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Search of human proteins with 239748356
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748356 PREDICTED: hypothetical protein XP_002346638 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753799 PREDICTED: hypothetical protein XP_002345781 [Homo ... 250 1e-67
gi|239748356 PREDICTED: hypothetical protein XP_002346638 [Homo ... 250 1e-67
gi|239742256 PREDICTED: hypothetical protein XP_002342462 [Homo ... 250 1e-67
gi|62244004 modulator of estrogen induced transcription isoform ... 33 0.063
gi|63176611 modulator of estrogen induced transcription isoform ... 33 0.063
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|8923477 transmembrane protein 160 [Homo sapiens] 32 0.14
gi|88501741 TRIO and F-actin binding protein isoform 2 [Homo sap... 31 0.18
gi|88501740 TRIO and F-actin binding protein isoform 1 [Homo sap... 31 0.18
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 31 0.24
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 31 0.24
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 30 0.41
gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo ... 30 0.53
gi|239748121 PREDICTED: hypothetical protein XP_002346534 [Homo ... 30 0.53
gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo ... 30 0.53
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 30 0.53
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 30 0.53
gi|24430192 keratin 16 [Homo sapiens] 29 0.70
gi|134244285 Notch homolog 3 [Homo sapiens] 28 1.2
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 28 1.2
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 28 1.2
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 28 1.2
gi|157785645 SPEG complex locus [Homo sapiens] 28 1.2
gi|17149834 sortilin 1 preproprotein [Homo sapiens] 28 1.5
gi|221136834 transducin-like enhancer of split 6 isoform 1 [Homo... 28 1.5
gi|13376099 transducin-like enhancer of split 6 isoform 2 [Homo ... 28 1.5
gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo ... 28 2.0
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 28 2.0
gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo ... 28 2.0
>gi|239753799 PREDICTED: hypothetical protein XP_002345781 [Homo
sapiens]
Length = 143
Score = 250 bits (639), Expect = 1e-67
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP 60
MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP
Sbjct: 1 MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP 60
Query: 61 ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF 118
ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF
Sbjct: 61 ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF 118
>gi|239748356 PREDICTED: hypothetical protein XP_002346638 [Homo
sapiens]
Length = 118
Score = 250 bits (639), Expect = 1e-67
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP 60
MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP
Sbjct: 1 MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP 60
Query: 61 ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF 118
ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF
Sbjct: 61 ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF 118
>gi|239742256 PREDICTED: hypothetical protein XP_002342462 [Homo
sapiens]
Length = 143
Score = 250 bits (639), Expect = 1e-67
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP 60
MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP
Sbjct: 1 MIKRLRKTEMLRPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERP 60
