Guide to the Human Genome
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Search of human proteins with 239748243

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo ...   218   6e-58
gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo ...   218   6e-58
gi|239753730 PREDICTED: hypothetical protein [Homo sapiens]           216   3e-57
gi|239757430 PREDICTED: similar to lactation elevated 1 (predict...    45   1e-05
gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo ...    45   2e-05
gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo ...    45   2e-05
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]           36   0.006
gi|55770834 centromere protein F [Homo sapiens]                        35   0.013
gi|4758648 kinesin family member 5B [Homo sapiens]                     32   0.083
gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]         32   0.083
gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens]         32   0.083
gi|41872583 Rho-associated, coiled-coil containing protein kinas...    32   0.14 
gi|22749217 coiled-coil domain containing 63 [Homo sapiens]            32   0.14 
gi|10337581 type I hair keratin 3B [Homo sapiens]                      31   0.19 
gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]         31   0.24 
gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens]         31   0.24 
gi|55749932 desmin [Homo sapiens]                                      30   0.32 
gi|14917115 keratin 31 [Homo sapiens]                                  30   0.41 
gi|32698688 citron [Homo sapiens]                                      30   0.41 
gi|4885583 Rho-associated, coiled-coil containing protein kinase...    30   0.54 
gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo ...    30   0.54 
gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo ...    30   0.54 
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    30   0.54 
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    30   0.54 
gi|62988334 cation channel, sperm associated 4 [Homo sapiens]          30   0.54 
gi|19923442 transmembrane emp24 protein transport domain contain...    30   0.54 
gi|89353283 serologically defined colon cancer antigen 3 isoform...    29   0.70 
gi|89353281 serologically defined colon cancer antigen 3 isoform...    29   0.70 
gi|89353278 serologically defined colon cancer antigen 3 isoform...    29   0.70 
gi|14917117 keratin 33A [Homo sapiens]                                 29   0.92 

>gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo
           sapiens]
          Length = 113

 Score =  218 bits (556), Expect = 6e-58
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
           MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI
Sbjct: 1   MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60

Query: 61  IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
           IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN
Sbjct: 61  IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113


>gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo
           sapiens]
          Length = 113

 Score =  218 bits (556), Expect = 6e-58
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
           MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI
Sbjct: 1   MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60

Query: 61  IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
           IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN
Sbjct: 61  IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113


>gi|239753730 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score =  216 bits (550), Expect = 3e-57
 Identities = 112/113 (99%), Positives = 112/113 (99%)

Query: 1   MTSPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60
           MT PNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI
Sbjct: 1   MTLPNELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEI 60

Query: 61  IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113
           IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN
Sbjct: 61  IKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQSEEAN 113


>gi|239757430 PREDICTED: similar to lactation elevated 1 (predicted)
           [Homo sapiens]
          Length = 132

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 4   PNELNEAPGTNPAET-----EICNILDREFKIAVLRKLNEIQDNTEKELKVLS---DKII 55
           P + N +P      T     E+  I  R + I    KL E      KE+K L    DK++
Sbjct: 21  PKDHNSSPAREQDWTGNEFDELTEIGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLL 80

Query: 56  KEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSL 103
             I  ++ N  +++ELKN     + A  S+N R++ +EERISE+ D L
Sbjct: 81  TGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQL 128


>gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo
           sapiens]
          Length = 132

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 27  EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
           + K  VL +  E++ N EK L    DK++  I  ++ N  +++ELKN     + A  S+N
Sbjct: 57  KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111

Query: 87  KRLNLSEERISELGDSL 103
            R++ +EERISE+ D L
Sbjct: 112 SRIDQAEERISEIEDQL 128


>gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo
           sapiens]
          Length = 132

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 27  EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
           + K  VL +  E++ N EK L    DK++  I  ++ N  +++ELKN     + A  S+N
Sbjct: 57  KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111

