Guide to the Human Genome
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Search of human proteins with 239747760

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo
sapiens]
         (110 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753186 PREDICTED: hypothetical protein [Homo sapiens]           222   6e-59
gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo ...   222   6e-59
gi|239741626 PREDICTED: hypothetical protein XP_002342265 [Homo ...   222   6e-59
gi|15559211 RE1-silencing transcription factor [Homo sapiens]          30   0.32 
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]       29   0.93 
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]       29   0.93 
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]        29   0.93 
gi|118600963 Nik related kinase [Homo sapiens]                         28   1.6  
gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens]                28   2.1  
gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens]                 28   2.1  
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa...    28   2.1  
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ...    28   2.1  
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ...    28   2.1  
gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo sapiens]     28   2.1  
gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens]       28   2.1  
gi|238550198 synaptotagmin III [Homo sapiens]                          27   2.7  
gi|238550196 synaptotagmin III [Homo sapiens]                          27   2.7  
gi|14150054 synaptotagmin III [Homo sapiens]                           27   2.7  
gi|4507445 transcription factor AP-2 gamma [Homo sapiens]              27   2.7  
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]        27   2.7  
gi|31542667 transmembrane protein 40 [Homo sapiens]                    27   2.7  
gi|154426272 hypothetical protein LOC54540 [Homo sapiens]              27   3.5  
gi|25777643 potassium intermediate/small conductance calcium-act...    27   3.5  
gi|14042933 transmembrane protein 133 [Homo sapiens]                   27   3.5  
gi|118600961 akt substrate AS250 [Homo sapiens]                        27   3.5  
gi|51093861 caspase recruitment domain protein 10 [Homo sapiens]       27   4.6  
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]       27   4.6  
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)...    27   4.6  
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)...    27   4.6  
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)...    27   4.6  

>gi|239753186 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score =  222 bits (565), Expect = 6e-59
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
           MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL
Sbjct: 1   MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60

Query: 61  LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
           LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC
Sbjct: 61  LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110


>gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo
           sapiens]
          Length = 110

 Score =  222 bits (565), Expect = 6e-59
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
           MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL
Sbjct: 1   MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60

Query: 61  LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
           LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC
Sbjct: 61  LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110


>gi|239741626 PREDICTED: hypothetical protein XP_002342265 [Homo
           sapiens]
          Length = 110

 Score =  222 bits (565), Expect = 6e-59
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
           MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL
Sbjct: 1   MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60

Query: 61  LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
           LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC
Sbjct: 61  LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110


>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
          Length = 1097

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 3   ERAESKNKAGS---PQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHG 59
           ++ ESK+K  S   P+G  KV ENK+ +   K S ++ ++  +    SS  P    +  G
Sbjct: 545 KKVESKSKNNSQEVPKGDSKVEENKKQNTCMKKSTKKKTLKNKSSKKSSKPPQKEPVEKG 604


>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
          Length = 1471

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1   MFERAESKN--KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLA 57
           M + A  KN     S  G R    +  SS+AP +SRR V +G   +  SS L S  + A
Sbjct: 232 MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTLGSKSSAA 290


>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
          Length = 1479

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1   MFERAESKN--KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLA 57
           M + A  KN     S  G R    +  SS+AP +SRR V +G   +  SS L S  + A
Sbjct: 232 MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTLGSKSSAA 290


>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
          Length = 1538

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1   MFERAESKN--KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLA 57
           M + A  KN     S  G R    +  SS+AP +SRR V +G   +  SS L S  + A
Sbjct: 232 MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTLGSKSSAA 290


>gi|118600963 Nik related kinase [Homo sapiens]
          Length = 1582

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 15  QGQRKVPENKQSSEAPKASRRRVSIGKQE 43
           QGQ +VPE ++  +AP+  +R   + +QE
Sbjct: 521 QGQDQVPEQQRQGQAPEQQQRHNQVPEQE 549


>gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens]
          Length = 640

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 18 RKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTL 56
          ++ P   +  +  KA  ++   G Q+ P  + LPSGH L
Sbjct: 59 KETPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPL 97


>gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens]
          Length = 640

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 18 RKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTL 56
          ++ P   +  +  KA  ++   G Q+ P  + LPSGH L
Sbjct: 59 KETPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPL 97


>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
           sapiens]
          Length = 1336

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 8   KNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGLLAHPLIG 67
           +  +G+PQG+   PE   S  +P  S   V++    +PL   +P  H  A  +   P+  
Sbjct: 238 RQASGAPQGEA-APETDSSPPSPSVSSEEVAVAAAPEPL---IPF-HQWALRIPQDPIDD 292

Query: 68  GVTGHVIP 75
            + G V+P
Sbjct: 293 AMGGPVMP 300


>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
           [Homo sapiens]
          Length = 916

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 6   ESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQP 45
           E+K+KA   +G++K  E K+  EAPK  +      K+E+P
Sbjct: 689 EAKSKAEVGKGEQKEEEEKEVKEAPKEEKVE---KKEEKP 725


>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
           [Homo sapiens]
          Length = 540

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 6   ESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQP 45
           E+K+KA   +G++K  E K+  EAPK  +      K+E+P
Sbjct: 313 EAKSKAEVGKGEQKEEEEKEVKEAPKEEKVE---KKEEKP 349


>gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo
          sapiens]
          Length = 263

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 53 GHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVFSLP--ILVPPVVRL 96
          G T A     HPL+G V  H     L+ +T  SLP  + VPP V +
Sbjct: 19 GDTEAQQTTLHPLVGRVFVHT----LDHETFLSLPEHVAVPPAVHI 60


>gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens]
          Length = 387

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 53 GHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVFSLP--ILVPPVVRL 96
          G T A     HPL+G V  H     L+ +T  SLP  + VPP V +
Sbjct: 19 GDTEAQQTTLHPLVGRVFVHT----LDHETFLSLPEHVAVPPAVHI 60


>gi|238550198 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 53  GHTLAHGLLAHPLIGGVTGH 72
           GH LA GL  HPL+GG   H
Sbjct: 114 GHHLAAGLGGHPLLGGPHHH 133


>gi|238550196 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 53  GHTLAHGLLAHPLIGGVTGH 72
           GH LA GL  HPL+GG   H
Sbjct: 114 GHHLAAGLGGHPLLGGPHHH 133


>gi|14150054 synaptotagmin III [Homo sapiens]
          Length = 590

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 53  GHTLAHGLLAHPLIGGVTGH 72
           GH LA GL  HPL+GG   H
Sbjct: 114 GHHLAAGLGGHPLLGGPHHH 133


>gi|4507445 transcription factor AP-2 gamma [Homo sapiens]
          Length = 450

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 23  NKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGLLAH 63
           N     AP  S+++   G+Q Q   +GLPS H    GLL H
Sbjct: 88  NPLHQPAPTGSQQQAWPGRQSQE-GAGLPSHHGRPAGLLPH 127


>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
          Length = 3996

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 6/35 (17%)

Query: 71  GHVIPLLL------NLDTVFSLPILVPPVVRLILF 99
           GH++P+LL      NL T+     L+P +V+L+L+
Sbjct: 540 GHLLPVLLTSLMHPNLQTLIMADALMPQLVQLVLY 574


>gi|31542667 transmembrane protein 40 [Homo sapiens]
          Length = 233

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 2  FERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGH 54
          +ER +S + + S         +  SSE+    ++  + GK  + L +G P G+
Sbjct: 45 YERNKSSSSSSSSSSSSSSSSSSSSSESNDEDQQPRATGKHRRSLGAGYPHGN 97


>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
          Length = 789

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 7   SKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTL 56
           SK  A  P+ Q   P N   S     S ++  I     PL+ G P  HTL
Sbjct: 470 SKEGAAEPEPQSLPPSNLSGS-----SEQQPDINLDLSPLTLGSPQNHTL 514


>gi|25777643 potassium intermediate/small conductance
          calcium-activated channel, subfamily N, member 1 [Homo
          sapiens]
          Length = 543

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 12/49 (24%)

Query: 12 GSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPS--GHTLAH 58
          GSP+GQ +  ++ +  E  +A R+R          +SG PS  GH L H
Sbjct: 57 GSPRGQPQDQDDDEDDEEDEAGRQR----------ASGKPSNVGHRLGH 95


>gi|14042933 transmembrane protein 133 [Homo sapiens]
          Length = 129

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 45 PLSSGLPSGHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLI 97
          PL+ G P G+TL     ++P +  +   +  LL N D+   L IL P  + LI
Sbjct: 33 PLTKGFPLGYTLLFNFASYPFL--LPSKIKTLLRNKDSF--LNILCPACLLLI 81


>gi|118600961 akt substrate AS250 [Homo sapiens]
          Length = 1873

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 15  QGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPS 52
           Q   +V E +QS  AP A    +++G+Q+Q L S   S
Sbjct: 731 QKATEVEECQQSENAPAAGSGHLTVGQQQQVLRSSSTS 768


>gi|51093861 caspase recruitment domain protein 10 [Homo sapiens]
          Length = 1032

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 3   ERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGLLA 62
           E+ + K K   P     V E +  ++   AS R +  G Q++    G P    +   +L 
Sbjct: 263 EKEKEKEKEKEPDNVDLVSELRAENQRLTASLRELQEGLQQEASRPGAPGSERILLDILE 322

Query: 63  H 63
           H
Sbjct: 323 H 323


>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
          Length = 1843

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 10   KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGH-TLAHGL-LAHPL 65
            KAG+ Q   + P        P A R+   + ++EQ L  GLP G  T+  G+  AHP+
Sbjct: 1095 KAGATQSNIR-PGGGSDPRIPAAPRK---VSREEQALPRGLPGGWVTIQDGIYTAHPV 1148


>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
            [Homo sapiens]
          Length = 2004

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 5    AESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLP 51
            A   + + SP+ + K PE ++  E P+ S  +    +++Q L    P
Sbjct: 1252 ASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEP 1298


>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
            [Homo sapiens]
          Length = 2004

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 5    AESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLP 51
            A   + + SP+ + K PE ++  E P+ S  +    +++Q L    P
Sbjct: 1252 ASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEP 1298


>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
            [Homo sapiens]
          Length = 2004

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 5    AESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLP 51
            A   + + SP+ + K PE ++  E P+ S  +    +++Q L    P
Sbjct: 1252 ASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEP 1298


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,726,102
Number of Sequences: 37866
Number of extensions: 216365
Number of successful extensions: 838
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 55
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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