Query: 61 ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF 118
ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF
Sbjct: 61 ELRLERRGVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCGSCLLFF 118
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 32.7 bits (73), Expect = 0.063
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 23/103 (22%)
Query: 6 RKTEMLRPKR----------RGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWG 55
R+T + RP+R RGA G S G+G RE R GV G
Sbjct: 876 RETRVERPERSGREVSGHSVRGAPPGNRSSASGYGSREGDR----------GVITDRGGG 925
Query: 56 CRERPELR--LERRGVQGESFPRKSRPSPHLRGGSCRDSAGLG 96
+ PE R +ER G + S PRK P +G S D+ +G
Sbjct: 926 SQHYPEERHVVERHG-RDTSGPRKEWHGPPSQGPSYHDTRRMG 967
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 32.7 bits (73), Expect = 0.063
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 23/103 (22%)
Query: 6 RKTEMLRPKR----------RGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWG 55
R+T + RP+R RGA G S G+G RE R GV G
Sbjct: 894 RETRVERPERSGREVSGHSVRGAPPGNRSSASGYGSREGDR----------GVITDRGGG 943
Query: 56 CRERPELR--LERRGVQGESFPRKSRPSPHLRGGSCRDSAGLG 96
+ PE R +ER G + S PRK P +G S D+ +G
Sbjct: 944 SQHYPEERHVVERHG-RDTSGPRKEWHGPPSQGPSYHDTRRMG 985
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 60 PELRLERRGVQ-------GESFPRKSRPSPHLRGGSCRDSAGLG 96
P LRL RR Q G S +RPSPHL G C LG
Sbjct: 46 PALRLPRRRAQLGVKLGGGPSPASGARPSPHLEGAGCETRPWLG 89
>gi|8923477 transmembrane protein 160 [Homo sapiens]
Length = 188
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 2 IKRLRKTEMLRPKRRGATEGWGGSFR-GHGDRENGRPPEASERPR 45
+ RLR L P +R + G GSF GHG R PP SE R
Sbjct: 13 LARLRFRRSLLPPQRPRSGGARGSFAPGHGPRAGASPPPVSELDR 57
>gi|88501741 TRIO and F-actin binding protein isoform 2 [Homo
sapiens]
Length = 431
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 14 KRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGES 73
+RR A G GG G G R P RPR + L WG P+L ++G
Sbjct: 19 RRRAAERGGGG---GGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTPDLLNFKKGWMSIL 75
Query: 74 FPRKSRPSPHL 84
PSP L
Sbjct: 76 DEPGEPPSPSL 86
>gi|88501740 TRIO and F-actin binding protein isoform 1 [Homo
sapiens]
Length = 652
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 14 KRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGES 73
+RR A G GG G G R P RPR + L WG P+L ++G
Sbjct: 19 RRRAAERGGGG---GGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTPDLLNFKKGWMSIL 75
Query: 74 FPRKSRPSPHL 84
PSP L
Sbjct: 76 DEPGEPPSPSL 86
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 12 RPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQG 71
R +RR + G R HG R R + R R + ++ + E R +R G++
Sbjct: 15 RGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRR---RRRSRERRSDSEEERWQRSGMRS 71
Query: 72 ESFPRKSRPSPHLRGGSCRDSAG 94
S P RP H R GS + +G
Sbjct: 72 RSPP---RPKWHSRDGSSQSDSG 91
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 12 RPKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQG 71
R +RR + G R HG R R + R R + ++ + E R +R G++
Sbjct: 15 RGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRR---RRRSRERRSDSEEERWQRSGMRS 71
Query: 72 ESFPRKSRPSPHLRGGSCRDSAG 94
S P RP H R GS + +G
Sbjct: 72 RSPP---RPKWHSRDGSSQSDSG 91
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 25 SFRGHGDRENGRP---PEASERPRYGVKLKASWG-CRERPELRLERRGVQGESFPRKSRP 80
S RG G RE RP P A R R + + E P+ R +R G R
Sbjct: 1106 SGRGRGLREFARPEDCPRAKPRRRVASETHSEGSEYEELPKRRRQRGSENGNEGSLLERE 1165
Query: 81 SPHLRGGSCRDS 92
L+ G CRDS