Query: 87  KRLNLSEERISELGDSL 103
            R++ +EERISE+ D L
Sbjct: 112 SRIDQAEERISEIEDQL 128


>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
          Length = 602

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 31  AVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEIL-ELKNATDIRKNA-SGSLNKR 88
           ++LR     QD TEK +K    ++ +  E+++  Q EIL +L +   + K+A        
Sbjct: 174 SILRSSQHKQDLTEKAVKQGESEVSRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSL 233

Query: 89  LNLSEERISELGDSLFDNI 107
            N  EER++EL  S+ DNI
Sbjct: 234 ENTVEERLTELTKSINDNI 252


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 18/91 (19%)

Query: 29   KIAVLRKLNEIQDNTEKELKVLSDKIIKE----IEIIKMNQAEILELKNATDIRKNASGS 84
            +I  L+K N + +++ KEL++LS+ +  E      II +N+ EI EL       K  + S
Sbjct: 926  EIQELKKSNHLLEDSLKELQLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINAS 985

Query: 85   LN-KRLNL-------------SEERISELGD 101
            LN +++NL              E+ ISEL D
Sbjct: 986  LNQEKMNLIQKSESFANYIDEREKSISELSD 1016



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 41  DNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGS---LNKRLNLSEERIS 97
           +N EKEL++L+DK+  E       QAEI ELK +  + +++      L++ L+L ++ +S
Sbjct: 907 ENKEKELQLLNDKVETE-------QAEIQELKKSNHLLEDSLKELQLLSETLSLEKKEMS 959

Query: 98  EL 99
            +
Sbjct: 960 SI 961



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 24   LDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKN-----ATDIR 78
            ++ E KI VL+  N    +T + L+     +  E+E+ KM++   +E  N      T+++
Sbjct: 2563 VELEQKIQVLQSKNASLQDTLEVLQSSYKNLENELELTKMDKMSFVEKVNKMTAKETELQ 2622

Query: 79   KNASGSLNKRLNLSEERISE 98
            +       K   L EE   E
Sbjct: 2623 REMHEMAQKTAELQEELSGE 2642


>gi|4758648 kinesin family member 5B [Homo sapiens]
          Length = 963

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 6   ELNEAPGTNPA-ETEICNILDREFKIAVL--RKLNEIQDNTEKELKVLSDKIIKEIEIIK 62
           ELN     N A + E+  +L    ++AV   +K  E++D T KE ++LSD++ ++   + 
Sbjct: 473 ELNRLQAENDASKEEVKEVLQALEELAVNYDQKSQEVEDKT-KEYELLSDELNQKSATLA 531

Query: 63  MNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDN 106
              AE+ +LK  T+ +K  +  +   L    + ++E+G ++ +N
Sbjct: 532 SIDAELQKLKEMTNHQKKRAAEMMASL---LKDLAEIGIAVGNN 572


>gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
          Length = 284

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 19  EICNILDREFK--IAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATD 76
           E   I+D+  K  +A   K ++ +D  E+E+KVLSDK +KE E     +AE  E ++ T 
Sbjct: 195 EQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTK 248

Query: 77  IRKNASGSLNKRLNLSEERIS 97
           + K+      K  +  EE +S
Sbjct: 249 LEKSIDDLEEKVAHAKEENLS 269


>gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
          Length = 284

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 19  EICNILDREFK--IAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATD 76
           E   I+D+  K  +A   K ++ +D  E+E+KVLSDK +KE E     +AE  E ++ T 
Sbjct: 195 EQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTK 248

Query: 77  IRKNASGSLNKRLNLSEERIS 97
           + K+      K  +  EE +S
Sbjct: 249 LEKSIDDLEEKVAHAKEENLS 269


>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
            [Homo sapiens]
          Length = 1388

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 17   ETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATD 76
            + ++  + D E   A ++   E Q  TE+ LK  +   + EI    MN+ E ++  N TD
Sbjct: 1000 QEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEI----MNRKEPVKRGNDTD 1055

