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Search of human proteins with 239747917
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
(327 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo sap... 663 0.0
gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo sap... 663 0.0
gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo sap... 663 0.0
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 44 2e-04
gi|24415404 MDN1, midasin homolog [Homo sapiens] 43 3e-04
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 42 0.001
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 42 0.001
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 41 0.002
gi|55956788 nucleolin [Homo sapiens] 40 0.002
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 39 0.006
gi|42740903 MTERF domain containing 2 [Homo sapiens] 39 0.008
gi|51477718 TATA box binding protein-associated factor, RNA poly... 39 0.008
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 38 0.011
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 38 0.011
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 38 0.011
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens] 38 0.014
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens] 38 0.014
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens] 38 0.014
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ... 38 0.014
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 38 0.014
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 38 0.014
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 37 0.018
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 37 0.018
gi|17975763 myelin transcription factor 1 [Homo sapiens] 37 0.018
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 37 0.024
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 37 0.024
gi|110347463 human immunodeficiency virus type I enhancer bindin... 37 0.024
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 37 0.024
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 37 0.031
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 37 0.031
>gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 663 bits (1710), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF
Sbjct: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
Query: 61 GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP
Sbjct: 61 GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
Query: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET
Sbjct: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
Query: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL
Sbjct: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
Query: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD
Sbjct: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
Query: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
EDSSGESKGESDEELSDESSDEGEDGS
Sbjct: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
>gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 663 bits (1710), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF
Sbjct: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
Query: 61 GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP
Sbjct: 61 GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
Query: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET
Sbjct: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
Query: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL
Sbjct: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
Query: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD
Sbjct: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
Query: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
EDSSGESKGESDEELSDESSDEGEDGS
Sbjct: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
>gi|239741811 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 663 bits (1710), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF
Sbjct: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
Query: 61 GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP
Sbjct: 61 GWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQTTPRPGARVCGPLYRTWFWLWAPGP 120
Query: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET
Sbjct: 121 VAARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPET 180
Query: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL
Sbjct: 181 GEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLEL 240
Query: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD
Sbjct: 241 MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSD 300
Query: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
EDSSGESKGESDEELSDESSDEGEDGS
Sbjct: 301 EDSSGESKGESDEELSDESSDEGEDGS 327
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 43.9 bits (102), Expect = 2e-04
