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Search of human proteins with 239748061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo
sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo ... 380 e-106
gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo ... 305 1e-83
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 37 0.012
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|46243671 G protein-coupled receptor 152 [Homo sapiens] 36 0.021
gi|124378039 SEC16 homolog A [Homo sapiens] 35 0.027
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.027
gi|160333411 early B-cell factor 4 [Homo sapiens] 35 0.027
gi|21328446 hormone-sensitive lipase [Homo sapiens] 35 0.036
gi|91208420 bassoon protein [Homo sapiens] 35 0.036
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 35 0.036
gi|169171337 PREDICTED: similar to Six transmembrane epithelial ... 35 0.046
gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo sap... 35 0.046
gi|56549696 E1A binding protein p400 [Homo sapiens] 35 0.046
gi|23510413 sorting nexin 26 [Homo sapiens] 35 0.046
gi|239749181 PREDICTED: hypothetical protein XP_002346944 [Homo ... 34 0.061
gi|191252782 p21-activated kinase 6 [Homo sapiens] 34 0.061
gi|191252780 p21-activated kinase 6 [Homo sapiens] 34 0.061
gi|9910476 p21-activated kinase 6 [Homo sapiens] 34 0.061
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 34 0.079
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 34 0.079
gi|123701326 zinc finger protein 831 [Homo sapiens] 34 0.079
gi|8922301 WD repeat domain 70 [Homo sapiens] 34 0.079
gi|239742226 PREDICTED: hypothetical protein [Homo sapiens] 33 0.10
gi|81295809 pericentrin [Homo sapiens] 33 0.10
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 33 0.10
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 33 0.10
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 33 0.10
>gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo
sapiens]
Length = 182
Score = 380 bits (976), Expect = e-106
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MGEKETRSISIACNVCFGNTYNVLVLCQRYTTVFNTTSVPAVKKLTVTRTHVSQLPPTGP 60
MGEKETRSISIACNVCFGNTYNVLVLCQRYTTVFNTTSVPAVKKLTVTRTHVSQLPPTGP
Sbjct: 1 MGEKETRSISIACNVCFGNTYNVLVLCQRYTTVFNTTSVPAVKKLTVTRTHVSQLPPTGP 60
Query: 61 GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP 120
GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP
Sbjct: 61 GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP 120
Query: 121 AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC 180
AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC
Sbjct: 121 AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC 180
Query: 181 WF 182
WF
Sbjct: 181 WF 182
>gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo
sapiens]
Length = 152
Score = 305 bits (782), Expect = 1e-83
Identities = 152/182 (83%), Positives = 152/182 (83%), Gaps = 30/182 (16%)
Query: 1 MGEKETRSISIACNVCFGNTYNVLVLCQRYTTVFNTTSVPAVKKLTVTRTHVSQLPPTGP 60
MGEKETRSISIACNVCFG RTHVSQLPPTGP
Sbjct: 1 MGEKETRSISIACNVCFG------------------------------RTHVSQLPPTGP 30
Query: 61 GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP 120
GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP
Sbjct: 31 GNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLP 90
Query: 121 AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC 180
AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC
Sbjct: 91 AASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHALEAVCC 150
Query: 181 WF 182
WF
Sbjct: 151 WF 152
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 36.6 bits (83), Expect = 0.012
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 80 EIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPF---SSHTPLASC 136
E L+ S P A P + QA TP P SA P P+A+ P ++HT +AS
Sbjct: 292 EEALRRSSTPIEHA---PVCTSQATTPLLPASAQPPAAASPSAASPPLATAAAHTAIAS- 347