Query: 77   IRKNASGSLNKRLNLSEER 95
            +R+    +    + L  ER
Sbjct: 1056 VRRKEKENRKLHMELKSER 1074


>gi|22749217 coiled-coil domain containing 63 [Homo sapiens]
          Length = 563

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 29  KIAVLRKLNEIQ-DNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNK 87
           +I +LR   ++  D+    L+ L DK+ K  E   M +++  E+    D+ KN+   L K
Sbjct: 360 EIILLRSQQKLSHDDNHSVLRQLEDKLRKTTEEADMYESKYGEVSKTLDLLKNSVEKLFK 419

Query: 88  RLNLSEERI-SELGDS 102
           ++N    +I  +LG++
Sbjct: 420 KINCDATKILVQLGET 435


>gi|10337581 type I hair keratin 3B [Homo sapiens]
          Length = 404

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 6   ELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQ 65
           E++ AP  +    ++ N    +++  V     E++     + + L+ +++   E ++  Q
Sbjct: 212 EVDAAPAVDL--NQVLNETRNQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQ 269

Query: 66  AEILELK---NATDI----RKNASGSLNKRLNLSEERIS---ELGDSLFDNIQSEEA 112
           AEI+EL+   NA +I    + N   SL   L  SE R S       SL  N++S+ A
Sbjct: 270 AEIIELRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNVESQLA 326


>gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
          Length = 284

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 31  AVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLN 90
           A   K ++ +D  E+E+KVLSDK +KE E     +AE  E ++ T + K+      K  +
Sbjct: 209 AQAEKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTKLEKSIDDLEEKVAH 262

Query: 91  LSEERIS 97
             EE +S
Sbjct: 263 AKEENLS 269


>gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
          Length = 284

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 31  AVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLN 90
           A   K ++ +D  E+E+KVLSDK +KE E     +AE  E ++ T + K+      K  +
Sbjct: 209 AQAEKYSQKEDRYEEEIKVLSDK-LKEAE----TRAEFAE-RSVTKLEKSIDDLEEKVAH 262

Query: 91  LSEERIS 97
             EE +S
Sbjct: 263 AKEENLS 269


>gi|55749932 desmin [Homo sapiens]
          Length = 470

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 6   ELNEAPGTNPAETEICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQ 65
           E+N   G  P  T +  + + E +   LR+  E+  N    + V  D ++ +++ +K   
Sbjct: 139 EVNRLKGREP--TRVAELYEEELR--ELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKL 194

Query: 66  AEILELK-----NATDIRKNASGSLNKRLNLSEERISELGDSL 103
            E ++LK     N    R +   +   R++L E RI  L + +
Sbjct: 195 QEEIQLKEEAENNLAAFRADVDAATLARIDL-ERRIESLNEEI 236


>gi|14917115 keratin 31 [Homo sapiens]
          Length = 416

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 20  ICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELK---NATD 76
           + N    +++  V     E++     + + L+ +++   E ++  QAEI+EL+   NA +
Sbjct: 224 VLNETRSQYEALVETNRREVEQWFTTQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALE 283

Query: 77  I----RKNASGSLNKRLNLSEERIS---ELGDSLFDNIQSEEA 112
           I    + N   SL   L  SE R S       SL  N++S+ A
Sbjct: 284 IELQAQHNLRDSLENTLTESEARYSSQLSQVQSLITNVESQLA 326


>gi|32698688 citron [Homo sapiens]
          Length = 2027

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 33   LRKLNEIQDNTEKELKVLSDKIIKE----IEI-IKMNQAEILELKNATDIRKNASGSLNK 87
            +R+L  + D TEK+ +  +D+ I E    +E+ +K ++AEIL L+ A   +K  + SL+ 
Sbjct: 1061 VRELQRMLD-TEKQSRARADQRITESRQVVELAVKEHKAEILALQQALKEQKLKAESLSD 1119

