Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239748075
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748075 PREDICTED: similar to high-mobility group box 2
[Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165476 PREDICTED: similar to high-mobility group box 2 [Ho... 193 2e-50
gi|239748075 PREDICTED: similar to high-mobility group box 2 [Ho... 193 2e-50
gi|239741972 PREDICTED: similar to high-mobility group box 2 [Ho... 191 8e-50
gi|71143137 high-mobility group box 3 [Homo sapiens] 82 7e-17
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 75 1e-14
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 75 1e-14
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 72 1e-13
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 72 1e-13
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 72 1e-13
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 68 1e-12
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 68 1e-12
gi|194688135 high-mobility group box 2 [Homo sapiens] 68 2e-12
gi|194688133 high-mobility group box 2 [Homo sapiens] 68 2e-12
gi|11321591 high-mobility group box 2 [Homo sapiens] 68 2e-12
gi|4504425 high-mobility group box 1 [Homo sapiens] 66 7e-12
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 64 2e-11
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 64 2e-11
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 64 2e-11
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 64 2e-11
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 61 2e-10
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 37 0.003
gi|239755532 PREDICTED: similar to hCG1990723 [Homo sapiens] 27 4.6
gi|239750002 PREDICTED: hypothetical protein XP_002347250 [Homo ... 27 4.6
gi|239744313 PREDICTED: hypothetical protein XP_002343115 [Homo ... 27 4.6
gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens] 26 6.1
>gi|169165476 PREDICTED: similar to high-mobility group box 2
[Homo sapiens]
Length = 91
Score = 193 bits (491), Expect = 2e-50
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI
Sbjct: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
Query: 61 KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC 91
KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC
Sbjct: 61 KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC 91
>gi|239748075 PREDICTED: similar to high-mobility group box 2
[Homo sapiens]
Length = 91
Score = 193 bits (491), Expect = 2e-50
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI
Sbjct: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
Query: 61 KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC 91
KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC
Sbjct: 61 KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC 91
>gi|239741972 PREDICTED: similar to high-mobility group box 2
[Homo sapiens]
Length = 91
Score = 191 bits (486), Expect = 8e-50
Identities = 90/91 (98%), Positives = 90/91 (98%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI
Sbjct: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
Query: 61 KSQRWVKDADWEMKDYDPAKGHKKKKVRKAC 91
KSQRWVKDADWEMKDYDPAKGHKKKKV KAC
Sbjct: 61 KSQRWVKDADWEMKDYDPAKGHKKKKVHKAC 91
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 82.4 bits (202), Expect = 7e-17
Identities = 48/88 (54%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
MAKGD + PKGKMSA FFV+TCREEHKK P+ PV+F K R + GKEK
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 60 IKSQRWVK-DADWEMKDYDPAKGHKKKK 86
+ + K D EMKDY PAKG KKKK
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKKK 88
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 74.7 bits (182), Expect = 1e-14
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
MAKGD + PKGKMSA FFV+TCREEHKK P P++F K R + KEK
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 60 IKSQRWVK-DADWEMKDYDPAKGHKKK 85
+ + K D E+KDY PAKG KKK
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKGGKKK 87