Query: 137 GQVTPPEAAPGNG--SQATSHGGSALAAGSP 165
T P ++P + QA+S+ + A+ +P
Sbjct: 348 ASTTAPASSPADSPRPQASSYSPAVAASSAP 378
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.6 bits (83), Expect = 0.012
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 74 QDGLRHEIRLKSGSAPASTARGRP-PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP 132
Q GL L+ G + G P P+A P P RR S + +
Sbjct: 189 QPGLPTHAALRGGGGGSEGGGGGARPSPPRARQP--PSGRPRPRRTRLLGSAERHTGRAA 246
Query: 133 LASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEH 173
LA GQ++ P AA N S+ S AA PTR + H
Sbjct: 247 LARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.6 bits (83), Expect = 0.012
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 74 QDGLRHEIRLKSGSAPASTARGRP-PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP 132
Q GL L+ G + G P P+A P P RR S + +
Sbjct: 189 QPGLPTHAALRGGGGGSEGGGGGARPSPPRARQP--PSGRPRPRRTRLLGSAERHTGRAA 246
Query: 133 LASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEH 173
LA GQ++ P AA N S+ S AA PTR + H
Sbjct: 247 LARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.6 bits (83), Expect = 0.012
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 74 QDGLRHEIRLKSGSAPASTARGRP-PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTP 132
Q GL L+ G + G P P+A P P RR S + +
Sbjct: 189 QPGLPTHAALRGGGGGSEGGGGGARPSPPRARQP--PSGRPRPRRTRLLGSAERHTGRAA 246
Query: 133 LASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEH 173
LA GQ++ P AA N S+ S AA PTR + H
Sbjct: 247 LARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGH 287
>gi|46243671 G protein-coupled receptor 152 [Homo sapiens]
Length = 470
Score = 35.8 bits (81), Expect = 0.021
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 98 PLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQV---TPPEAAPGNG 149
P + +P + S P+ P A EDP TP AS G+ TPPEAAPG G
Sbjct: 417 PAASSVPSPCDEASPTPSSHPTPGALEDPA---TPPASEGESPSSTPPEAAPGAG 468
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 35.4 bits (80), Expect = 0.027
Identities = 38/128 (29%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 52 VSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQ------AET 105
V PP PG P V + R G R R P+ T R P L+P A
Sbjct: 2164 VQAAPPALPGPPGAPVNMYSRRAAGTR--ARYVDVLNPSGTQRSEPALAPADFVAPLAPL 2221
Query: 106 PEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTP-PEAAPGNGSQATSHGGSALAAGS 164
P + VP D P A+ G P P P S A S GS L +
Sbjct: 2222 PIPSNLFVPTPDAEEPQLPDGTGREGPAAARGLANPEPAPEPKVLSSAASLPGSELPSSR 2281
Query: 165 PTRSWGKE 172
P S G E
Sbjct: 2282 PEGSQGGE 2289
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.4 bits (80), Expect = 0.027
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 87 SAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAP 146
+AP + A PP +P P P +A P PA P + PP AA
Sbjct: 247 AAPPAPAAPSPPAAP---APAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAA 303
Query: 147 GNGSQATSHGGSALAAGSP 165
NG A + A AAG P
Sbjct: 304 QNGGSAGAAPAPAPAAGGP 322
Score = 30.4 bits (67), Expect = 0.88
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 85 SGSAPASTARGRPPLSPQAET----------PEEPHSAVPNRRQLPAASEDPFSSHTPLA 134
+G+ PA+ A G P +P+ P+ P P R +PA P + P
Sbjct: 71 AGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP-- 128
Query: 135 SCGQVTPPEAAPGNGSQATSHGGSALAAG 163
PPE + GS A +A+AAG
Sbjct: 129 ------PPEGSA--GSCAPVPAAAAVAAG 149
>gi|160333411 early B-cell factor 4 [Homo sapiens]
Length = 598
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 76 GLRHEIRLKSGSAPA----STARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHT 131
G E+ LK + A ST R PL+P A P PH AV + T
Sbjct: 384 GSNQELLLKRAADVAEALYSTPRAPGPLAPLA--PSHPHPAVVGINAFSSPLAIAVGDAT 441
Query: 132 P------LASCGQVTPPEAAPGNGSQATSHGGSALAAG 163
P SC +P AP GSQ + +GG L AG
Sbjct: 442 PGPEPGYARSCSSASPRGFAPSPGSQQSGYGG-GLGAG 478
>gi|21328446 hormone-sensitive lipase [Homo sapiens]
