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Search of human proteins with 239748026
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748026 PREDICTED: hypothetical protein [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753463 PREDICTED: hypothetical protein XP_002345663 [Homo ... 239 5e-64
gi|239748026 PREDICTED: hypothetical protein [Homo sapiens] 239 5e-64
gi|239741922 PREDICTED: hypothetical protein XP_002344247 [Homo ... 239 5e-64
gi|239754597 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo ... 36 0.008
gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo ... 36 0.008
gi|239508884 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|21729876 ATP-binding cassette, sub-family C, member 11 isofor... 32 0.11
gi|21729873 ATP-binding cassette, sub-family C, member 11 isofor... 32 0.11
gi|15149474 ATP-binding cassette, sub-family C, member 11 isofor... 32 0.11
gi|169211037 PREDICTED: similar to mitogen-activated protein kin... 32 0.11
gi|239740950 PREDICTED: similar to mitogen-activated protein kin... 32 0.11
gi|4885433 mitogen-activated protein kinase 8 interacting protei... 32 0.11
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|71999153 hypothetical protein LOC23334 [Homo sapiens] 31 0.19
gi|13128864 histone deacetylase 6 [Homo sapiens] 30 0.42
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 29 0.72
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 29 0.72
gi|118918426 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra... 29 0.94
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 28 1.2
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 28 1.6
gi|155722990 solute carrier family 4 (anion exchanger), member 1... 28 1.6
gi|4505471 nth endonuclease III-like 1 [Homo sapiens] 28 2.1
>gi|239753463 PREDICTED: hypothetical protein XP_002345663 [Homo
sapiens]
Length = 119
Score = 239 bits (609), Expect = 5e-64
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK 60
MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK
Sbjct: 1 MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK 60
Query: 61 EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT 119
EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT
Sbjct: 61 EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT 119
>gi|239748026 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 239 bits (609), Expect = 5e-64
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK 60
MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK
Sbjct: 1 MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK 60
Query: 61 EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT 119
EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT
Sbjct: 61 EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT 119
>gi|239741922 PREDICTED: hypothetical protein XP_002344247 [Homo
sapiens]
Length = 119
Score = 239 bits (609), Expect = 5e-64
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK 60
MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK
Sbjct: 1 MLEGAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEK 60
Query: 61 EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT 119
EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT
Sbjct: 61 EPGLTGTVQPEGASVGTEAGESGSPMRRMLSLFSLRHLLHFHSLWGRDVHTALVYRTAT 119
>gi|239754597 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.008
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 5 AGADPPLAVLVREASYSSQICVSSSVRVS-LRT-WKSAGPLRSREARGPAEQPPSAEKEP 62
+ A PPL+ L S +S+I +S S + S RT W P R PA P+ + P
Sbjct: 67 SAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRSPATWRPARTQPP 126
Query: 63 GLTGTVQPEGASVGTEAGESGSP 85
G +PE S G A SP
Sbjct: 127 GGVRPREPEPESQGRRASLEWSP 149
>gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo
sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.008
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 5 AGADPPLAVLVREASYSSQICVSSSVRVS-LRT-WKSAGPLRSREARGPAEQPPSAEKEP 62
+ A PPL+ L S +S+I +S S + S RT W P R PA P+ + P
Sbjct: 67 SAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRSPATWRPARTQPP 126
Query: 63 GLTGTVQPEGASVGTEAGESGSP 85
G +PE S G A SP
Sbjct: 127 GGVRPREPEPESQGRRASLEWSP 149
>gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo
sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.008
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 5 AGADPPLAVLVREASYSSQICVSSSVRVS-LRT-WKSAGPLRSREARGPAEQPPSAEKEP 62
