE------KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
            sapiens]
          Length = 1685

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 14   PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
            P P GE      +G   +D I G AG  G P + G G+ G   + GL
Sbjct: 1160 PGPPGE------KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
            sapiens]
          Length = 1688

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 14   PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
            P P GE      +G   +D I G AG  G P + G G+ G   + GL
Sbjct: 1160 PGPPGE------KGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGL 1200


>gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo
           sapiens]
          Length = 796

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 19  EGAGSQWQGVVAEDRIAGGAGAAGVP-TRGGIGSEGQAEVEG 59
           E AGS W+ +    R+    G  G P +R   G  G A  EG
Sbjct: 618 EDAGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEG 659


>gi|42518080 transcription factor 7 (T-cell specific, HMG-box)
          isoform 1 [Homo sapiens]
          Length = 384

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 16 PEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEG 59
          PE + A  +   V   +  AGGAG  GVP   G G+ G+AE  G
Sbjct: 44 PERDLAELKSSLVNESEGAAGGAGIPGVP-GAGAGARGEAEALG 86



 Score = 27.3 bits (59), Expect = 3.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 36 GGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQRL 74
          G AG AG+P   G G+  + E E L     G++   QRL
Sbjct: 61 GAAGGAGIPGVPGAGAGARGEAEAL-----GREHAAQRL 94


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 14  PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           P P GEG     QGV  +    G  G  G   RG  G  G+  + GL
Sbjct: 683 PGPPGEGGKPGDQGVPGDPGAVGPLGPRG--ERGNPGERGEPGITGL 727


>gi|50511941 EMI domain containing 1 [Homo sapiens]
          Length = 443

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 13  HPRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEGLYLLRDGQQDLVQ 72
           HP  +GE      +G+  E    G AG  G P   G   E     EGL+ LR+  + L +
Sbjct: 336 HPGEKGE------RGLRGEPGPQGSAGQRGEPGPKGDPGEKSHWGEGLHQLREALKILAE 389

Query: 73  RLHQL-----LEGRPLGGRCVPALTHQPA 96
           R+  L     L    LG    PA T  P+
Sbjct: 390 RVLILETMIGLYEPELGSGAGPAGTGTPS 418


>gi|17158044 ribosomal protein S6 [Homo sapiens]
          Length = 249

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 19 EGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEV 57
          +  G +W+G V   RI+GG    G P + G+ + G+  +
Sbjct: 39 DALGEEWKGYVV--RISGGNDKQGFPMKQGVLTHGRVRL 75


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 15  RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEG-----QAEVEGLYLLRDGQQD 69
           +P+G GAG    G        GG G  G  + GG G  G     QA +  L    +   D
Sbjct: 61  KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120

Query: 70  LVQRLHQLLEGRPLGGRCVPALTHQPAS 97
                  LL   P GGR   A    P S
Sbjct: 121 SGGSRPPLL---PPGGRSTSAKPFSPPS 145


>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 15  RPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEG-----QAEVEGLYLLRDGQQD 69
           +P+G GAG    G        GG G  G  + GG G  G     QA +  L    +   D
Sbjct: 61  KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120

Query: 70  LVQRLHQLLEGRPLGGRCVPALTHQPAS 97
                  LL   P GGR   A    P S
Sbjct: 121 SGGSRPPLL---PPGGRSTSAKPFSPPS 145


>gi|62422577 neurobeachin [Homo sapiens]
          Length = 2946

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 18 GEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEG 59
          G G   Q  G++A     GG G +G    GG G  G  E+ G
Sbjct: 9  GPGLEPQPVGLIAVGAAGGGGGGSG---GGGTGGSGMGELRG 47


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 14   PRPEGEGAGSQWQGVVAEDRIAGGAGAAGVPTRGGIGSEGQAEVEG 59
            P P+GE      +G++ ED   G  G  GV  RG  G  G+   +G
Sbjct: 1209 PGPDGEHGEKGQEGLMGEDGPPGPPGVTGV--RGPEGKSGKQGEKG 1252


>gi|49355781 abhydrolase domain containing 13 [Homo sapiens]
          Length = 337

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 43  VPTRGGIGSEGQAEVEGLYLLRDGQQDLVQRLHQL------LEGRPLGG 85
           V  RG   SEG+A  EGLYL  +   D V     L      L GR LGG
Sbjct: 148 VDYRGYGKSEGEASEEGLYLDSEAVLDYVMTRPDLDKTKIFLFGRSLGG 196


>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
          Length = 386

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 15  RPEGEGAGSQWQGVVAED---RIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           R   +     WQGV   +     +GG G  G  ++GG+G +GQ    GL
Sbjct: 122 RHGADAVRGSWQGVPGHNGAWETSGGHGIFG--SQGGLGGQGQGNPGGL 168


>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
          Length = 398

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 15  RPEGEGAGSQWQGVVAED---RIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           R   +     WQGV   +     +GG G  G  ++GG+G +GQ    GL
Sbjct: 122 RHGADAVRGSWQGVPGHNGAWETSGGHGIFG--SQGGLGGQGQGNPGGL 168


>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
          Length = 416

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 15  RPEGEGAGSQWQGVVAED---RIAGGAGAAGVPTRGGIGSEGQAEVEGL 60
           R   +     WQGV   +     +GG G  G  ++GG+G +GQ    GL
Sbjct: 122 RHGADAVRGSWQGVPGHNGAWETSGGHGIFG--SQGGLGGQGQGNPGGL 168


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,809,765
Number of Sequences: 37866
Number of extensions: 350456
Number of successful extensions: 1339
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 123
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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