Guide to the Human Genome
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Search of human proteins with 239747754

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]           285   9e-78
gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo ...   285   9e-78
gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo ...   285   9e-78
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       45   2e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       45   2e-05
gi|122937321 UNC homeobox [Homo sapiens]                               44   4e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap...    41   3e-04
gi|188536004 zinc finger protein 469 [Homo sapiens]                    40   5e-04
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    40   7e-04
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi...    39   9e-04
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap...    39   9e-04
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi...    39   9e-04
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi...    39   9e-04
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi...    39   9e-04
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi...    39   9e-04
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi...    39   9e-04
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi...    39   9e-04
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]                 39   0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  39   0.002
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                39   0.002
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    38   0.002
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    38   0.002
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          38   0.002
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          38   0.002
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          38   0.002
gi|239754450 PREDICTED: hypothetical protein [Homo sapiens]            38   0.003
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ...    38   0.003
gi|239748999 PREDICTED: hypothetical protein [Homo sapiens]            38   0.003
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ...    38   0.003
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]            38   0.003

>gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score =  285 bits (728), Expect = 9e-78
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
           MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT
Sbjct: 1   MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60

Query: 61  CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
           CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC
Sbjct: 61  CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120

Query: 121 APPASPGALS 130
           APPASPGALS
Sbjct: 121 APPASPGALS 130


>gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
           sapiens]
          Length = 130

 Score =  285 bits (728), Expect = 9e-78
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
           MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT
Sbjct: 1   MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60

Query: 61  CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
           CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC
Sbjct: 61  CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120

Query: 121 APPASPGALS 130
           APPASPGALS
Sbjct: 121 APPASPGALS 130


>gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo
           sapiens]
          Length = 130

 Score =  285 bits (728), Expect = 9e-78
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
           MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT
Sbjct: 1   MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60

Query: 61  CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
           CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC
Sbjct: 61  CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120

Query: 121 APPASPGALS 130
           APPASPGALS
Sbjct: 121 APPASPGALS 130


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 43/134 (32%), Positives = 51/134 (38%), Gaps = 36/134 (26%)

Query: 16  QRPRNSGGRP-PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           QRP   GG P PGP  QR G P   R PP           H+S G   PA SP  + LP 
Sbjct: 459 QRPPPQGGPPQPGPGPQRQGPPLQQRPPPQ-------GQQHLS-GLGPPAGSPLPQRLPS 510

Query: 75  PS----------------RPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSA----- 113
           P+                + RQ   +AG        A  P ++P P R+ GP  A     
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP--PAARPPASPSPQRQAGPPQATRQTS 568

Query: 114 ----LPPYLPCAPP 123
                PP    APP
Sbjct: 569 VSGPAPPKASGAPP 582



 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 32/110 (29%)

Query: 19  RNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRP 78
           R +  +P GP +Q+  RP P   PP   PG                  P+ +  P+  RP
Sbjct: 446 RQTSQQPAGPPAQQ--RPPPQGGPPQPGPG------------------PQRQGPPLQQRP 485

Query: 79  --RQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
             + + HL+G         G P+ +PLP R P P SA  P  P +  A P
Sbjct: 486 PPQGQQHLSG--------LGPPAGSPLPQRLPSPTSA--PQQPASQAAPP 525



 Score = 30.8 bits (68), Expect = 0.32
 Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 15  PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           P  P+ SG  P G   QR G       PP + PG        S     P + P     P 
Sbjct: 572 PAPPKASGAPPGG--QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPR 622

Query: 75  PSRP----RQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
           PS P    R K  LA   S D+      ++   PH +     +L        PA P
Sbjct: 623 PSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPP 678



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 32/120 (26%)

Query: 9   RMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPR 68
           R   +S   P  + G PPG   QR G       PP + PG        S     P + P 
Sbjct: 565 RQTSVSGPAPPKASGAPPGG-QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPP 616

Query: 69  ERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGA 128
               P PS P                         P  RP P  A  P     PPA+  A
Sbjct: 617 TTQQPRPSGPG------------------------PAGRPKPQLAQKPSQDVPPPATAAA 652


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 43/134 (32%), Positives = 51/134 (38%), Gaps = 36/134 (26%)

Query: 16  QRPRNSGGRP-PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           QRP   GG P PGP  QR G P   R PP           H+S G   PA SP  + LP 
Sbjct: 459 QRPPPQGGPPQPGPGPQRQGPPLQQRPPPQ-------GQQHLS-GLGPPAGSPLPQRLPS 510

Query: 75  PS----------------RPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSA----- 113
           P+                + RQ   +AG        A  P ++P P R+ GP  A     
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP--PAARPPASPSPQRQAGPPQATRQTS 568

Query: 114 ----LPPYLPCAPP 123
                PP    APP
Sbjct: 569 VSGPAPPKASGAPP 582



 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 32/110 (29%)

Query: 19  RNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRP 78
           R +  +P GP +Q+  RP P   PP   PG                  P+ +  P+  RP
Sbjct: 446 RQTSQQPAGPPAQQ--RPPPQGGPPQPGPG------------------PQRQGPPLQQRP 485