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 36/158 (22%)
Query: 181 GEVSKDAVIV--------KQEKNNEYCLQDIDDKLSESAEDDGEDD--TNDEDDDEDSNP 230
GE D+V++ QE E L+D+ D+L E G + +DE
Sbjct: 2321 GEAETDSVVIAGQPEVLSSQEMQVENELEDLIDELLERDGGSGNSTIIVSRSGEDESQED 2380
Query: 231 KKNTQAPLEL-MAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKT 289
+AP L A L+A RE + I +PE+ E E T
Sbjct: 2381 VLMDEAPSNLSQASTLQAN--REDSMN--------ILDPEDEE--------------EHT 2416
Query: 290 QNHEQDGENSDE-DSSGESKGESDEELSDESSDEGEDG 326
Q + G N DE DS E + E ++E D+ DEGE+G
Sbjct: 2417 QEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEG 2454
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 201 QDIDDKLSESAEDDGEDD---TNDEDDDEDSN 229
QD +++ E EDD EDD DEDDD+D +
Sbjct: 2432 QDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGS 2463
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 203 IDDKLSESAEDD-GEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQ 261
I ++LS+ E GE+DT E+ P+ N Q +LM E A E L +
Sbjct: 1287 IRERLSKEKEGSRGEEDTGQEEGGSRREPQVNQQQLQQLMDMGFTREHAMEALLNTSTME 1346
Query: 262 MILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSD 321
Y +P ++ ++ + E+ Q + +D + + ES EE++ +
Sbjct: 1347 QATEYLLTHP-PPIMGGVVRDLSMSEEDQMMRAIAMSLGQDIPMDQRAESPEEVACRKEE 1405
Query: 322 E 322
E
Sbjct: 1406 E 1406
Score = 28.9 bits (63), Expect = 6.5
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 1 MDTDIPTFFPSSALLKPPPSAAARASSTRRAVSTATLRSRLGAPSSARAASRAGSRCVPF 60
M+TD PT S K P+ AAR + +S + SRLG RA + V
Sbjct: 1022 METDEPTASDSKGKSKITPAMAARIKQIKPLLSAS---SRLG-----RALAELFGLLVKL 1073
Query: 61 GWSAEEGRQLVRHSEATTGLPLP---SPVCSLTQ----------PPQQTTPR 99
+ ++ H+ +TT P P S +LT+ PP TPR
Sbjct: 1074 CVGSPVRQRRSHHAASTTTAPTPAARSTASALTKLLTKGLSWQPPPYTPTPR 1125
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 43.1 bits (100), Expect = 3e-04
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
Query: 148 SEEVRKRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKL 207
S++ +K +A QG ++ E ++E + E D QEK E D+ D L
Sbjct: 4826 SQQDKKEEKEEAEADDGGQGEDKINEQIDERDYDENEVDPYHGNQEKVPEPEALDLPDDL 4885
Query: 208 SESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE 267
+ +ED + D ++ E+ NP + + P E E AE E + + Q E
Sbjct: 4886 NLDSEDKNGGEDTDNEEGEEENPLEIKEKPEEAGHE---AEERGETETDQNESQS--PQE 4940
Query: 268 PENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDE-DSSGESKGESDEELSDESSDEG 323
PE +++ EE + T +QDG+ + + E + +S EE E+ +EG
Sbjct: 4941 PEEGPSEDDKAEGEEEM---DTGADDQDGDAAQHPEEHSEEQQQSVEEKDKEADEEG 4994
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 18/141 (12%)
Query: 190 VKQEKNNEYCLQDIDDK-----LSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEF 244
+K E N +D D K L E EDD + D+ D D+ +A + + E
Sbjct: 4720 IKGEDNAIEMSEDFDGKMHDGELEEQEEDDEKSDSEGGDLDKHMGDLNGEEA--DKLDER 4777
Query: 245 LRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSS 304
L + E E E+ + +E ++E ++ D NS++D S
Sbjct: 4778 LWGDDDEEED-----------EEEEDNKTEETGPGMDEEDSELVAKDDNLDSGNSNKDKS 4826
Query: 305 GESKGESDEELSDESSDEGED 325
+ K E EE + +GED
Sbjct: 4827 QQDKKEEKEEAEADDGGQGED 4847
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
E + V+ P + E S++A + QE ++E ++ +SES D+ + T+ +D EDS+
Sbjct: 328 EESQNVDGPSS-ESSQEANLSSQENSSE----SQEEVVSESRGDNPDPTTSYVEDQEDSD 382
Query: 230 PKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE--PENPEAKEFFTL--IEEMLL 285
+ + ++ +RE Q + + + E PE+PE + + ++
Sbjct: 383 SSEEDSSHTLSHSK----SESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSS 438
Query: 286 MEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
++Q+ E E D DS S+ + D ++ S EDG
Sbjct: 439 SAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEEDG 479
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
E + V+ P + E S++A + QE ++E ++ +SES D+ + T+ +D EDS+
Sbjct: 312 EESQNVDGPSS-ESSQEANLSSQENSSE----SQEEVVSESRGDNPDPTTSYVEDQEDSD 366
Query: 230 PKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE--PENPEAKEFFTL--IEEMLL 285
+ + ++ +RE Q + + + E PE+PE + + ++
Sbjct: 367 SSEEDSSHTLSHSK----SESREEQADSESSESLNFSEESPESPEDENSSSQEGLQSHSS 422
Query: 286 MEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
++Q+ E E D DS S+ + D ++ S EDG
Sbjct: 423 SAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEEDG 463
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNE--YCLQDIDDKLSESAEDDGEDDTNDEDDDED 227
EL E E + + ++ V VK +NNE + +D K + + +D+ ++E +D+D
Sbjct: 61 ELEELSLEAQGIKADRETVAVKPTENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKD 120
Query: 228 SNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLME 287
S KK + +E+ + + + +F L ++
Sbjct: 121 SKSKKTAKPKVEMYSG--------------------------SDDDDDFNKLPKKAKGKA 154
Query: 288 KTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
+ N + DG DED+S + K S S ES DE ++
