Guide to the Human Genome
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Name: LOC100290317 Sequence: fasta or formatted (317aa) NCBI GI: 239749181
Description:

PREDICTED: hypothetical protein XP_002346944

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         33           5
 C cysteine            1.3          4           1
 D aspartate           3.2         10           2
 E glutamate           6.3         20           2
 F phenylalanine       3.2         10           1
 G glycine             6.9         22           2
 H histidine           3.5         11           1
 I isoleucine          7.3         23           1
 K lysine              7.3         23           2
 L leucine             9.1         29           3
 M methionine          2.2          7           1
 N asparagine          2.2          7           1
 P proline             6.0         19           2
 Q glutamine           3.5         11           2
 R arginine            4.4         14           2
 S serine              7.9         25           2
 T threonine           4.4         14           1
 V valine              4.7         15           2
 W tryptophan          4.4         14           1
 Y tyrosine            1.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346944 
MGC87042              0.501   PREDICTED: similar to Six transmembrane epithelial ...
MGC87042              0.501   PREDICTED: hypothetical protein LOC256227 
STEAP1                0.415   six transmembrane epithelial antigen of the prostate ...
STEAP2                0.197   six transmembrane epithelial antigen of the prostat...
STEAP2                0.197   six transmembrane epithelial antigen of the prostat...
STEAP3                0.192   dudulin 2 isoform b 
STEAP3                0.192   dudulin 2 isoform a 
STEAP3                0.192   dudulin 2 isoform b 
STEAP2                0.152   six transmembrane epithelial antigen of the prostat...
STEAP4                0.141   tumor necrosis factor, alpha-induced protein 9 [Hom...
LTK                   0.022   leukocyte receptor tyrosine kinase isoform 1 precurs...
LOC100293254          0.017   PREDICTED: hypothetical protein 
LOC100289377          0.017   PREDICTED: hypothetical protein 
LOC100289377          0.017   PREDICTED: hypothetical protein XP_002343119 
MGEA5                 0.016   meningioma expressed antigen 5 (hyaluronidase) isof...
MGEA5                 0.016   meningioma expressed antigen 5 (hyaluronidase) isofo...
SOX12                 0.016   SRY (sex determining region Y)-box 12 
RUSC1                 0.014   RUN and SH3 domain containing 1 isoform b 
RUSC1                 0.014   RUN and SH3 domain containing 1 isoform a 
OBSCN                 0.014   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100290859          0.014   PREDICTED: hypothetical protein XP_002346523 
LOC100288572          0.014   PREDICTED: hypothetical protein XP_002342361 
CLIC6                 0.014   chloride intracellular channel 6 
LOC100292655          0.014   PREDICTED: similar to armadillo repeat containing, ...
TNRC18                0.014   trinucleotide repeat containing 18 
OSBP                  0.014   oxysterol binding protein 
BSN                   0.013   bassoon protein 
BCL9L                 0.013   B-cell CLL/lymphoma 9-like 
EIF3B                 0.013   eukaryotic translation initiation factor 3, subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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