Guide to the Human Genome
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Name: MGC87042 Sequence: fasta or formatted (450aa) NCBI GI: 169170942
Description:

PREDICTED: hypothetical protein LOC256227

Not currently referenced in the text

Other entries for this name:
alt mRNA {450aa} PREDICTED: similar to Six transmembrane epithelial antigen of pro...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         45           5
 C cysteine            0.9          4           1
 D aspartate           2.9         13           1
 E glutamate           6.4         29           2
 F phenylalanine       3.1         14           2
 G glycine             7.1         32           2
 H histidine           4.7         21           2
 I isoleucine          4.4         20           1
 K lysine              5.1         23           2
 L leucine            10.9         49           2
 M methionine          2.4         11           1
 N asparagine          2.0          9           1
 P proline             5.3         24           1
 Q glutamine           5.1         23           2
 R arginine            4.9         22           2
 S serine              8.4         38           2
 T threonine           5.3         24           1
 V valine              4.4         20           1
 W tryptophan          2.9         13           1
 Y tyrosine            3.6         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC256227 
MGC87042              1.000   PREDICTED: similar to Six transmembrane epithelial ...
STEAP1                0.531   six transmembrane epithelial antigen of the prostate ...
LOC100290317          0.352   PREDICTED: hypothetical protein XP_002346944 
STEAP2                0.224   six transmembrane epithelial antigen of the prostat...
STEAP2                0.224   six transmembrane epithelial antigen of the prostat...
STEAP2                0.224   six transmembrane epithelial antigen of the prostat...
STEAP3                0.202   dudulin 2 isoform b 
STEAP3                0.202   dudulin 2 isoform a 
STEAP3                0.202   dudulin 2 isoform b 
STEAP4                0.177   tumor necrosis factor, alpha-induced protein 9 [Hom...
FLJ34208              0.012   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.012   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.012   PREDICTED: hypothetical protein LOC401106 
LOC100290859          0.011   PREDICTED: hypothetical protein XP_002346523 
LOC100288572          0.011   PREDICTED: hypothetical protein XP_002342361 
TERF2                 0.011   telomeric repeat binding factor 2 
LRFN2                 0.010   leucine rich repeat and fibronectin type III domain ...
LTK                   0.010   leukocyte receptor tyrosine kinase isoform 1 precurs...
FOXD2                 0.010   forkhead box D2 
MAGI2                 0.010   membrane associated guanylate kinase, WW and PDZ dom...
LOC100130128          0.009   PREDICTED: hypothetical protein 
LOC100130128          0.009   PREDICTED: hypothetical protein 
PRR12                 0.009   proline rich 12 
DACT3                 0.009   thymus expressed gene 3-like 
MYOZ3                 0.008   myozenin 3 
MYOZ3                 0.008   myozenin 3 
ASXL1                 0.008   additional sex combs like 1 
TACC2                 0.008   transforming, acidic coiled-coil containing protein...
MXRA7                 0.008   transmembrane anchor protein 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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