Guide to the Human Genome
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Name: LOC100291887 Sequence: fasta or formatted (129aa) NCBI GI: 239757181
Description:

PREDICTED: hypothetical protein XP_002345195

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            23.3         30           3
 C cysteine            3.1          4           1
 D aspartate           0.0          0           0
 E glutamate           0.8          1           1
 F phenylalanine       0.8          1           1
 G glycine             5.4          7           1
 H histidine           1.6          2           1
 I isoleucine          0.8          1           1
 K lysine              5.4          7           2
 L leucine             4.7          6           1
 M methionine          2.3          3           1
 N asparagine          0.0          0           0
 P proline             7.8         10           3
 Q glutamine           1.6          2           1
 R arginine            9.3         12           2
 S serine             19.4         25           2
 T threonine           7.8         10           1
 V valine              1.6          2           1
 W tryptophan          3.9          5           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345195 
LOC100287051          1.000   PREDICTED: hypothetical protein 
LOC100287051          1.000   PREDICTED: hypothetical protein XP_002343673 
LOC100292325          0.500   PREDICTED: hypothetical protein 
LOC100290350          0.500   PREDICTED: hypothetical protein XP_002347608 
LOC100288183          0.500   PREDICTED: hypothetical protein XP_002343427 
LOC100129010          0.342   PREDICTED: hypothetical protein 
LOC100129010          0.342   PREDICTED: hypothetical protein 
LOC100129010          0.342   PREDICTED: hypothetical protein 
LOC100292370          0.060   PREDICTED: hypothetical protein 
MICALL2               0.060   MICAL-like 2 isoform 1 
HOXD13                0.051   homeobox D13 
TNRC18                0.047   trinucleotide repeat containing 18 
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prote...
RNPS1                 0.043   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.043   RNA-binding protein S1, serine-rich domain 
LOC100289242          0.043   PREDICTED: hypothetical protein XP_002342243 
KRTAP4-9              0.038   PREDICTED: keratin associated protein 4-9 
LOC100133756          0.038   PREDICTED: hypothetical protein, partial 
LOC100289316          0.038   PREDICTED: hypothetical protein 
KRTAP4-6              0.038   PREDICTED: keratin associated protein 4.6 
LOC100289316          0.038   PREDICTED: hypothetical protein XP_002343619 
ZC3H18                0.038   zinc finger CCCH-type containing 18 
SETD1A                0.034   SET domain containing 1A 
DGKI                  0.034   diacylglycerol kinase, iota 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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