Length = 1076
Score = 35.0 bits (79), Expect = 0.036
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 40 PAVKKLTVTRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPL 99
P ++++ +T+ + GPG +E + +++ LR + G P G PP
Sbjct: 99 PYIQRVLLTQQEAAS--QQGPGLGKESIT---QQEPALRQRHVAQPGPGP-----GEPPP 148
Query: 100 SPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHG 156
+ Q A P ++ P+A + S TP S Q TP + A T G
Sbjct: 149 AQQEAESTPAAQAKPGAKREPSAPTESTSQETPEQSDKQTTPVQGAKSKQGSLTELG 205
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.0 bits (79), Expect = 0.036
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 85 SGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEA 144
+ AP + RP + P EEP PAA ++ + P GQ P +A
Sbjct: 2287 AAKAPGAGGPSRPEM-PVGAAREEPLPTTT-----PAAIKEAAGAPAPAPLAGQKPPADA 2340
Query: 145 APGNGSQATSHGG 157
APG GS A S G
Sbjct: 2341 APGGGSGALSRPG 2353
Score = 30.8 bits (68), Expect = 0.67
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 68 KAWEREQDGLRHEIRLKSGSAPASTA----RGRPPLSPQAETPEEPHSAVPNRRQLPAAS 123
K +ERE++ + E K+G P+S + R RPP+ QA E P S P R PA
Sbjct: 3464 KGYEREREAV--ERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESPVS--PLGRPRPAGG 3519
Query: 124 EDPFSSHTPLASCGQVTPPE 143
P T C + P+
Sbjct: 3520 PLPPGGDTCPQFCSSHSMPD 3539
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 35.0 bits (79), Expect = 0.036
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 74 QDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDP---FSSH 130
++GL+ R + A A +A G P SP+ EP P RR+ E+ ++
Sbjct: 83 EEGLQ---RPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAAR 139
Query: 131 TPLASCGQVTPPEA--APGNGSQATSHGG------SALAAGSPTRSWGKEHALEAVCCW 181
A+C + ++ APG G + G +A AAG+ R+ + CCW
Sbjct: 140 AADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCW 198
>gi|169171337 PREDICTED: similar to Six transmembrane epithelial
antigen of prostate [Homo sapiens]
Length = 450
Score = 34.7 bits (78), Expect = 0.046
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 101 PQAETPEEPHS------AVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATS 154
P+A +P P S A N + +P +P P G+ T EA P G +A+
Sbjct: 53 PEASSPRAPLSHSQQEEAAMNMKDVP----EPCGRGAPAGGAGRATDKEAGPAAGLEASR 108
Query: 155 HGGSALAAG 163
GGS A G
Sbjct: 109 SGGSGAAWG 117
>gi|169170942 PREDICTED: hypothetical protein LOC256227 [Homo
sapiens]
Length = 450
Score = 34.7 bits (78), Expect = 0.046
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 101 PQAETPEEPHS------AVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATS 154
P+A +P P S A N + +P +P P G+ T EA P G +A+
Sbjct: 53 PEASSPRAPLSHSQQEEAAMNMKDVP----EPCGRGAPAGGAGRATDKEAGPAAGLEASR 108
Query: 155 HGGSALAAG 163
GGS A G
Sbjct: 109 SGGSGAAWG 117
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 34.7 bits (78), Expect = 0.046
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 79 HEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASED--PFSSHTPLASC 136
H +L++ + ++ G+PP PQA + SA+P R LP+ ++ P +A
Sbjct: 1513 HPAKLRAQTTAQASTPGQPPPQPQAPSHAAGQSALPQRLVLPSQAQARLPSGEVVKIAQL 1572
Query: 137 GQVTPPEA 144
+T P++
Sbjct: 1573 ASITGPQS 1580
Score = 32.7 bits (73), Expect = 0.18
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 85 SGSAPASTARGRPPLSPQAETPEEPHSAVP----------NRRQLPAASEDPFSSHTPLA 134
+ +AP RGRPP++ + PE +A P R Q +AS S P
Sbjct: 1457 ASAAPQGPLRGRPPIATFSANPEAKAAAAPFQTSQASASAPRHQPASASSTAASPAHPAK 1516
Query: 135 SCGQVTPPEAAPGN---GSQATSH--GGSAL 160
Q T + PG QA SH G SAL
Sbjct: 1517 LRAQTTAQASTPGQPPPQPQAPSHAAGQSAL 1547
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 34.7 bits (78), Expect = 0.046
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 86 GSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE-- 143
G +PAS++ PP P++ + +P VP +LP P+ TP G PPE
Sbjct: 1017 GPSPASSSSSSPPAHPRSRS--DPGPPVP---RLPQKQRAPWGPRTPHRVPGPWGPPEPL 1071
