Guide to the Human Genome
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Name: TRIOBP Sequence: fasta or formatted (431aa) NCBI GI: 88501741
Description:

TRIO and F-actin binding protein isoform 2

Referenced in:

Myosin
Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [2365aa] TRIO and F-actin binding protein isoform 6
alt prot [652aa] TRIO and F-actin binding protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         35           2
 C cysteine            0.7          3           1
 D aspartate           4.6         20           1
 E glutamate           9.0         39           2
 F phenylalanine       0.9          4           1
 G glycine             9.3         40           8
 H histidine           1.2          5           1
 I isoleucine          2.6         11           1
 K lysine              5.3         23           2
 L leucine             9.7         42           3
 M methionine          0.9          4           1
 N asparagine          1.9          8           1
 P proline             9.0         39           3
 Q glutamine           5.3         23           2
 R arginine           10.0         43           3
 S serine              7.4         32           2
 T threonine           6.0         26           3
 V valine              3.9         17           1
 W tryptophan          2.1          9           1
 Y tyrosine            1.9          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TRIO and F-actin binding protein isoform 2 
TRIOBP                0.917   TRIO and F-actin binding protein isoform 1 
TRIOBP                0.764   TRIO and F-actin binding protein isoform 6 
MPRIP                 0.248   myosin phosphatase-Rho interacting protein isoform 2...
MPRIP                 0.248   myosin phosphatase-Rho interacting protein isoform 1...
AFAP1L2               0.029   KIAA1914 protein isoform 1 
AFAP1L2               0.029   KIAA1914 protein isoform 2 
DEF6                  0.027   differentially expressed in FDCP 6 homolog 
MYO10                 0.027   myosin X 
SWAP70                0.025   SWAP-70 protein 
BMX                   0.022   BMX non-receptor tyrosine kinase 
BMX                   0.022   BMX non-receptor tyrosine kinase 
SPTBN4                0.022   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
DOCK10                0.022   dedicator of cytokinesis 10 
IPCEF1                0.020   phosphoinositide-binding protein PIP3-E isoform 1 [...
IPCEF1                0.020   phosphoinositide-binding protein PIP3-E isoform 1 [...
IPCEF1                0.020   phosphoinositide-binding protein PIP3-E isoform 2 [H...
LOC100130360          0.019   PREDICTED: hypothetical protein 
PLEKHA5               0.019   pleckstrin homology domain containing, family A mem...
PLEKHA5               0.019   pleckstrin homology domain containing, family A memb...
PLEKHH1               0.019   pleckstrin homology domain containing, family H (wit...
TCHH                  0.019   trichohyalin 
PLEKHA6               0.019   phosphoinositol 3-phosphate-binding protein-3 
OSBP                  0.018   oxysterol binding protein 
MYH14                 0.018   myosin, heavy chain 14 isoform 1 
MYH14                 0.018   myosin, heavy chain 14 isoform 2 
MYH14                 0.018   myosin, heavy chain 14 isoform 3 
PLEKHH2               0.018   pleckstrin homology domain containing, family H (wi...
PLEKHA7               0.016   pleckstrin homology domain containing, family A mem...
TBC1D2                0.016   TBC1 domain family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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