Guide to the Human Genome
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Name: LOC100291448 Sequence: fasta or formatted (110aa) NCBI GI: 239747760
Description:

PREDICTED: hypothetical protein XP_002348241

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          7           1
 C cysteine            0.9          1           1
 D aspartate           1.8          2           1
 E glutamate           5.5          6           1
 F phenylalanine       2.7          3           1
 G glycine             8.2          9           2
 H histidine           3.6          4           1
 I isoleucine          4.5          5           1
 K lysine              6.4          7           1
 L leucine            13.6         15           3
 M methionine          0.9          1           1
 N asparagine          3.6          4           1
 P proline            10.9         12           2
 Q glutamine           4.5          5           1
 R arginine            6.4          7           3
 S serine              9.1         10           2
 T threonine           2.7          3           1
 V valine              7.3          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348241 
LOC100293633          1.000   PREDICTED: hypothetical protein 
LOC100289458          1.000   PREDICTED: hypothetical protein XP_002342265 
REST                  0.025   RE1-silencing transcription factor 
CLASP1                0.020   CLIP-associating protein 1 isoform 3 
CLASP1                0.020   CLIP-associating protein 1 isoform 2 
CLASP1                0.020   CLIP-associating protein 1 isoform 1 
NRK                   0.015   Nik related kinase 
ALAS1                 0.015   5-aminolevulinate synthase 1 
ALAS1                 0.015   5-aminolevulinate synthase 1 
SH3TC1                0.015   SH3 domain and tetratricopeptide repeats 1 
NEFM                  0.015   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.015   neurofilament, medium polypeptide 150kDa isoform 2 ...
SGCA                  0.015   sarcoglycan, alpha isoform 2 precursor 
SGCA                  0.015   sarcoglycan, alpha isoform 1 precursor 
SYT3                  0.010   synaptotagmin III 
SYT3                  0.010   synaptotagmin III 
SYT3                  0.010   synaptotagmin III 
TFAP2C                0.010   transcription factor AP-2 gamma 
C12orf51              0.010   chromosome 12 open reading frame 51 
TMEM40                0.010   transmembrane protein 40 
FLJ10404              0.010   hypothetical protein LOC54540 
KCNN1                 0.010   potassium intermediate/small conductance calcium-act...
TMEM133               0.010   transmembrane protein 133 
C20orf74              0.010   akt substrate AS250 
CARD10                0.010   caspase recruitment domain protein 10 
XIRP1                 0.010   xin actin-binding repeat containing 1 
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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