Guide to the Human Genome
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Name: SDCCAG3 Sequence: fasta or formatted (362aa) NCBI GI: 89353283
Description:

serologically defined colon cancer antigen 3 isoform 3

Referenced in:

Stomach, Small Intestine, and Colon

Other entries for this name:
alt prot [412aa] serologically defined colon cancer antigen 3 isoform 2
alt prot [435aa] serologically defined colon cancer antigen 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         31           1
 C cysteine            0.6          2           1
 D aspartate           6.4         23           3
 E glutamate          10.5         38           3
 F phenylalanine       3.0         11           2
 G glycine             5.2         19           2
 H histidine           1.9          7           1
 I isoleucine          2.8         10           1
 K lysine              5.0         18           1
 L leucine            10.5         38           2
 M methionine          1.4          5           1
 N asparagine          3.6         13           1
 P proline             5.2         19           2
 Q glutamine           5.5         20           2
 R arginine            5.8         21           2
 S serine             11.3         41           1
 T threonine           4.4         16           1
 V valine              5.5         20           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serologically defined colon cancer antigen 3 isoform... 
SDCCAG3               0.966   serologically defined colon cancer antigen 3 isoform...
SDCCAG3               0.934   serologically defined colon cancer antigen 3 isoform...
GLE1                  0.029   GLE1 RNA export mediator homolog isoform 1 
GLE1                  0.029   GLE1 RNA export mediator homolog isoform 2 
CEP110                0.029   centrosomal protein 110kDa 
CCDC99                0.029   coiled-coil domain containing 99 
KTN1                  0.028   kinectin 1 isoform a 
KTN1                  0.028   kinectin 1 isoform c 
KTN1                  0.028   kinectin 1 isoform a 
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CCDC68                0.026   coiled-coil domain containing 68 
CCDC68                0.026   coiled-coil domain containing 68 
CCDC88A               0.025   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.025   coiled-coil domain containing 88A isoform 1 
EPS15                 0.025   epidermal growth factor receptor pathway substrate 15...
ANKRD26               0.025   ankyrin repeat domain 26 
KRT78                 0.025   keratin 5b 
HOOK1                 0.025   hook homolog 1 
MYH3                  0.023   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CROCC                 0.023   ciliary rootlet coiled-coil 
MYO18A                0.023   myosin 18A isoform b 
RASSF8                0.023   Ras association (RalGDS/AF-6) domain family (N-termi...
NDEL1                 0.023   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.023   nudE nuclear distribution gene E homolog (A. nidulan...
CCDC110               0.023   coiled-coil domain containing 110 isoform b 
CCDC110               0.023   coiled-coil domain containing 110 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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