Guide to the Human Genome
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Name: LOC100291839 Sequence: fasta or formatted (119aa) NCBI GI: 239753463
Description:

PREDICTED: hypothetical protein XP_002345663

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         12           1
 C cysteine            0.8          1           1
 D aspartate           1.7          2           1
 E glutamate           7.6          9           1
 F phenylalanine       1.7          2           1
 G glycine             9.2         11           1
 H histidine           3.4          4           1
 I isoleucine          0.8          1           1
 K lysine              1.7          2           1
 L leucine            10.9         13           2
 M methionine          2.5          3           1
 N asparagine          0.0          0           0
 P proline             7.6          9           2
 Q glutamine           2.5          3           1
 R arginine            9.2         11           2
 S serine             13.4         16           3
 T threonine           5.9          7           1
 V valine              7.6          9           1
 W tryptophan          1.7          2           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345663 
LOC100288992          1.000   PREDICTED: hypothetical protein 
LOC100288992          1.000   PREDICTED: hypothetical protein XP_002344247 
LOC100292307          0.051   PREDICTED: hypothetical protein 
LOC100290778          0.051   PREDICTED: hypothetical protein XP_002346922 
LOC100288747          0.051   PREDICTED: hypothetical protein XP_002342803 
LOC100288747          0.051   PREDICTED: hypothetical protein 
ABCC11                0.033   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.033   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.033   ATP-binding cassette, sub-family C, member 11 isofor...
LOC644253             0.033   PREDICTED: similar to mitogen-activated protein kin...
LOC100294344          0.033   PREDICTED: similar to mitogen-activated protein kin...
MAPK8IP1              0.033   mitogen-activated protein kinase 8 interacting protei...
LOC645602             0.033   PREDICTED: hypothetical protein 
LOC645602             0.033   PREDICTED: hypothetical protein 
LOC645602             0.033   PREDICTED: hypothetical protein 
KIAA0467              0.028   hypothetical protein LOC23334 
HDAC6                 0.023   histone deacetylase 6 
LOC643355             0.023   PREDICTED: hypothetical protein 
LOC643355             0.023   PREDICTED: hypothetical protein 
LOC643355             0.023   PREDICTED: hypothetical protein 
MAP6                  0.019   microtubule-associated protein 6 isoform 2 
MAP6                  0.019   microtubule-associated protein 6 isoform 1 
B3GNT6                0.019   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
LOC100293644          0.014   PREDICTED: hypothetical protein 
LOC100287563          0.014   PREDICTED: hypothetical protein 
LOC100287563          0.014   PREDICTED: hypothetical protein XP_002343733 
COL4A1                0.014   alpha 1 type IV collagen preproprotein 
SLC4A1AP              0.014   solute carrier family 4 (anion exchanger), member 1...
NTHL1                 0.014   nth endonuclease III-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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