+ A PPL+ L S +S+I +S S + S RT W P R PA P+ + P
Sbjct: 67 SAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRSPATWRPARTQPP 126
Query: 63 GLTGTVQPEGASVGTEAGESGSP 85
G +PE S G A SP
Sbjct: 127 GGVRPREPEPESQGRRASLEWSP 149
>gi|239508884 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.008
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 5 AGADPPLAVLVREASYSSQICVSSSVRVS-LRT-WKSAGPLRSREARGPAEQPPSAEKEP 62
+ A PPL+ L S +S+I +S S + S RT W P R PA P+ + P
Sbjct: 67 SAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRSPATWRPARTQPP 126
Query: 63 GLTGTVQPEGASVGTEAGESGSP 85
G +PE S G A SP
Sbjct: 127 GGVRPREPEPESQGRRASLEWSP 149
>gi|21729876 ATP-binding cassette, sub-family C, member 11 isoform b
[Homo sapiens]
Length = 1344
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 8 DPPLAVLVREASYS-SQIC---VSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKEPG 63
DP A++ EA+ S Q C V+ ++ + S G R R+A GP E+ S E
Sbjct: 469 DPSKALVFEEATLSWQQTCPGIVNGALELERNGHASEGMTRPRDALGPEEEGNSLGPELH 528
Query: 64 LTGTVQPEGASVGTEAGESGSPMRRMLS-LFSLRHLL 99
V +G +G G +GS +LS + HLL
Sbjct: 529 KINLVVSKGMMLGV-CGNTGSGKSSLLSAILEEMHLL 564
>gi|21729873 ATP-binding cassette, sub-family C, member 11 isoform a
[Homo sapiens]
Length = 1382
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 8 DPPLAVLVREASYS-SQIC---VSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKEPG 63
DP A++ EA+ S Q C V+ ++ + S G R R+A GP E+ S E
Sbjct: 469 DPSKALVFEEATLSWQQTCPGIVNGALELERNGHASEGMTRPRDALGPEEEGNSLGPELH 528
Query: 64 LTGTVQPEGASVGTEAGESGSPMRRMLS-LFSLRHLL 99
V +G +G G +GS +LS + HLL
Sbjct: 529 KINLVVSKGMMLGV-CGNTGSGKSSLLSAILEEMHLL 564
>gi|15149474 ATP-binding cassette, sub-family C, member 11 isoform a
[Homo sapiens]
Length = 1382
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 8 DPPLAVLVREASYS-SQIC---VSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKEPG 63
DP A++ EA+ S Q C V+ ++ + S G R R+A GP E+ S E
Sbjct: 469 DPSKALVFEEATLSWQQTCPGIVNGALELERNGHASEGMTRPRDALGPEEEGNSLGPELH 528
Query: 64 LTGTVQPEGASVGTEAGESGSPMRRMLS-LFSLRHLL 99
V +G +G G +GS +LS + HLL
Sbjct: 529 KINLVVSKGMMLGV-CGNTGSGKSSLLSAILEEMHLL 564
>gi|169211037 PREDICTED: similar to mitogen-activated protein
kinase 8 interacting protein 1 [Homo sapiens]
Length = 423
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 46 REARGPAEQPPSAE--KEPGLTGTVQPEGASVGTEAGESGSPMR-RMLSLF 93
R AR P PP AE +EP G Q +G S G +G++ P R L+LF
Sbjct: 24 RAARRPGAGPPKAESGQEPASRGQGQSQGQSQGPGSGDTYRPKRPTTLNLF 74
>gi|239740950 PREDICTED: similar to mitogen-activated protein
kinase 8 interacting protein 1 [Homo sapiens]
Length = 442
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 46 REARGPAEQPPSAE--KEPGLTGTVQPEGASVGTEAGESGSPMR-RMLSLF 93
R AR P PP AE +EP G Q +G S G +G++ P R L+LF
Sbjct: 27 RAARRPGAGPPKAESGQEPASRGQGQSQGQSQGPGSGDTYRPKRPTTLNLF 77
>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
[Homo sapiens]
Length = 711
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 46 REARGPAEQPPSAE--KEPGLTGTVQPEGASVGTEAGESGSPMR-RMLSLF 93
R AR P PP AE +EP G Q +G S G +G++ P R L+LF
Sbjct: 117 RAARRPGAGPPKAESGQEPASRGQGQSQGQSQGPGSGDTYRPKRPTTLNLF 167
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 37 WKSAG------PLRSREARGPAEQPPSAEKEPGLTGTVQPEGASVGTEAGESG--SPMRR 88
W +AG P SR GPA+ PPS EP E G+E SG +P RR
Sbjct: 330 WPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEETPGRR 389
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 37 WKSAG------PLRSREARGPAEQPPSAEKEPGLTGTVQPEGASVGTEAGESG--SPMRR 88
W +AG P SR GPA+ PPS EP E G+E SG +P RR
Sbjct: 330 WPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEETPGRR 389
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 37 WKSAG------PLRSREARGPAEQPPSAEKEPGLTGTVQPEGASVGTEAGESG--SPMRR 88
W +AG P SR GPA+ PPS EP E G+E SG +P RR
Sbjct: 330 WPAAGAPGAPNPAESRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEETPGRR 389
>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
Length = 2533
Score = 31.2 bits (69), Expect = 0.19
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 43 LRSREARGPAEQPPSAEKEPGLTGTVQPEGASVGTEAGE 81
LRS + GP PP E+ PGL+ P ++ T E
Sbjct: 759 LRSDDGLGPPLPPPEEERHPGLSNLATPHRLAIETTMNE 797
>gi|13128864 histone deacetylase 6 [Homo sapiens]
Length = 1215
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 GADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKEP 62
G PPL L R + ++ +++V R W+S ++ + GP+ +K P
