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Search of human proteins with 239747760
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo
sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753186 PREDICTED: hypothetical protein [Homo sapiens] 222 6e-59
gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo ... 222 6e-59
gi|239741626 PREDICTED: hypothetical protein XP_002342265 [Homo ... 222 6e-59
gi|15559211 RE1-silencing transcription factor [Homo sapiens] 30 0.32
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens] 29 0.93
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens] 29 0.93
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens] 29 0.93
gi|118600963 Nik related kinase [Homo sapiens] 28 1.6
gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens] 28 2.1
gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens] 28 2.1
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 28 2.1
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 28 2.1
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 28 2.1
gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo sapiens] 28 2.1
gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens] 28 2.1
gi|238550198 synaptotagmin III [Homo sapiens] 27 2.7
gi|238550196 synaptotagmin III [Homo sapiens] 27 2.7
gi|14150054 synaptotagmin III [Homo sapiens] 27 2.7
gi|4507445 transcription factor AP-2 gamma [Homo sapiens] 27 2.7
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 27 2.7
gi|31542667 transmembrane protein 40 [Homo sapiens] 27 2.7
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 27 3.5
gi|25777643 potassium intermediate/small conductance calcium-act... 27 3.5
gi|14042933 transmembrane protein 133 [Homo sapiens] 27 3.5
gi|118600961 akt substrate AS250 [Homo sapiens] 27 3.5
gi|51093861 caspase recruitment domain protein 10 [Homo sapiens] 27 4.6
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 27 4.6
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 27 4.6
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 27 4.6
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 27 4.6
>gi|239753186 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 222 bits (565), Expect = 6e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL
Sbjct: 1 MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
Query: 61 LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC
Sbjct: 61 LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
>gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo
sapiens]
Length = 110
Score = 222 bits (565), Expect = 6e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL
Sbjct: 1 MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
Query: 61 LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC
Sbjct: 61 LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
>gi|239741626 PREDICTED: hypothetical protein XP_002342265 [Homo
sapiens]
Length = 110
Score = 222 bits (565), Expect = 6e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL
Sbjct: 1 MFERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGL 60
Query: 61 LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC
Sbjct: 61 LAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLILFPKPEDNRALYC 110
>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
Length = 1097
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 3 ERAESKNKAGS---PQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHG 59
++ ESK+K S P+G KV ENK+ + K S ++ ++ + SS P + G
Sbjct: 545 KKVESKSKNNSQEVPKGDSKVEENKKQNTCMKKSTKKKTLKNKSSKKSSKPPQKEPVEKG 604
>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
Length = 1471
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 1 MFERAESKN--KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLA 57
M + A KN S G R + SS+AP +SRR V +G + SS L S + A
Sbjct: 232 MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTLGSKSSAA 290
>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
Length = 1479
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 1 MFERAESKN--KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLA 57
M + A KN S G R + SS+AP +SRR V +G + SS L S + A
Sbjct: 232 MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTLGSKSSAA 290
>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
Length = 1538
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 1 MFERAESKN--KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLA 57
M + A KN S G R + SS+AP +SRR V +G + SS L S + A
Sbjct: 232 MIQSANDKNFDDEDSVDGNRPSSASSTSSKAPPSSRRNVGMGTTRRLGSSTLGSKSSAA 290
>gi|118600963 Nik related kinase [Homo sapiens]
Length = 1582
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 15 QGQRKVPENKQSSEAPKASRRRVSIGKQE 43
QGQ +VPE ++ +AP+ +R + +QE
Sbjct: 521 QGQDQVPEQQRQGQAPEQQQRHNQVPEQE 549
>gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 18 RKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTL 56
++ P + + KA ++ G Q+ P + LPSGH L
Sbjct: 59 KETPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPL 97
>gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 18 RKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTL 56
++ P + + KA ++ G Q+ P + LPSGH L
Sbjct: 59 KETPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPL 97
>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
sapiens]
Length = 1336