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 74.7 bits (182), Expect = 1e-14
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
MAKGD + PKGKMSA FFV+TCREEHKK P P++F K R + KEK
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 60 IKSQRWVK-DADWEMKDYDPAKGHKKK 85
+ + K D E+KDY PAKG KKK
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKGGKKK 87
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 72.0 bits (175), Expect = 1e-13
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQF-GKEKINL 59
MA+GD + PKGKMSA FF +TCREEHKK P+ PV+F+ K + GKEK
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 60 IKSQRWVK-DADWEMKDYDPAKGHKKK 85
+ + K D EMKD P +G KKK
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEGGKKK 87
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 72.0 bits (175), Expect = 1e-13
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQF-GKEKINL 59
MA+GD + PKGKMSA FF +TCREEHKK P+ PV+F+ K + GKEK
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 60 IKSQRWVK-DADWEMKDYDPAKGHKKK 85
+ + K D EMKD P +G KKK
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEGGKKK 87
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 72.0 bits (175), Expect = 1e-13
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQF-GKEKINL 59
MA+GD + PKGKMSA FF +TCREEHKK P+ PV+F+ K + GKEK
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 60 IKSQRWVK-DADWEMKDYDPAKGHKKK 85
+ + K D EMKD P +G KKK
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEGGKKK 87
>gi|113421073 PREDICTED: similar to high mobility group box 3
[Homo sapiens]
Length = 208
Score = 68.2 bits (165), Expect = 1e-12
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
MAKGD + P+GKMSA F V+TC +EHKK P+ PV+F K R + KEK
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 60 IKSQRWVKDA-DWEMKDYDPAKGHKKK 85
+ + + D EMKDY PAKG KKK
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKGGKKK 87
>gi|113420668 PREDICTED: similar to high mobility group box 3
[Homo sapiens]
Length = 208
Score = 68.2 bits (165), Expect = 1e-12
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
MAKGD + P+GKMSA F V+TC +EHKK P+ PV+F K R + KEK
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 60 IKSQRWVKDA-DWEMKDYDPAKGHKKK 85
+ + + D EMKDY PAKG KKK
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKGGKKK 87
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 67.8 bits (164), Expect = 2e-12
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKI-- 57
M KGD P+GKMS+ FFV+TCREEHKK PD V+F K R + KEK
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 58 -NLIKSQRWVKDADWEMKDYDPAKGHKKKK 86
++ KS + D EMK+Y P KG KK K
Sbjct: 61 EDMAKSDK--ARYDREMKNYVPPKGDKKGK 88
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 67.8 bits (164), Expect = 2e-12
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKI-- 57
M KGD P+GKMS+ FFV+TCREEHKK PD V+F K R + KEK
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 58 -NLIKSQRWVKDADWEMKDYDPAKGHKKKK 86
++ KS + D EMK+Y P KG KK K
Sbjct: 61 EDMAKSDK--ARYDREMKNYVPPKGDKKGK 88
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 67.8 bits (164), Expect = 2e-12
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKI-- 57
M KGD P+GKMS+ FFV+TCREEHKK PD V+F K R + KEK
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 58 -NLIKSQRWVKDADWEMKDYDPAKGHKKKK 86
++ KS + D EMK+Y P KG KK K
Sbjct: 61 EDMAKSDK--ARYDREMKNYVPPKGDKKGK 88
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 65.9 bits (159), Expect = 7e-12
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
M KGD + P+GKMS+ FFV+TCREEHKK PD V+F K R + KEK
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 60 IKSQRWVKDA-DWEMKDYDPAKGHKKKKVR 88
+ K + EMK Y P KG KKK +
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFK 90
>gi|169184027 PREDICTED: similar to high mobility group box 3
[Homo sapiens]
Length = 208
Score = 64.3 bits (155), Expect = 2e-11
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINL 59
MAKGD + P+GKMSA F V+TC +EHKK P+ V+F K R + KEK
