Guide to the Human Genome
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Name: LOC100291654 Sequence: fasta or formatted (143aa) NCBI GI: 239753799
Description:

PREDICTED: hypothetical protein XP_002345781

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          5           1
 C cysteine            4.9          7           1
 D aspartate           3.5          5           1
 E glutamate           6.3          9           1
 F phenylalanine       4.2          6           2
 G glycine            12.6         18           2
 H histidine           1.4          2           1
 I isoleucine          1.4          2           1
 K lysine              4.2          6           1
 L leucine            11.2         16           2
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline             8.4         12           2
 Q glutamine           0.7          1           1
 R arginine           14.7         21           2
 S serine             11.2         16           1
 T threonine           2.1          3           1
 V valine              4.2          6           1
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345781 
LOC100289434          1.000   PREDICTED: hypothetical protein XP_002342462 
LOC100290719          0.804   PREDICTED: hypothetical protein XP_002346638 
SLTM                  0.029   modulator of estrogen induced transcription isoform ...
SLTM                  0.029   modulator of estrogen induced transcription isoform ...
LOC100129098          0.025   PREDICTED: hypothetical protein 
TMEM160               0.025   transmembrane protein 160 
TRIOBP                0.021   TRIO and F-actin binding protein isoform 2 
TRIOBP                0.021   TRIO and F-actin binding protein isoform 1 
C19orf29              0.021   chromosome 19 open reading frame 29 
C19orf29              0.021   chromosome 19 open reading frame 29 
BAT2L                 0.018   HLA-B associated transcript 2-like 
LOC100291594          0.018   PREDICTED: hypothetical protein XP_002345692 
LOC100289769          0.018   PREDICTED: hypothetical protein XP_002346534 
LOC100287401          0.018   PREDICTED: hypothetical protein XP_002342373 
FLJ37078              0.018   hypothetical protein LOC222183 
APC2                  0.018   adenomatosis polyposis coli 2 
KRT16                 0.014   keratin 16 
NOTCH3                0.011   Notch homolog 3 
LOC100293005          0.011   PREDICTED: hypothetical protein 
LOC100291624          0.011   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.011   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.011   PREDICTED: hypothetical protein XP_002342583 
SPEG                  0.011   SPEG complex locus 
SORT1                 0.011   sortilin 1 preproprotein 
TLE6                  0.011   transducin-like enhancer of split 6 isoform 1 [Homo...
TLE6                  0.011   transducin-like enhancer of split 6 isoform 2 
LOC100291311          0.011   PREDICTED: hypothetical protein XP_002347439 
LOC100288426          0.011   PREDICTED: hypothetical protein XP_002343430 
LOC100289410          0.011   PREDICTED: hypothetical protein XP_002344274 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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