Sbjct: 1166 ESTLKKGDCRDS 1177
>gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo
sapiens]
Length = 202
Score = 29.6 bits (65), Expect = 0.53
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 33/113 (29%)
Query: 22 WGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRG-----VQGESFPR 76
WG RGH RPP R SW C RP RL G V +
Sbjct: 103 WGA--RGH------RPPSGPAR---------SWACGARPPWRLAPAGHPATPVAAAAAGS 145
Query: 77 KSRPSPHLRGGS------CRDSAGL-GSCLSVTRRPADSL----VCGSCLLFF 118
+ P+P LR GS ++++GL G ++ R L C +C +FF
Sbjct: 146 ATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATRSRSLLRRRCPCCACSVFF 198
>gi|239748121 PREDICTED: hypothetical protein XP_002346534 [Homo
sapiens]
Length = 202
Score = 29.6 bits (65), Expect = 0.53
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 33/113 (29%)
Query: 22 WGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRG-----VQGESFPR 76
WG RGH RPP R SW C RP RL G V +
Sbjct: 103 WGA--RGH------RPPSGPAR---------SWACGARPPWRLAPAGHPATPVAAAAAGS 145
Query: 77 KSRPSPHLRGGS------CRDSAGL-GSCLSVTRRPADSL----VCGSCLLFF 118
+ P+P LR GS ++++GL G ++ R L C +C +FF
Sbjct: 146 ATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATRSRSLLRRRCPCCACSVFF 198
>gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo
sapiens]
Length = 202
Score = 29.6 bits (65), Expect = 0.53
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 33/113 (29%)
Query: 22 WGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRG-----VQGESFPR 76
WG RGH RPP R SW C RP RL G V +
Sbjct: 103 WGA--RGH------RPPSGPAR---------SWACGARPPWRLAPAGHPATPVAAAAAGS 145
Query: 77 KSRPSPHLRGGS------CRDSAGL-GSCLSVTRRPADSL----VCGSCLLFF 118
+ P+P LR GS ++++GL G ++ R L C +C +FF
Sbjct: 146 ATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATRSRSLLRRRCPCCACSVFF 198
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 0.53
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 17 GATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGESFPR 76
G+ G GG HG R RPP A RP S G R R G +G+S R
Sbjct: 446 GSERGHGG----HGKRAKERPPRA--RP---ASTSPSPGAHGR------RGGPEGKSSSR 490
Query: 77 KSRPSPHLRGGSCRDSAGLGSCLSVTRRP 105
P PH R S S S +RP
Sbjct: 491 S--PGPHPRSWSSSRSPSKSRSRSAEKRP 517
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 29.6 bits (65), Expect = 0.53
Identities = 29/93 (31%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 13 PKRRGATEGWGGSFRGHGDRENGRPPEASERPRYGVK-----LKASWGCRERPELRL--- 64
P+R G G G F GH RE G P S RPR L+ G LR
Sbjct: 1302 PERGGGAGGAGLHFAGHRRREEGPAPTGS-RPRGAADQELELLRECLGAAVPARLRKVAS 1360
Query: 65 ----ERRGVQGESFPRKSRPSPHLRGGSCRDSA 93
RR + + P+P SC DSA
Sbjct: 1361 ALVPGRRALPVPVYMLVPAPAPAQEDDSCTDSA 1393
>gi|24430192 keratin 16 [Homo sapiens]
Length = 473
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 68 GVQGESFPRKSRPSPHLRGGSCRDSAGLGSCLSVTRRPADSLVCG 112
G+ G SR S L GGSCR + G LSV+ R + CG
Sbjct: 19 GIGGGIGGGSSRISSVLAGGSCRAPSTYGGGLSVSSRFSSGGACG 63
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 80 PSPHLRGGSCRDSAGLGSC 98
P+P L GGSC+D G SC
Sbjct: 855 PNPCLNGGSCQDGVGSFSC 873
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 27 RGHGDR--ENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGESFPRKSRPSPHL 84
RG G++ ++ + P A PR G+ + ++GCR +R+ + P P L
Sbjct: 318 RGAGEQKDQSAQGPAAQPHPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPAL 377
Query: 85 RGG----SCRDSAGLGSCLSVTRRPADSLVCGSC 114
G R + G G C ++ RP G C
Sbjct: 378 AGAPPTPQQRQNFGPG-CAGLSPRPEGPHGAGGC 410
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 17 GATEGWGGSFRGHGDRENGRPPEASERPRYGVKLK-ASWGCRERPELRLERRGVQGESFP 75