Query: 88   RLNLSEER 95
            +LN  E++
Sbjct: 1120 KLNDLEKK 1127



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 19  EICNILDREFK--IAVLRKLNEIQDNTEKEL----KVLSDK--IIKEIEI-IKMNQAEIL 69
           E   +LD + K  +A    L  +    E+E     K+LS++  +I  ++  I+  +  I+
Sbjct: 723 EKIKVLDNQIKKDLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIV 782

Query: 70  ELKNATDIRKNASGSLNKRLNLSEERISELGDSLF 104
           EL  A  +  N+S    + +   EE ISEL    F
Sbjct: 783 ELSEANKLAANSSLFTQRNMKAQEEMISELRQQKF 817


>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
           [Homo sapiens]
          Length = 1354

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 24  LDREFKIAVLRKLNEI--QDNTEKELKVLSDKIIKEIEIIKMNQAEILE-LKNATDIRKN 80
           L +E K A  R   EI  +D+T   L+  +  + K+IEI++    E+ E +K A +  K 
Sbjct: 916 LTQESKKAASRNRQEITDKDHTVSRLEEANSMLTKDIEILRRENEELTEKMKKAEEEYK- 974

Query: 81  ASGSLNKRLNLSEERISELGDSLFDNIQSE 110
               L K     EE IS L  +   NI +E
Sbjct: 975 ----LEK-----EEEISNLKAAFEKNINTE 995


>gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo
           sapiens]
          Length = 338

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 4   PNELNEAPGTNPA--ETEICNILDREFKIAVLRKLNE-IQ------DNTEKELKVLSDKI 54
           P E + +P T  +  E +   + +  F+ +   +L E IQ      +N EK L+    +I
Sbjct: 21  PKECSSSPATEQSWMENDFDELREAGFRRSNYSELREDIQTKGKKVENFEKNLEECITRI 80

Query: 55  IKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSL 103
               + +K    E++ELK      +    SL  R +  EER+S + D +
Sbjct: 81  TNTEKCLK----ELMELKTKARELREECRSLRSRCDQLEERVSAMEDEM 125


>gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo
           sapiens]
          Length = 338

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 4   PNELNEAPGTNPA--ETEICNILDREFKIAVLRKLNE-IQ------DNTEKELKVLSDKI 54
           P E + +P T  +  E +   + +  F+ +   +L E IQ      +N EK L+    +I
Sbjct: 21  PKECSSSPATEQSWMENDFDELREAGFRRSNYSELREDIQTKGKKVENFEKNLEECITRI 80

Query: 55  IKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSL 103
               + +K    E++ELK      +    SL  R +  EER+S + D +
Sbjct: 81  TNTEKCLK----ELMELKTKARELREECRSLRSRCDQLEERVSAMEDEM 125


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 9    EAPGTNPAETEI-CNILDREFKIA------VLRKLNEIQ--DNTEKELKVLSDKIIKEI- 58
            +AP ++P    +   IL +  + A      +++KLNE +  D++ KE ++L  K+  E  
Sbjct: 3071 KAPDSSPESRRLNAQILSQRIEKAKCLCDEIIKKLNENKTFDDSFKEKEILQIKLNAEEN 3130

Query: 59   -EIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQ 108
             ++ K+ Q  +LEL       KN    L   L++  +  S+L   L  N++
Sbjct: 3131 DKLYKVLQNMVLELSPKELDEKNCQDKLETSLHVLNQIKSQLQQPLLINLE 3181


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 9    EAPGTNPAETEI-CNILDREFKIA------VLRKLNEIQ--DNTEKELKVLSDKIIKEI- 58
            +AP ++P    +   IL +  + A      +++KLNE +  D++ KE ++L  K+  E  
Sbjct: 3071 KAPDSSPESRRLNAQILSQRIEKAKCLCDEIIKKLNENKTFDDSFKEKEILQIKLNAEEN 3130