Query: 144 -----AAPGNGSQATSHGGSALAAGS------------PTRSW 169
A P G H GS G PT SW
Sbjct: 1072 LLYRAAPPAYGRGGELHRGSLYRNGGQRGEGAGPPPPYPTPSW 1114
>gi|239749181 PREDICTED: hypothetical protein XP_002346944 [Homo
sapiens]
Length = 317
Score = 34.3 bits (77), Expect = 0.061
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 101 PQAETPEEPHS------AVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATS 154
P+A +P P S A N + +P +P P G+ T EA P G +A
Sbjct: 53 PEASSPRAPPSHSQQEEAAMNMKDVP----EPCGRGAPAGGAGRATDKEAGPAAGLEAPR 108
Query: 155 HGGSALAAG 163
GGS A G
Sbjct: 109 SGGSGAAWG 117
>gi|191252782 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 34.3 bits (77), Expect = 0.061
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 57 PTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAE--------TPEE 108
P G G+P + + ++ R + +AP S+++ PP PQ++ +
Sbjct: 241 PGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKPGPP--PQSKPNSSFRPPQKDN 298
Query: 109 PHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEA---APGNGSQATSHGGSALAAGSP 165
P S V + LP S+ P + +PL + +P ++ AP G G + AGSP
Sbjct: 299 PPSLVAKAQSLP--SDQPVGTFSPLTTSDTSSPQKSLRTAPATGQLP----GRSSPAGSP 352
Query: 166 TRSW 169
R+W
Sbjct: 353 -RTW 355
>gi|191252780 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 34.3 bits (77), Expect = 0.061
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 57 PTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAE--------TPEE 108
P G G+P + + ++ R + +AP S+++ PP PQ++ +
Sbjct: 241 PGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKPGPP--PQSKPNSSFRPPQKDN 298
Query: 109 PHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEA---APGNGSQATSHGGSALAAGSP 165
P S V + LP S+ P + +PL + +P ++ AP G G + AGSP
Sbjct: 299 PPSLVAKAQSLP--SDQPVGTFSPLTTSDTSSPQKSLRTAPATGQLP----GRSSPAGSP 352
Query: 166 TRSW 169
R+W
Sbjct: 353 -RTW 355
>gi|9910476 p21-activated kinase 6 [Homo sapiens]
Length = 681
Score = 34.3 bits (77), Expect = 0.061
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 57 PTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAE--------TPEE 108
P G G+P + + ++ R + +AP S+++ PP PQ++ +
Sbjct: 241 PGGEGSPSPKTRESSLKRRLFRSMFLSTAATAPPSSSKPGPP--PQSKPNSSFRPPQKDN 298
Query: 109 PHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEA---APGNGSQATSHGGSALAAGSP 165
P S V + LP S+ P + +PL + +P ++ AP G G + AGSP
Sbjct: 299 PPSLVAKAQSLP--SDQPVGTFSPLTTSDTSSPQKSLRTAPATGQLP----GRSSPAGSP 352
Query: 166 TRSW 169
R+W
Sbjct: 353 -RTW 355
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 33.9 bits (76), Expect = 0.079
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 86 GSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAA---SEDPFSSHTPLASCGQVTPP 142
G +P S PPL+ E P P SA NRR +P + S D H ++ P
Sbjct: 1668 GPSPVSGGECSPPLT--VEPPVRPLSATLNRRDMPRSEFGSVDGPLPHPRWSAEASGKPS 1725
Query: 143 EAAPGNGSQATSHGGSALAAGSPTR 167
+ PG+G+ + S SPTR
Sbjct: 1726 PSDPGSGTATMMNSSS--RGSSPTR 1748
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 96 RPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPE-AAPGNGSQATS 154
RPPL + P P P RR LP H P G + P E PG +
Sbjct: 1809 RPPLGLREFAPGVP----PGRRDLPLHPRGFLPGHAPFRPLGSLGPREYFIPGTRLPPPT 1864
Query: 155 HG 156
HG
Sbjct: 1865 HG 1866
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 33.9 bits (76), Expect = 0.079
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 40 PAVKKLTVTRTHVSQLPPTGPGNPR--ERVKAWEREQDGLRHEIRLKSGSAPASTARGRP 97
P +K+L+ +RTH + R +RV ++++++ R ++S +P S G
Sbjct: 1014 PRIKQLSFSRTHSASFYSVSQPKSRSVQRVHSFQQDKSDQRENSPVQSIRSPKSLLFGA- 1072
Query: 98 PLSPQAETPEEPHSAVPNRR-------QLPAASEDPFSSHTPLASCGQVTP 141
+ +P E SA +R ++PAA + P SH S + TP
Sbjct: 1073 --MSEMISPSEKGSARMKKRSRNTLDSEVPAAYQTPKKSHQKSLSFSKTTP 1121
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 33.9 bits (76), Expect = 0.079
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 44 KLTVTRTHVSQLPPTGPGNPRERVKA---------WEREQDGLRHEI-RLKSGSAPASTA 93