G + GG + + + R P RPR + + AS G PE R R+G+ G S
Sbjct: 129 GNSRAGGGLTKYNSAHSSSRVP----RPRLPSQRRGASCGLGPGPESRAARQGLGGRSAR 184
Query: 76 RKSRPSPH 83
++R PH
Sbjct: 185 ARTRRGPH 192
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 17 GATEGWGGSFRGHGDRENGRPPEASERPRYGVKLK-ASWGCRERPELRLERRGVQGESFP 75
G + GG + + + R P RPR + + AS G PE R R+G+ G S
Sbjct: 129 GNSRAGGGLTKYNSAHSSSRVP----RPRLPSQRRGASCGLGPGPESRAARQGLGGRSAR 184
Query: 76 RKSRPSPH 83
++R PH
Sbjct: 185 ARTRRGPH 192
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 17 GATEGWGGSFRGHGDRENGRPPEASERPRYGVKLK-ASWGCRERPELRLERRGVQGESFP 75
G + GG + + + R P RPR + + AS G PE R R+G+ G S
Sbjct: 129 GNSRAGGGLTKYNSAHSSSRVP----RPRLPSQRRGASCGLGPGPESRAARQGLGGRSAR 184
Query: 76 RKSRPSPH 83
++R PH
Sbjct: 185 ARTRRGPH 192
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 18 ATEGWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGESFPRK 77
AT G G+ +N PEA +R R G + WG +RRG + + R+
Sbjct: 644 ATPGLEGAAVPQTLEKNRAGPEAEKRLRRGPEEDGPWG-------PWDRRGARSQGKGRR 696
Query: 78 SRP-SPHL 84
+RP SP L
Sbjct: 697 ARPTSPEL 704
>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
Length = 831
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 31 DRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGESFPRKSR 79
DR + PP A+ PR+ + SWG R G +FPR R
Sbjct: 35 DRLDAPPPPAAPLPRWSGPIGVSWGL---------RAAAAGGAFPRGGR 74
>gi|221136834 transducin-like enhancer of split 6 isoform 1 [Homo
sapiens]
Length = 572
Score = 28.1 bits (61), Expect = 1.5
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 9 EMLRPKRRGATEGWGGSFRGHGDRENG-----------RPPEASERPRYGVK-LKASWGC 56
E +P+ R G G + G + G RPPEAS P G + SWG
Sbjct: 173 EKAKPRDRQQAPGLGQESKAPGSCDPGTDPCPEDASTPRPPEASSSPPEGSQDRNTSWGV 232
Query: 57 RERPELRLER 66
+ P R R
Sbjct: 233 VQEPPGRASR 242
>gi|13376099 transducin-like enhancer of split 6 isoform 2 [Homo
sapiens]
Length = 449
Score = 28.1 bits (61), Expect = 1.5
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 9 EMLRPKRRGATEGWGGSFRGHGDRENG-----------RPPEASERPRYGVK-LKASWGC 56
E +P+ R G G + G + G RPPEAS P G + SWG
Sbjct: 50 EKAKPRDRQQAPGLGQESKAPGSCDPGTDPCPEDASTPRPPEASSSPPEGSQDRNTSWGV 109
Query: 57 RERPELRLER 66
+ P R R
Sbjct: 110 VQEPPGRASR 119
>gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo
sapiens]
Length = 300
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 21 GWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGESFPRKSRP 80
G G + G G R+ +PP A+ PR G R RRG +G + ++ R
Sbjct: 22 GGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGG--------RALRRGGRGAARRKRKRR 73
Query: 81 SP----HLRG 86
+P H RG
Sbjct: 74 APAPVCHHRG 83
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 12 RPKRRGATEGWG-----GSFRGHGDRENGRPPEASERPRYGVKLKASW 54
RP+R G WG GS G G PP A P G L+ +W
Sbjct: 43 RPRRAGRGRRWGSLGTNGSLTGRGPGSPPLPPSAGPAPPPG--LREAW 88
>gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
Length = 300
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 21 GWGGSFRGHGDRENGRPPEASERPRYGVKLKASWGCRERPELRLERRGVQGESFPRKSRP 80
G G + G G R+ +PP A+ PR G R RRG +G + ++ R
Sbjct: 22 GGGAAEAGRGPRQRFQPPAAASLPRIGSAPPGGG--------RALRRGGRGAARRKRKRR 73
Query: 81 SP----HLRG 86
+P H RG
Sbjct: 74 APAPVCHHRG 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,710,433
Number of Sequences: 37866
Number of extensions: 288906
Number of successful extensions: 1034
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 86
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.