Query: 59   -EIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNIQ 108
             ++ K+ Q  +LEL       KN    L   L++  +  S+L   L  N++
Sbjct: 3131 DKLYKVLQNMVLELSPKELDEKNCQDKLETSLHVLNQIKSQLQQPLLINLE 3181


>gi|62988334 cation channel, sperm associated 4 [Homo sapiens]
          Length = 472

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 36  LNEIQDNTE--KELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLNKRLNLSE 93
           L  IQ+N    KE++   + I++E+  I+ NQ +  E+ N    R + SGSL    +   
Sbjct: 381 LEAIQENLRQYKEIRDELNMIVEEVRAIRFNQEQESEVLNR---RSSTSGSLETTSSKDI 437

Query: 94  ERISELGDSLFDNIQSEEAN 113
            ++S+  D L   +  E+ +
Sbjct: 438 RQMSQQQDLLSALVSMEKVH 457


>gi|19923442 transmembrane emp24 protein transport domain containing
           5 [Homo sapiens]
          Length = 229

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 6   ELNEAPGTNPAETEICNIL---DREFKIAVLRKL--NEIQDNTEKELKVLSD--KIIKEI 58
           E  ++ G +  ETE+ + +   D  F     + +    I DN  ++ +   D  K I   
Sbjct: 87  EQRKSDGVHTVETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGT 146

Query: 59  EIIKMNQAEILELKNATDIRKNASGSLNKRLNLSEERISELGDSLFDNI 107
           +I+ M   +ILE  N+   R + SG +   L   E R   + +S FD +
Sbjct: 147 DILDMKLEDILESINSIKSRLSKSGHIQILLRAFEARDRNIQESNFDRV 195


>gi|89353283 serologically defined colon cancer antigen 3 isoform 3
           [Homo sapiens]
          Length = 362

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 6   ELNEAPGTNPAETEICNILDREFKIAVLRK------LNEIQDNTEKELKVLSDKIIK-EI 58
           +LNE    + A+TE+   L+R+ +  ++++      L  +    E+ L++++ + +K E 
Sbjct: 211 KLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAEN 270

Query: 59  EIIKMNQ 65
            ++K+ Q
Sbjct: 271 HVVKLKQ 277


>gi|89353281 serologically defined colon cancer antigen 3 isoform 1
           [Homo sapiens]
          Length = 435

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 6   ELNEAPGTNPAETEICNILDREFKIAVLRK------LNEIQDNTEKELKVLSDKIIK-EI 58
           +LNE    + A+TE+   L+R+ +  ++++      L  +    E+ L++++ + +K E 
Sbjct: 284 KLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAEN 343

Query: 59  EIIKMNQ 65
            ++K+ Q
Sbjct: 344 HVVKLKQ 350


>gi|89353278 serologically defined colon cancer antigen 3 isoform 2
           [Homo sapiens]
          Length = 412

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 6   ELNEAPGTNPAETEICNILDREFKIAVLRK------LNEIQDNTEKELKVLSDKIIK-EI 58
           +LNE    + A+TE+   L+R+ +  ++++      L  +    E+ L++++ + +K E 
Sbjct: 261 KLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAEN 320

Query: 59  EIIKMNQ 65
            ++K+ Q
Sbjct: 321 HVVKLKQ 327


>gi|14917117 keratin 33A [Homo sapiens]
          Length = 404

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 19  EICNILDREFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELK---NAT 75
           ++ N    +++  V     E++     + + L+ +++   E ++  QAEI+EL+   NA 
Sbjct: 223 QVLNETRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNAL 282

Query: 76  DI----RKNASGSLNKRLNLSEERIS---ELGDSLFDNIQSEEA 112
           +I    + N   SL   L  SE R S        L  N++S+ A
Sbjct: 283 EIELQAQHNLRDSLENTLTESEARYSSQLSQVQRLITNVESQLA 326


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.128    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,646,361
Number of Sequences: 37866
Number of extensions: 126396
Number of successful extensions: 456
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 113
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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