Sbjct: 800 GDPPPLLTLPRPPLSGALASITETIQVHRRYWRSLRVMKVEDREGPSSSKLVTKKAP 856
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 27 SSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKE 61
S+ +R S TW+ P R+ A GP PSAE E
Sbjct: 322 STCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 356
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 27 SSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKE 61
S+ +R S TW+ P R+ A GP PSAE E
Sbjct: 416 STCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 450
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 27 SSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKE 61
S+ +R S TW+ P R+ A GP PSAE E
Sbjct: 416 STCLRPSPATWQGGAPYRAIFAAGPRLSAPSAEAE 450
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 29.3 bits (64), Expect = 0.72
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 4 GAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKEPG 63
G A L +RE S+ VSSS R R W P++ +A+ P +PP +
Sbjct: 278 GRAAADALNRQIREEVASA---VSSSYRNEFRAWTDIKPVKPIKAK-PQYKPPDDKMVHE 333
Query: 64 LTGTVQPEG-ASVGTEAGESGSPMRRMLSLFS 94
+ + Q +G AS T A RR+ SL+S
Sbjct: 334 TSYSAQFKGEASKPTTADNKVIDRRRIRSLYS 365
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 29.3 bits (64), Expect = 0.72
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 4 GAGADPPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPSAEKEPG 63
G A L +RE S+ VSSS R R W P++ +A+ P +PP +
Sbjct: 278 GRAAADALNRQIREEVASA---VSSSYRNEFRAWTDIKPVKPIKAK-PQYKPPDDKMVHE 333
Query: 64 LTGTVQPEG-ASVGTEAGESGSPMRRMLSLFS 94
+ + Q +G AS T A RR+ SL+S
Sbjct: 334 TSYSAQFKGEASKPTTADNKVIDRRRIRSLYS 365
>gi|118918426 UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 6 [Homo
sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.94
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 32 VSLRTWKSAGPLRSREARGPAEQ-------PPSAEKEPG--LTGTVQPEGASVGTEAGES 82
++L+ W P RE R P E+ P+A++ P + G AS A
Sbjct: 24 LALQQWFLQAPRSPREERSPQEETPEGPTDAPAADEPPSELVPGPPCVANASANATADFE 83
Query: 83 GSPMRRMLSLFSLRHLLHFHSLW--------GRDVHTALVYRTA 118
P R+ RH HF LW GR V L ++A
Sbjct: 84 QLP-ARIQDFLRYRHCRHFPLLWDAPAKCAGGRGVFLLLAVKSA 126
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 9 PPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLR-----SREARGPAEQPPSAEKEPG 63
P + L R S ++C S R R+ + + LR SR P PS P
Sbjct: 22 PRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
Query: 64 LTGTVQPEGASVGTEAGESGSPMRRMLSLFS 94
G GAS +E P R SL S
Sbjct: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRS 112
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 9 PPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLR-----SREARGPAEQPPSAEKEPG 63
P + L R S ++C S R R+ + + LR SR P PS P
Sbjct: 22 PRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
Query: 64 LTGTVQPEGASVGTEAGESGSPMRRMLSLFS 94
G GAS +E P R SL S
Sbjct: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRS 112
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 9 PPLAVLVREASYSSQICVSSSVRVSLRTWKSAGPLR-----SREARGPAEQPPSAEKEPG 63
P + L R S ++C S R R+ + + LR SR P PS P
Sbjct: 22 PRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
Query: 64 LTGTVQPEGASVGTEAGESGSPMRRMLSLFS 94
G GAS +E P R SL S
Sbjct: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRS 112
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 41 GPLRSREARGPAEQP-----PSAEKEPGLTGTVQPEGASVGTEAGESGSPMRR 88
GPL + RG P P + PGL G P G V +AG G P R
Sbjct: 338 GPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGER 390
>gi|155722990 solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Homo sapiens]
Length = 796
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 16 REASYSSQICVSSSVRVSLRTWKSAGPLRSREARGPAEQPPS-----AEKEPGLTGTVQP 70
++ S ++ +C S + KS G L+ ++ GP + PP+ E +P V P
Sbjct: 721 QDCSKTTSLCAGPSASKN-EYEKSRGELKKKKTPGPGKLPPTLSSKYPEDDPDYCVWVPP 779
Query: 71 EGAS 74
EG S
Sbjct: 780 EGQS 783
>gi|4505471 nth endonuclease III-like 1 [Homo sapiens]
Length = 312
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 41 GPLRSREARGPAEQPPSAEKEPGLTGTVQPEGASVGTEAGESGSPMR 87
GPLR REA A + S K P ++ +E GE P++
Sbjct: 37 GPLRRREAAAEARKSHSPVKRPRKAQRLRVAYEGSDSEKGEGAEPLK 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,179,546
Number of Sequences: 37866
Number of extensions: 239298
Number of successful extensions: 1206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 125
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.