Sbjct: 155 QKSNKKWDGSEEDEDNSKKIKERSRINSSGESGDESDE 192
Score = 39.3 bits (90), Expect = 0.005
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 58/212 (27%)
Query: 123 ARGRREGRMR---ATGVRLACGTLLPQ----WSEEVRKRLSLQARCTLDSQGGCELMETV 175
AR R E ++ A GV + LP+ + ++ RK++ Q L+S+ E+ E++
Sbjct: 415 ARARAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQ----LESK---EVSESM 467
Query: 176 NEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQ 235
EV + V K+E ++ + E ED G DD DE++ + +
Sbjct: 468 ELCAAVEVMEQGVPEKEETP-----PPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGNK 522
Query: 236 APLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQD 295
+E+ ENPE +E E+ + E+D
Sbjct: 523 VHIEVK---------------------------ENPEEEE-----------EEEEEEEED 544
Query: 296 GENSDEDSS-GESKGESDEELSDESSDEGEDG 326
E+ +E+ GES+G +E ++ SDE + G
Sbjct: 545 EESEEEEEEEGESEGSEGDEEDEKVSDEKDSG 576
Score = 30.8 bits (68), Expect = 1.7
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 172 METVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGED----DTNDEDDDED 227
+E PE E ++ ++E++ E ++ ++ SE +E D ED D D D
Sbjct: 525 IEVKENPEEEEEEEE----EEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLD 580
Query: 228 SNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLI------- 280
P K + E ++ R + R Y AK+ + + +N ++ I
Sbjct: 581 KKPSKEMSSDSEYDSDDDRTKEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPIICVLGHV 640
Query: 281 ---EEMLLMEKTQNHEQDGE 297
+ +L + H QDGE
Sbjct: 641 DTGKTKILDKLRHTHVQDGE 660
Score = 30.0 bits (66), Expect = 2.9
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)
Query: 177 EPETGEVSKDAVIVKQEKNNEYCLQD---IDDKLSESAEDDGEDDTNDEDDDEDSNPKKN 233
E ETG+ + Q K E ++ +D + ++E+ E T EDD+E KK+
Sbjct: 258 ELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKD 317
Query: 234 TQAPLELMAEFLRAEMAREYQLAKKLCQMIL--IYEPENPEAKEFFTLIEEMLLMEKTQN 291
+ E + + + K Q L + E E + +E I+ + +E +
Sbjct: 318 KKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRK 377
Query: 292 HEQDGENSDEDSSGESKGESDEELSDE 318
E+ E + + + E E L E
Sbjct: 378 EEERLEQEKRERKKQKEKERKERLKKE 404
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 28/116 (24%)
Query: 210 SAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
S ++D EDD +DEDDD+D +A A+ KK +++ +
Sbjct: 184 SEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAK------------GKKAAKVVPV---- 227
Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
+AK + + ++ E+D E+ D+D + + + DE+ +E +E E+
Sbjct: 228 --KAKN----------VAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEE 271
Score = 38.5 bits (88), Expect = 0.008
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
E MET P G+ + V VK + E ++ DD+ + +DD EDD +D+D+D++
Sbjct: 209 EAMETT--PAKGKKAAKVVPVKAKNVAEDEDEEEDDE--DEDDDDDEDDEDDDDEDDEEE 264
Query: 230 PKKNTQAPLELMAEFLRAEMARE 252
++ + P++ + EMA++
Sbjct: 265 EEEEEEEPVKEAPGKRKKEMAKQ 287
Score = 34.3 bits (77), Expect = 0.16
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 206 KLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILI 265
K +S E++ +D DE+DDED + ++ P + A E + +
Sbjct: 141 KKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDD 200
Query: 266 YEPENPEAKEFFTLIEE-----MLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESS 320
E ++ E + T + ++ K +N +D + ++D + + D+E D+
Sbjct: 201 DEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDED 260
Query: 321 DEGED 325
DE E+
Sbjct: 261 DEEEE 265
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 38.9 bits (89), Expect = 0.006
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 208 SESAEDDGEDDTNDEDDDEDS--------NPKKNTQAPLELMAEFLRAEMAREYQLAKKL 259
S + E+ +++ ED+D+++ + +K +A + M E EM +E ++ KK
Sbjct: 332 SPNEEESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKK- 390
Query: 260 CQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSG-------------- 305
E E E +E EE + K + + + DED G
Sbjct: 391 ------EEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQDPGT 444
Query: 306 -ESKGESDEELSDESSDEGED 325
E+ GE +EE DE+ D+ D
Sbjct: 445 EETYGEVEEEPLDEAQDDDLD 465
Score = 29.3 bits (64), Expect = 5.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 173 ETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESA-----EDDGED-DTNDEDDDE 226
+ + E E E+ K+ + K+E+ E +++ K E E++GE D DED+D
Sbjct: 371 QEMKEKEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDG 430
Query: 227 DSNPKKNTQ 235
P+ Q
Sbjct: 431 GQKPEGEPQ 439
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 231 KKNTQAPLELMAEFLRAEMAR-----------EYQLAKKLCQMILIYEPENPEAKEFFTL 279
K TQ P L+ + LR A E+Q+ KKL L E E E+ T
Sbjct: 280 KGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL----LAREEEESESS---TS 332
Query: 280 IEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
++ +++ ++ + + +N ++D+ + E D+E D DE +D