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 8 KNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGLLAHPLIG 67
+ +G+PQG+ PE S +P S V++ +PL +P H A + P+
Sbjct: 238 RQASGAPQGEA-APETDSSPPSPSVSSEEVAVAAAPEPL---IPF-HQWALRIPQDPIDD 292
Query: 68 GVTGHVIP 75
+ G V+P
Sbjct: 293 AMGGPVMP 300
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 6 ESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQP 45
E+K+KA +G++K E K+ EAPK + K+E+P
Sbjct: 689 EAKSKAEVGKGEQKEEEEKEVKEAPKEEKVE---KKEEKP 725
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 6 ESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQP 45
E+K+KA +G++K E K+ EAPK + K+E+P
Sbjct: 313 EAKSKAEVGKGEQKEEEEKEVKEAPKEEKVE---KKEEKP 349
>gi|208973226 sarcoglycan, alpha isoform 2 precursor [Homo
sapiens]
Length = 263
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 53 GHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVFSLP--ILVPPVVRL 96
G T A HPL+G V H L+ +T SLP + VPP V +
Sbjct: 19 GDTEAQQTTLHPLVGRVFVHT----LDHETFLSLPEHVAVPPAVHI 60
>gi|4506911 sarcoglycan, alpha isoform 1 precursor [Homo sapiens]
Length = 387
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 53 GHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVFSLP--ILVPPVVRL 96
G T A HPL+G V H L+ +T SLP + VPP V +
Sbjct: 19 GDTEAQQTTLHPLVGRVFVHT----LDHETFLSLPEHVAVPPAVHI 60
>gi|238550198 synaptotagmin III [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 53 GHTLAHGLLAHPLIGGVTGH 72
GH LA GL HPL+GG H
Sbjct: 114 GHHLAAGLGGHPLLGGPHHH 133
>gi|238550196 synaptotagmin III [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 53 GHTLAHGLLAHPLIGGVTGH 72
GH LA GL HPL+GG H
Sbjct: 114 GHHLAAGLGGHPLLGGPHHH 133
>gi|14150054 synaptotagmin III [Homo sapiens]
Length = 590
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 53 GHTLAHGLLAHPLIGGVTGH 72
GH LA GL HPL+GG H
Sbjct: 114 GHHLAAGLGGHPLLGGPHHH 133
>gi|4507445 transcription factor AP-2 gamma [Homo sapiens]
Length = 450
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 NKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGLLAH 63
N AP S+++ G+Q Q +GLPS H GLL H
Sbjct: 88 NPLHQPAPTGSQQQAWPGRQSQE-GAGLPSHHGRPAGLLPH 127
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 71 GHVIPLLL------NLDTVFSLPILVPPVVRLILF 99
GH++P+LL NL T+ L+P +V+L+L+
Sbjct: 540 GHLLPVLLTSLMHPNLQTLIMADALMPQLVQLVLY 574
>gi|31542667 transmembrane protein 40 [Homo sapiens]
Length = 233
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 2 FERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGH 54
+ER +S + + S + SSE+ ++ + GK + L +G P G+
Sbjct: 45 YERNKSSSSSSSSSSSSSSSSSSSSSESNDEDQQPRATGKHRRSLGAGYPHGN 97
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 7 SKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTL 56
SK A P+ Q P N S S ++ I PL+ G P HTL
Sbjct: 470 SKEGAAEPEPQSLPPSNLSGS-----SEQQPDINLDLSPLTLGSPQNHTL 514
>gi|25777643 potassium intermediate/small conductance
calcium-activated channel, subfamily N, member 1 [Homo
sapiens]
Length = 543
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
Query: 12 GSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPS--GHTLAH 58
GSP+GQ + ++ + E +A R+R +SG PS GH L H
Sbjct: 57 GSPRGQPQDQDDDEDDEEDEAGRQR----------ASGKPSNVGHRLGH 95
>gi|14042933 transmembrane protein 133 [Homo sapiens]
Length = 129
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 45 PLSSGLPSGHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVFSLPILVPPVVRLI 97
PL+ G P G+TL ++P + + + LL N D+ L IL P + LI
Sbjct: 33 PLTKGFPLGYTLLFNFASYPFL--LPSKIKTLLRNKDSF--LNILCPACLLLI 81
>gi|118600961 akt substrate AS250 [Homo sapiens]
Length = 1873
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 15 QGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPS 52
Q +V E +QS AP A +++G+Q+Q L S S
Sbjct: 731 QKATEVEECQQSENAPAAGSGHLTVGQQQQVLRSSSTS 768
>gi|51093861 caspase recruitment domain protein 10 [Homo sapiens]
Length = 1032
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 3 ERAESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGHTLAHGLLA 62
E+ + K K P V E + ++ AS R + G Q++ G P + +L
Sbjct: 263 EKEKEKEKEKEPDNVDLVSELRAENQRLTASLRELQEGLQQEASRPGAPGSERILLDILE 322
Query: 63 H 63
H
Sbjct: 323 H 323
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 10 KAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLPSGH-TLAHGL-LAHPL 65
KAG+ Q + P P A R+ + ++EQ L GLP G T+ G+ AHP+
Sbjct: 1095 KAGATQSNIR-PGGGSDPRIPAAPRK---VSREEQALPRGLPGGWVTIQDGIYTAHPV 1148
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 5 AESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLP 51
A + + SP+ + K PE ++ E P+ S + +++Q L P
Sbjct: 1252 ASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEP 1298
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 5 AESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLP 51
A + + SP+ + K PE ++ E P+ S + +++Q L P
Sbjct: 1252 ASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEP 1298
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 5 AESKNKAGSPQGQRKVPENKQSSEAPKASRRRVSIGKQEQPLSSGLP 51
A + + SP+ + K PE ++ E P+ S + +++Q L P
Sbjct: 1252 ASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEP 1298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,726,102
Number of Sequences: 37866
Number of extensions: 216365
Number of successful extensions: 838
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 55
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.