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 60 IKSQRWVKDA-DWEMKDYDPAKGHKKK 85
+ + + D EMKDY PAKG KKK
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKGGKKK 87
>gi|169168462 PREDICTED: similar to high mobility group box 3
[Homo sapiens]
Length = 204
Score = 64.3 bits (155), Expect = 2e-11
Identities = 44/87 (50%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
MAKGD + PKGKMSA VFFV+TCREE KK P F + K R + GKEK
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSK--KCSERWKTMSGKEKSKFD 58
Query: 61 KSQRWVK-DADWEMKDYDPAKGHKKKK 86
+ + K D EMK PAKG KKKK
Sbjct: 59 EMAKTDKVHCDREMK--GPAKGGKKKK 83
>gi|169168166 PREDICTED: similar to high mobility group box 3
[Homo sapiens]
Length = 204
Score = 64.3 bits (155), Expect = 2e-11
Identities = 44/87 (50%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
MAKGD + PKGKMSA VFFV+TCREE KK P F + K R + GKEK
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSK--KCSERWKTMSGKEKSKFD 58
Query: 61 KSQRWVK-DADWEMKDYDPAKGHKKKK 86
+ + K D EMK PAKG KKKK
Sbjct: 59 EMAKTDKVHCDREMK--GPAKGGKKKK 83
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 64.3 bits (155), Expect = 2e-11
Identities = 44/87 (50%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLI 60
MAKGD + PKGKMSA VFFV+TCREE KK P F + K R + GKEK
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNPVNFAEFSK--KCSERWKTMSGKEKSKFD 58
Query: 61 KSQRWVK-DADWEMKDYDPAKGHKKKK 86
+ + K D EMK PAKG KKKK
Sbjct: 59 EMAKTDKVHCDREMK--GPAKGGKKKK 83
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 60.8 bits (146), Expect = 2e-10
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 1 MAKGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIF-KSYLRGERQFGKEK--- 56
M KGD + P+GKMS+ FFV+TCREEHKK D V+F K R + KEK
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKF 60
Query: 57 INLIKSQRWVKDADWEMKDYDPAKGHKKKKVR 88
++ K+ + + +MK Y P KG KKK +
Sbjct: 61 EDMAKADK--THYERQMKTYIPPKGETKKKFK 90
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 37.4 bits (85), Expect = 0.003
Identities = 30/77 (38%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 14 SANVFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQ-FGKEKINLIKSQRWVK-DADW 71
S N V C EEHKK PD V F K + F KEK + K +
Sbjct: 689 SHNNTLVDPC-EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYER 747
Query: 72 EMKDYDPAKGHKKKKVR 88
EMK Y P KG KKKK +
Sbjct: 748 EMKTYIPPKGEKKKKFK 764
>gi|239755532 PREDICTED: similar to hCG1990723 [Homo sapiens]
Length = 225
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 17 VFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLIKSQRWVKDADWEMKDY 76
V V+ E+H K S++ + + +G R + + K+ +K + +K + ++KDY
Sbjct: 146 VALVRKLEEKHPKASAQRNKSYMPVGRQRGKGRRYWSRRKLPWVKVKN-LKRMEGKVKDY 204
Query: 77 D 77
+
Sbjct: 205 E 205
>gi|239750002 PREDICTED: hypothetical protein XP_002347250 [Homo
sapiens]
Length = 505
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 17 VFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLIKSQRWVKDADWEMKDY 76
V V+ E+H K S++ + + +G R + + K+ +K + +K + ++KDY
Sbjct: 426 VALVRKLEEKHPKASAQRNKSYMPVGRQRGKGRRYWSRRKLPWVKVKN-LKRMEGKVKDY 484
Query: 77 D 77
+
Sbjct: 485 E 485
>gi|239744313 PREDICTED: hypothetical protein XP_002343115 [Homo
sapiens]
Length = 456
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 17 VFFVKTCREEHKKLKPDGPVSFLRIFKSYLRGERQFGKEKINLIKSQRWVKDADWEMKDY 76
V V+ E+H K S++ + + +G R + + K+ +K + +K + ++KDY
Sbjct: 377 VALVRKLEEKHPKASAQRNKSYMPVGRQRGKGRRYWSRRKLPWVKVKN-LKRMEGKVKDY 435
Query: 77 D 77
+
Sbjct: 436 E 436
>gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]
Length = 2419
Score = 26.2 bits (56), Expect = 6.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 63 QRWVKDADWEMKDYDPAKG 81
QRW++D +W++ D KG
Sbjct: 700 QRWLEDVEWQVTSEDYGKG 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,000
Number of Sequences: 37866
Number of extensions: 148753
Number of successful extensions: 389
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 25
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.