Sbjct: 333 DDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDD 378
Score = 34.7 bits (78), Expect = 0.12
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 179 ETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQA 236
E +V K + ++E++ D L E +DD E+D +++D+DED + + + +A
Sbjct: 311 EEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEA 368
Score = 31.6 bits (70), Expect = 1.0
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 173 ETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDED 227
E +E T + + ++ ++ ++E + D+ + EDD E + NDED+D+D
Sbjct: 324 EEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDD 378
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 170 ELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDED 227
E + ++ + + +D +E N+E D D+ + +D+ ED+ DEDDDE+
Sbjct: 326 ESESSTSDDKRASLDEDEDDDDEEDNDE---DDNDEDDDDEDDDEAEDNDEDEDDDEE 380
Score = 29.3 bits (64), Expect = 5.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 201 QDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
+D DD+ +D+ EDD +++DD+ + N
Sbjct: 343 EDDDDEEDNDEDDNDEDDDDEDDDEAEDN 371
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 38.5 bits (88), Expect = 0.008
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 27/158 (17%)
Query: 163 LDSQG---GCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDT 219
++SQG G + ++ + G S + ++++ ++ D D+ + ED+ ED+
Sbjct: 291 IESQGSIPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDED 350
Query: 220 NDEDDDEDSNPKKNTQAPLELMAEFLRAEMAR------------EYQLAKK--------- 258
DED +E+ +L AEF+ + R + Q+ KK
Sbjct: 351 EDEDKEEEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQN 410
Query: 259 --LCQMILIYEPENPEAKEFF-TLIEEMLLMEKTQNHE 293
Q LI + EN K F +++E++ L EK +N +
Sbjct: 411 KAQRQKDLIMKVENLTLKNHFQSVLEQLELQEKQKNEK 448
Score = 28.5 bits (62), Expect = 8.5
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 277 FTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
+ ++ EM + N++ D + DED + + DE+ +E D E+
Sbjct: 318 YDMLREMF-SDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDCSEE 365
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 38.1 bits (87), Expect = 0.011
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 156 SLQARCTLDSQGGCELMETVNEPE-----TGEVSKDAVIVKQEKNNEYCLQDIDDKLSES 210
S++ LD + L E +EPE E ++ + +K + +D++ E
Sbjct: 427 SMEEALKLDQE--MPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEI 484
Query: 211 AEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPEN 270
E+ ED D D + ++ +Y+ A+K +L+
Sbjct: 485 EEEKTEDKLKDNDTENK--------------------DVDDDYETAEKKENELLLGRKNT 524
Query: 271 PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
P+ KE +E + + E+ E + +S +S+GE DEE
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEE 568
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 25/155 (16%)
Query: 190 VKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAP---LELMAEFLR 246
VK+EK +D+++ + E+ + D E + + + N N+++ +EL + R
Sbjct: 417 VKEEK------KDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGR 470
Query: 247 AEMAREYQLAKKLCQ------MILIYEPENPEAKEFFTLIE----EMLLMEKTQNHEQDG 296
+AR+ KK + + + EN + + + E E+LL K +++
Sbjct: 471 RRIARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEK 530
Query: 297 -----ENSDEDS-SGESKGESDEELSDESSDEGED 325
E+SD+DS E K + EE + EGE+
Sbjct: 531 KIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 38.1 bits (87), Expect = 0.011
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 156 SLQARCTLDSQGGCELMETVNEPE-----TGEVSKDAVIVKQEKNNEYCLQDIDDKLSES 210
S++ LD + L E +EPE E ++ + +K + +D++ E
Sbjct: 427 SMEEALKLDQE--MPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEI 484
Query: 211 AEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPEN 270
E+ ED D D + ++ +Y+ A+K +L+
Sbjct: 485 EEEKTEDKLKDNDTENK--------------------DVDDDYETAEKKENELLLGRKNT 524
Query: 271 PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
P+ KE +E + + E+ E + +S +S+GE DEE
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEE 568
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 25/155 (16%)
Query: 190 VKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAP---LELMAEFLR 246
VK+EK +D+++ + E+ + D E + + + N N+++ +EL + R
Sbjct: 417 VKEEK------KDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGR 470
Query: 247 AEMAREYQLAKKLCQ------MILIYEPENPEAKEFFTLIE----EMLLMEKTQNHEQDG 296
+AR+ KK + + + EN + + + E E+LL K +++
Sbjct: 471 RRIARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEK 530
Query: 297 -----ENSDEDS-SGESKGESDEELSDESSDEGED 325
E+SD+DS E K + EE + EGE+
Sbjct: 531 KIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 38.1 bits (87), Expect = 0.011
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 156 SLQARCTLDSQGGCELMETVNEPE-----TGEVSKDAVIVKQEKNNEYCLQDIDDKLSES 210
S++ LD + L E +EPE E ++ + +K + +D++ E
