Guide to the Human Genome
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Name: SDCCAG3 Sequence: fasta or formatted (435aa) NCBI GI: 89353281
Description:

serologically defined colon cancer antigen 3 isoform 1

Referenced in:

Stomach, Small Intestine, and Colon

Other entries for this name:
alt prot [412aa] serologically defined colon cancer antigen 3 isoform 2
alt prot [362aa] serologically defined colon cancer antigen 3 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         36           1
 C cysteine            1.4          6           1
 D aspartate           6.2         27           2
 E glutamate           9.2         40           3
 F phenylalanine       3.9         17           2
 G glycine             6.4         28           2
 H histidine           2.3         10           1
 I isoleucine          2.5         11           1
 K lysine              4.8         21           1
 L leucine             9.7         42           2
 M methionine          1.4          6           1
 N asparagine          3.2         14           1
 P proline             6.2         27           2
 Q glutamine           5.1         22           2
 R arginine            6.0         26           2
 S serine             11.0         48           1
 T threonine           4.1         18           1
 V valine              5.3         23           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serologically defined colon cancer antigen 3 isoform... 
SDCCAG3               0.923   serologically defined colon cancer antigen 3 isoform...
SDCCAG3               0.758   serologically defined colon cancer antigen 3 isoform...
GLE1                  0.024   GLE1 RNA export mediator homolog isoform 1 
GLE1                  0.024   GLE1 RNA export mediator homolog isoform 2 
CEP110                0.024   centrosomal protein 110kDa 
CCDC99                0.024   coiled-coil domain containing 99 
KTN1                  0.023   kinectin 1 isoform a 
KTN1                  0.023   kinectin 1 isoform c 
KTN1                  0.023   kinectin 1 isoform a 
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CCDC68                0.021   coiled-coil domain containing 68 
CCDC68                0.021   coiled-coil domain containing 68 
CCDC88A               0.020   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.020   coiled-coil domain containing 88A isoform 1 
EPS15                 0.020   epidermal growth factor receptor pathway substrate 15...
ANKRD26               0.020   ankyrin repeat domain 26 
KRT78                 0.020   keratin 5b 
HOOK1                 0.020   hook homolog 1 
MYH3                  0.019   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CROCC                 0.019   ciliary rootlet coiled-coil 
MYO18A                0.019   myosin 18A isoform b 
RASSF8                0.019   Ras association (RalGDS/AF-6) domain family (N-termi...
NDEL1                 0.019   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.019   nudE nuclear distribution gene E homolog (A. nidulan...
CCDC110               0.019   coiled-coil domain containing 110 isoform b 
CCDC110               0.019   coiled-coil domain containing 110 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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