++ +R +LP + PG PRE + ++ +G H I RL GS A
Sbjct: 1029 RMATSRPAARELPISAPGAPREATSSPPTPTCEAHLVQDMEGDSHRIHRLCMGSTLARAR 1088
Query: 94 RGRPPLSPQA---ETPEEPHSAVPNRRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGS 150
L+P E E P +A + P DP S P + +T P+ P
Sbjct: 1089 LSGDVLNPWVPNWELGEPPGNAPEDPSSGPLVGPDPCSPLQPGSFLTALTRPQGVPPGWP 1148
Query: 151 QATSHGGSALAAGSPTRS 168
+ S + TRS
Sbjct: 1149 ELALSSHSGTSRSHSTRS 1166
>gi|8922301 WD repeat domain 70 [Homo sapiens]
Length = 654
Score = 33.9 bits (76), Expect = 0.079
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 116 RRQLPAASEDPFSSHTPLASCGQVTPPEAAPGNGSQATSHGGS 158
R+QL DP SH P PP A PG G + +HGG+
Sbjct: 548 RKQLEKDRLDPLKSHKP-------EPPVAGPGRGGRVGTHGGT 583
>gi|239742226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.10
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 60 PGNPRERVKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVP 114
PG+P R W L+ E +L +GS PA + PP T + H +P
Sbjct: 244 PGSPGARPSNWNISSPALKPEHQLPAGSPPAQPSTSAPPRVLSCTTLKLEHQLLP 298
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 33.5 bits (75), Expect = 0.10
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 67 VKAWEREQDGLRHEIRLKSGSAPASTARGRPPLSPQAETPEEPHSAVPNRRQLPAASEDP 126
VK W+ + + L G AP R R P SP P R+ P + P
Sbjct: 3213 VKKWQE----VDRKGALAQGKAPRPGPRARQPQSP------------PRTRESPPTRDVP 3256
Query: 127 FSSHTPLASCGQVTPPEAAPGNGSQATSHGGSALAAGSPTRSWGKEHAL 175
S HT + G+ A+P +G +AT S L S T S EH+L
Sbjct: 3257 -SGHTRDPARGRRLAAAASPHSGGRATPSPNSRLER-SLTASQDPEHSL 3303
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 33.5 bits (75), Expect = 0.10
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 35/144 (24%)
Query: 35 NTTSVPAVKKLTVTRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTAR 94
N PA+K L+ TH PP+ P ++L S P ++
Sbjct: 408 NLPPPPALKPLSSLSTHH---PPSAHPPP-----------------LQLMPQSQPLPSSP 447
Query: 95 GRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSH----------TPLASCGQVTPPEA 144
+PP Q++ P ++ P A + PF+ H TP +C + P A
Sbjct: 448 AQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP-PTCPSTSTPPA 506
Query: 145 APGNGSQATSHG----GSALAAGS 164
PG +Q G G ++A GS
Sbjct: 507 GPGTSAQPPCSGAAASGGSIAGGS 530
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.5 bits (75), Expect = 0.10
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 35/144 (24%)
Query: 35 NTTSVPAVKKLTVTRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTAR 94
N PA+K L+ TH PP+ P ++L S P ++
Sbjct: 962 NLPPPPALKPLSSLSTHH---PPSAHPPP-----------------LQLMPQSQPLPSSP 1001
Query: 95 GRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSH----------TPLASCGQVTPPEA 144
+PP Q++ P ++ P A + PF+ H TP +C + P A
Sbjct: 1002 AQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP-PTCPSTSTPPA 1060
Query: 145 APGNGSQATSHG----GSALAAGS 164
PG +Q G G ++A GS
Sbjct: 1061 GPGTSAQPPCSGAAASGGSIAGGS 1084
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.5 bits (75), Expect = 0.10
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 35/144 (24%)
Query: 35 NTTSVPAVKKLTVTRTHVSQLPPTGPGNPRERVKAWEREQDGLRHEIRLKSGSAPASTAR 94
N PA+K L+ TH PP+ P ++L S P ++
Sbjct: 962 NLPPPPALKPLSSLSTHH---PPSAHPPP-----------------LQLMPQSQPLPSSP 1001
Query: 95 GRPPLSPQAETPEEPHSAVPNRRQLPAASEDPFSSH----------TPLASCGQVTPPEA 144
+PP Q++ P ++ P A + PF+ H TP +C + P A
Sbjct: 1002 AQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP-PTCPSTSTPPA 1060
Query: 145 APGNGSQATSHG----GSALAAGS 164
PG +Q G G ++A GS
Sbjct: 1061 GPGTSAQPPCSGAAASGGSIAGGS 1084
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,235,892
Number of Sequences: 37866
Number of extensions: 506487
Number of successful extensions: 3178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 2821
Number of HSP's gapped (non-prelim): 729
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.