Sbjct: 427 SMEEALKLDQE--MPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEI 484
Query: 211 AEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPEN 270
E+ ED D D + ++ +Y+ A+K +L+
Sbjct: 485 EEEKTEDKLKDNDTENK--------------------DVDDDYETAEKKENELLLGRKNT 524
Query: 271 PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
P+ KE +E + + E+ E + +S +S+GE DEE
Sbjct: 525 PKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEE 568
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 25/155 (16%)
Query: 190 VKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAP---LELMAEFLR 246
VK+EK +D+++ + E+ + D E + + + N N+++ +EL + R
Sbjct: 417 VKEEK------KDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGR 470
Query: 247 AEMAREYQLAKKLCQ------MILIYEPENPEAKEFFTLIE----EMLLMEKTQNHEQDG 296
+AR+ KK + + + EN + + + E E+LL K +++
Sbjct: 471 RRIARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEK 530
Query: 297 -----ENSDEDS-SGESKGESDEELSDESSDEGED 325
E+SD+DS E K + EE + EGE+
Sbjct: 531 KIKKQEDSDKDSDEEEEKSQEREETESKCDSEGEE 565
>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
Length = 1507
Score = 37.7 bits (86), Expect = 0.014
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 50/158 (31%)
Query: 169 CELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDS 228
C L N+ ++ D V E + +D D++ + E+ E+D +++DDD D
Sbjct: 1364 CYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDD 1423
Query: 229 NPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEK 288
+ +T + L AE +E+
Sbjct: 1424 LDELDTD-------QLLEAE-------------------------------------LEE 1439
Query: 289 TQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
N+E GE+ D D S SDEEL++ +EGEDG
Sbjct: 1440 DDNNENAGEDGDNDFS-----PSDEELAN-LLEEGEDG 1471
>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 37.7 bits (86), Expect = 0.014
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 38 RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
R LGAP A +RA G R G SA G + G P +CS PP
Sbjct: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
Query: 96 TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
T + GP +R WLW P P R G R+R L G LL Q
Sbjct: 83 GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
Query: 147 WSEEVRKRLS 156
+ +RL+
Sbjct: 142 RRLQRGRRLA 151
>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 37.7 bits (86), Expect = 0.014
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 38 RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
R LGAP A +RA G R G SA G + G P +CS PP
Sbjct: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
Query: 96 TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
T + GP +R WLW P P R G R+R L G LL Q
Sbjct: 83 GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
Query: 147 WSEEVRKRLS 156
+ +RL+
Sbjct: 142 RRLQRGRRLA 151
>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
Length = 229
Score = 37.7 bits (86), Expect = 0.014
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 38 RSRLGAPSSARAASRA--GSRCVPFGWSAEEGRQLVRHSEATTGLPLPSPVCSLTQPPQQ 95
R LGAP A +RA G R G SA G + G P +CS PP
Sbjct: 24 RGALGAPGRAVGVARASPGRRAGLCGASAALGTRPAGRLRPP-GSAHPGVICSCRAPPIP 82
Query: 96 TTPRPGARVCGPLYRTWFWLWAPGPVAARGRREG---------RMRATGVRLACGTLLPQ 146
T + GP +R WLW P P R G R+R L G LL Q
Sbjct: 83 GTSATPEDLAGPAFRE-AWLWRPCPPRPRTFERGALHQHRVDLRVRKELAHLLQGALLLQ 141
Query: 147 WSEEVRKRLS 156
+ +RL+
Sbjct: 142 RRLQRGRRLA 151
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 37.7 bits (86), Expect = 0.014
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 174 TVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKN 233
TV++ E+GE K+ K E+ ++ S+ED + D + E+ + ++
Sbjct: 1308 TVSDGESGEE-------KKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESED 1360
Query: 234 TQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHE 293
Q P A+ E + KK + I + E + E K EE E+ + E
Sbjct: 1361 EQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEE 1420
Query: 294 QDGENSDEDSSGESKGESDEELSDESSDE 322
++ E DE+ +S G+ +++ D+
Sbjct: 1421 EEEEEEDENDDSKSPGKGRKKIRKILKDD 1449
Score = 37.4 bits (85), Expect = 0.018
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 150 EVRKRLSLQA-RCTLDSQGGCELMETVNEPETGEVSKD-------AVIVKQEKNNEYCLQ 201
E+R+R +L + R T + Q G + E + K AVIVK++K N
Sbjct: 1095 ELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTS 1154
Query: 202 ------DIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQL 255
DI S EDD ++ + DE L F ++ + + L
Sbjct: 1155 TKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQS--SGDEAL 1212
Query: 256 AKKLCQMILIYEPEN-PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
+K + + + +N PE + + ++MLL E N D + S +D E K + ++
Sbjct: 1213 SKSVPVTVDDDDDDNDPENR----IAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1268
Query: 315 LSDESSDE 322
+ DE
Sbjct: 1269 NEENPGDE 1276
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 37.7 bits (86), Expect = 0.014
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 174 TVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKN 233
TV++ E+GE K+ K E+ ++ S+ED + D + E+ + ++
Sbjct: 1346 TVSDGESGEE-------KKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESED 1398
Query: 234 TQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHE 293
Q P A+ E + KK + I + E + E K EE E+ + E
Sbjct: 1399 EQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEE 1458
Query: 294 QDGENSDEDSSGESKGESDEELSDESSDE 322
++ E DE+ +S G+ +++ D+
Sbjct: 1459 EEEEEEDENDDSKSPGKGRKKIRKILKDD 1487
Score = 37.4 bits (85), Expect = 0.018
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 150 EVRKRLSLQA-RCTLDSQGGCELMETVNEPETGEVSKD-------AVIVKQEKNNEYCLQ 201
E+R+R +L + R T + Q G + E + K AVIVK++K N
Sbjct: 1133 ELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTS 1192
Query: 202 ------DIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQL 255
DI S EDD ++ + DE L F ++ + + L
Sbjct: 1193 TKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQS--SGDEAL 1250
Query: 256 AKKLCQMILIYEPEN-PEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
+K + + + +N PE + + ++MLL E N D + S +D E K + ++
Sbjct: 1251 SKSVPVTVDDDDDDNDPENR----IAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1306
Query: 315 LSDESSDE 322
+ DE
Sbjct: 1307 NEENPGDE 1314
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 37.4 bits (85), Expect = 0.018
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
N + F L+ ++ ++ +Q+ +SD G K E DEE DE E EDG
Sbjct: 149 NDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDG 205
Score = 32.0 bits (71), Expect = 0.77
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 266 YEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
Y+PE+ EA + ++ + E+ + E + + +ED E E ++E D D+ +D
Sbjct: 168 YDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKD 227
Score = 32.0 bits (71), Expect = 0.77
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 164 DSQGGCELMETVNEPETGEVSKDAVI-------VKQEKNNEYCLQDIDDK--LSESAEDD 214
DS + ++ E E GE KD + +E++ + ++ DDK +SE E+
Sbjct: 177 DSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEF 236
Query: 215 GED-DTNDEDDDEDSNPKKN 233
G D D +DED+DED +++
Sbjct: 237 GLDKDEDDEDEDEDEEEEES 256
Score = 28.9 bits (63), Expect = 6.5
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 199 CLQDIDDKLSESAEDDGE-DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAK 257
CL D + E+ + D + D + E++DE+ +K+ + E E +L +
Sbjct: 164 CLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXEN-----------EDGEEEELDE 212
Query: 258 KLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSD 317
E + E E +E+ E+ ++D ++ DED E + E
Sbjct: 213 ---------EEDEDEDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEESGKGENRK 263
Query: 318 ESSDEGEDG 326
+D+ EDG
Sbjct: 264 RETDDEEDG 272
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 37.4 bits (85), Expect = 0.018
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
N + F L+ ++ ++ +Q+ +SD G K E DEE DE E EDG
Sbjct: 149 NDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDG 205
Score = 32.0 bits (71), Expect = 0.77
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 266 YEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
Y+PE+ EA + ++ + E+ + E + + +ED E E ++E D D+ +D
Sbjct: 168 YDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKD 227
Score = 32.0 bits (71), Expect = 0.77
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 164 DSQGGCELMETVNEPETGEVSKDAVI-------VKQEKNNEYCLQDIDDK--LSESAEDD 214
DS + ++ E E GE KD + +E++ + ++ DDK +SE E+
Sbjct: 177 DSDAQVDGVDKEEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEF 236
Query: 215 GED-DTNDEDDDEDSNPKKN 233
G D D +DED+DED +++
Sbjct: 237 GLDKDEDDEDEDEDEEEEES 256
Score = 28.9 bits (63), Expect = 6.5
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 199 CLQDIDDKLSESAEDDGE-DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAK 257
CL D + E+ + D + D + E++DE+ +K+ + E E +L +
Sbjct: 164 CLDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXEN-----------EDGEEEELDE 212
Query: 258 KLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSD 317
E + E E +E+ E+ ++D ++ DED E + E
Sbjct: 213 ---------EEDEDEDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEESGKGENRK 263
Query: 318 ESSDEGEDG 326
+D+ EDG
Sbjct: 264 RETDDEEDG 272
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 37.4 bits (85), Expect = 0.018
Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 36/171 (21%)
Query: 182 EVSKDAVIVKQEKNNEYCLQDIDDKLSESA----------EDDGEDDTNDEDDDEDSNPK 231
E +++ V V E++ + C Q ++D SE + E+D E++ +E+++ED +
Sbjct: 219 EDAEEVVEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEE 278
Query: 232 KNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYE----------------PENPEAKE 275
+ + E E E E + ++ +I++ PE+P K
Sbjct: 279 EEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPESPSPKP 338
Query: 276 FFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
+++I E+ + ++ DED+ +DE + G G
Sbjct: 339 EYSVIVEV----------RSDDDKDEDTHSRKSTVTDESEMQDMMTRGNLG 379
Score = 34.3 bits (77), Expect = 0.16
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 210 SAEDDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
+A ++GE + +D + + T+ +L + L + E K IL +E E
Sbjct: 205 AASEEGEKGLFIQPEDAEEVVEVTTERSQDLCPQSLEDAASEESSKQKG----ILSHEEE 260
Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
+ E +E + + E+D E +E+ E + E +EE +E +E E+
Sbjct: 261 DEEEEE------------EEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 304
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 37.0 bits (84), Expect = 0.024
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 9/183 (4%)
Query: 148 SEEVRKRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKL 207
SEE + + C+ + E + SK + + N + DD
Sbjct: 467 SEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLN 526
Query: 208 SESAEDDG------EDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQ 261
ES E+ G EDD+ E D++ S + + E L ++ E K+L +
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGS-EKELHE 585
Query: 262 MILIYEPE--NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDES 319
+L E E + E EF E +L E+ E D ++ +++ ++ + ++ SDE
Sbjct: 586 NVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK 645
Query: 320 SDE 322
DE
Sbjct: 646 EDE 648
Score = 32.3 bits (72), Expect = 0.59
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 35/177 (19%)
Query: 163 LDSQGG-CELMETV-------NEPETGEVSKDAV--IVKQEKNNEYCLQDIDDKLSESAE 212
LD +G EL E V N+ E E D ++ +E + +D D+K E E
Sbjct: 574 LDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEK--EEEE 631
Query: 213 DDGE---DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
D E DD +DE +DE+ +K +A + A E +KL + E E
Sbjct: 632 DTYEKVFDDESDEKEDEEYADEKGLEA---------ADKKAEEGDADEKLFEESDDKEDE 682
Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
+ + KE E++ E D N + + + +S E+L D+S + G G
Sbjct: 683 DADGKEVEDADEKLF--------EDDDSN---EKLFDEEEDSSEKLFDDSDERGTLG 728
Score = 31.6 bits (70), Expect = 1.0
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 200 LQDIDDKLSESAEDDGEDDTNDEDD-----DEDSNPKKNTQAPLELMAEFLRAEMAREYQ 254
L++ D + SE EDDG + DE+ DEDS+ K+ + E + + E E
Sbjct: 592 LEENDSENSEF-EDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEY 650
Query: 255 LAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
+K + E ++ F E+ + DED+ G+ ++DE+
Sbjct: 651 ADEKGLEAADKKAEEGDADEKLF---------------EESDDKEDEDADGKEVEDADEK 695
Query: 315 LSDESS------DEGEDGS 327
L ++ DE ED S
Sbjct: 696 LFEDDDSNEKLFDEEEDSS 714
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 37.0 bits (84), Expect = 0.024
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 9/183 (4%)
Query: 148 SEEVRKRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKL 207
SEE + + C+ + E + SK + + N + DD
Sbjct: 467 SEEGCPKRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLN 526
Query: 208 SESAEDDG------EDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQ 261
ES E+ G EDD+ E D++ S + + E L ++ E K+L +
Sbjct: 527 KESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGS-EKELHE 585
Query: 262 MILIYEPE--NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDES 319
+L E E + E EF E +L E+ E D ++ +++ ++ + ++ SDE
Sbjct: 586 NVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK 645
Query: 320 SDE 322
DE
Sbjct: 646 EDE 648
Score = 32.3 bits (72), Expect = 0.59
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 35/177 (19%)
Query: 163 LDSQGG-CELMETV-------NEPETGEVSKDAV--IVKQEKNNEYCLQDIDDKLSESAE 212
LD +G EL E V N+ E E D ++ +E + +D D+K E E
Sbjct: 574 LDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEK--EEEE 631
Query: 213 DDGE---DDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPE 269
D E DD +DE +DE+ +K +A + A E +KL + E E
Sbjct: 632 DTYEKVFDDESDEKEDEEYADEKGLEA---------ADKKAEEGDADEKLFEESDDKEDE 682
Query: 270 NPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGEDG 326
+ + KE E++ E D N + + + +S E+L D+S + G G
Sbjct: 683 DADGKEVEDADEKLF--------EDDDSN---EKLFDEEEDSSEKLFDDSDERGTLG 728
Score = 31.6 bits (70), Expect = 1.0
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 200 LQDIDDKLSESAEDDGEDDTNDEDD-----DEDSNPKKNTQAPLELMAEFLRAEMAREYQ 254
L++ D + SE EDDG + DE+ DEDS+ K+ + E + + E E
Sbjct: 592 LEENDSENSEF-EDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEY 650
Query: 255 LAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEE 314
+K + E ++ F E+ + DED+ G+ ++DE+
Sbjct: 651 ADEKGLEAADKKAEEGDADEKLF---------------EESDDKEDEDADGKEVEDADEK 695
Query: 315 LSDESS------DEGEDGS 327
L ++ DE ED S
Sbjct: 696 LFEDDDSNEKLFDEEEDSS 714
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 37.0 bits (84), Expect = 0.024
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 172 METVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSN 229
M +V++ ET E + K + + D + S++ E DGED +++DDDED +
Sbjct: 1862 MTSVDDTETEEAENLEDLHKAAEKHSMSSISTDHQFSDAEESDGEDGDDNDDDDEDED 1919
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 37.0 bits (84), Expect = 0.024
Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 123 ARGRREGRMRATGV-RLAC-GTLLPQWSEEVRKRLSLQARCT--LDSQGGCELMETVNEP 178
AR R G+ + + RL GT+ + E +K++ L +D+ G L
Sbjct: 899 ARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRS 958
Query: 179 ETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPL 238
+ +K+ + + E ++++ + SE E D ++ + E+ + +T A
Sbjct: 959 NSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETREN---EVSTSATD 1015
Query: 239 ELMAEFLRAEMAR-------EYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQN 291
EL+++F A A E + K ++I + + E +E +EE+ ++ + ++
Sbjct: 1016 ELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRS 1075
Query: 292 HEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
+ + +D DS ESK ++ + ES E D
Sbjct: 1076 STKKAQTNDSDSDTESKRQAQRSSASESETEDSD 1109
Score = 29.3 bits (64), Expect = 5.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 216 EDDTNDEDDDEDSNPKKNTQ 235
+ D++DEDDD+D PK+ T+
Sbjct: 204 KQDSSDEDDDDDEAPKRQTR 223
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 36.6 bits (83), Expect = 0.031
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 21/173 (12%)
Query: 153 KRLSLQARCTLDSQGGCELMETVNEPETGEVSKDAVIVKQEKNNEYCLQDIDDKLSESAE 212
K+ ++ A + + E E NE E GE K+ K EK E D K ++
Sbjct: 115 KKEAVAAEVKNEEEDQKEDEEDQNE-EKGEAGKED---KDEKGEE------DGKEDKNGN 164
Query: 213 DDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPE 272
+ GED ED + + K N + E + E +E K EN +
Sbjct: 165 EKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGK-----------ENED 213
Query: 273 AKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDEGED 325
KE E + K E++ DE + E G+ E+L +E + ED
Sbjct: 214 GKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEED 266
Score = 32.0 bits (71), Expect = 0.77
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 122 AARGRREGRMRATGVRLACGTLLPQWSEEVRKRLSLQARCTLDSQGGCELMETVNEPETG 181
A +G + RL+ L+P E KR S + S E ++T +
Sbjct: 7 AGQGDMRQEPKRRSARLSA-MLVPVTPEVKPKRTSSSRKMKTKSDMMEENIDT-SAQAVA 64
Query: 182 EVSKDAVIVKQEKNNEYCLQDIDDKLSESAEDDGEDDTNDEDDDEDSNPKKNTQAPLELM 241
E ++AV+ + N ++ + K++E+ + E E++ ED+ K +
Sbjct: 65 ETKQEAVVEEDYNENA---KNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKK----- 116
Query: 242 AEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDE 301
E + AE+ E + K E E + +E +E +K + E+DG+ E
Sbjct: 117 -EAVAAEVKNEEEDQK---------EDEEDQNEEKGEAGKE----DKDEKGEEDGK---E 159
Query: 302 DSSGESKGESDEELSDESSDEGEDG 326
D +G KGE +E E +GEDG
Sbjct: 160 DKNGNEKGEDAKE--KEDGKKGEDG 182
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 36.6 bits (83), Expect = 0.031
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 191 KQEKNNEYCLQDIDDKLSESAE--DDGEDDTNDEDDDEDSNPKKNTQAPLELMAEFLRAE 248
++E +++ + SES E + GE+ ++ED EDS+ ++++++ E E R
Sbjct: 681 EEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTA 740
Query: 249 MAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESK 308
K + E EN ++K T + D +S EDSS +S+
Sbjct: 741 KRNSKAKGKSDSED---GEKENEKSK--------------TSDSSNDESSSIEDSSSDSE 783
Query: 309 GESDEELSDES 319
ES+ E ES
Sbjct: 784 SESEPESESES 794
Score = 32.7 bits (73), Expect = 0.45
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Query: 248 EMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGES 307
E+A+E+ A K Q EN AK+F++ EE E+D +S DS ES
Sbjct: 655 ELAKEWTPAGKAKQ-------EN-SAKKFYSESEE----------EEDSSDSSSDSESES 696
Query: 308 KGESDEE-LSDESSDEGEDGS 327
ES E+ S E D ED S
Sbjct: 697 GSESGEQGESGEEGDSNEDSS 717
Score = 28.5 bits (62), Expect = 8.5
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 229 NPKKNTQAPLELMAEFLRAEMAREYQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEK 288
+P +EL E+ A A++ AKK E E E + E +
Sbjct: 645 DPSVRNVEVIELAKEWTPAGKAKQENSAKKFYS-----ESEEEEDSSDSSSDSESESGSE 699
Query: 289 TQNHEQDGENSD--EDSSGESKGESDEELSDESSDEGE 324
+ + GE D EDSS +S E D E ES E +
Sbjct: 700 SGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENK 737
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,677,174
Number of Sequences: 37866
Number of extensions: 780992
Number of successful extensions: 9782
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 6265
Number of HSP's gapped (non-prelim): 2493
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.