Query: 79  --RQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
             + + HL+G         G P+ +PLP R P P SA  P  P +  A P
Sbjct: 486 PPQGQQHLSG--------LGPPAGSPLPQRLPSPTSA--PQQPASQAAPP 525



 Score = 32.0 bits (71), Expect = 0.14
 Identities = 34/110 (30%), Positives = 40/110 (36%), Gaps = 21/110 (19%)

Query: 15  PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           P  P+ SG  P G   QR G       PP + PG        S     P + P     P 
Sbjct: 572 PAPPKASGAPPGG--QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPR 622

Query: 75  PSRP----RQKHHLAGSRSLDM-----LSAGNPSSTPLPHRRPGPCSALP 115
           PS P    R K  LA   S D+      +AG P   P P  +  P  A P
Sbjct: 623 PSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGP---PHPQLKASPAQAQP 669



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 32/120 (26%)

Query: 9   RMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPR 68
           R   +S   P  + G PPG   QR G       PP + PG        S     P + P 
Sbjct: 565 RQTSVSGPAPPKASGAPPGG-QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPP 616

Query: 69  ERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGA 128
               P PS P                         P  RP P  A  P     PPA+  A
Sbjct: 617 TTQQPRPSGPG------------------------PAGRPKPQLAQKPSQDVPPPATAAA 652


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 40/137 (29%), Positives = 53/137 (38%), Gaps = 36/137 (26%)

Query: 13  ISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERS- 71
           +SP+ P        GP +  SG      +PPG  P         +PGTC PA  P +RS 
Sbjct: 242 LSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPP---------APGTCDPAFYPSQRSG 292

Query: 72  ---LPVPSRPRQKHHL-----AGSRSLDMLSAGNPSSTPL---------PHRRPGPCSA- 113
               P P RP  K        A   +++  +AG P ++P          P RR    +A 
Sbjct: 293 AGPQPRPGRPADKDAASCGPGAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAA 352

Query: 114 --------LPPYLPCAP 122
                     P LPCAP
Sbjct: 353 AAAAAGLDFAPGLPCAP 369



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 25  PPGPCSQRSGRPTPGRSPPGRLPGWVCS----DTHISPGTCFPASSPRERSLPVPSRPRQ 80
           PP P +Q S     G   PG  P    +    D   SPG   PA +P  R L   +    
Sbjct: 416 PPAPPAQASFGAFSG---PGGAPDSAFARRSPDAVASPGAPAPAPAPF-RDLASAAATEG 471

Query: 81  KHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP--CAPPASPGA 128
                G    D  +AG     P P  RPGP    P   P  C  P  PGA
Sbjct: 472 ----GGGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVP-EPGA 516


>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
           sapiens]
          Length = 505

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 15  PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           P  P + GG PP P    +  P P   PP R  G        +P    P   P   S+ V
Sbjct: 278 PPPPPSRGGPPPPPPPPHNSGPPP---PPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAV 334

Query: 75  PSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
           P  P  + +     +L   +   P   P      GP +  PP  P  PP  P
Sbjct: 335 PPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPP 386


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 26   PGPCSQRSGRPTPGR-----SPPGRLPGWVCSDTHISPG-TCFPASSPRERSLPVPSR-- 77
            PGP SQ SG P PG      S P    G + S+T  +P    FP+ SP    LP  ++  
Sbjct: 3700 PGPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAK 3759

Query: 78   -----PRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSA-------LPPYLPCAPPAS 125
                 PR+        SL     G  S+     + PGP  +         P  P  PP +
Sbjct: 3760 SCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRT 3819

Query: 126  P 126
            P
Sbjct: 3820 P 3820



 Score = 30.4 bits (67), Expect = 0.41
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 4    QTTSGRMEHISPQRPRNSG-------GRPPGPCSQRSGRPTPGRSPPGRLP 47
            + T G  E   PQ+PR +        G P  P      RP PGRSP  R P
Sbjct: 1097 ELTQGPRED-EPQKPRKAARQEAGGDGAPANPEEPGGSRPGPGRSPQARGP 1146



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 31/124 (25%), Positives = 36/124 (29%), Gaps = 35/124 (28%)

Query: 14  SPQRPRNSGGRPPGPCS-----------QRSGRPTPGRSPPGRLPGWVCSDTHISPGTCF 62
           SP  P +   + PGP             Q +G P P   PP  LP      TH  P    
Sbjct: 614 SPANPSSEESQLPGPLGPSAFFHPPTHPQETGSPFPSPEPPHSLP------THYQPE--- 664

Query: 63  PASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAP 122
                     P  + P     L    +   L       TP PH  P          P AP
Sbjct: 665 ----------PAKAFPFPADGLGAEGAFQCL-----EETPFPHEGPEVGRGGLQGFPRAP 709

Query: 123 PASP 126
           P  P
Sbjct: 710 PPYP 713


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 36/120 (30%), Positives = 42/120 (35%), Gaps = 20/120 (16%)

Query: 13  ISPQRPRNSGG----RPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTC---FPAS 65
           +SP  P   G      PP PC+     P P  +PP   P  V SD  + P       P  
Sbjct: 201 VSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPI 260

Query: 66  SPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPAS 125
            P    LP    P  K   A        S    +  P     P P   LPPY  C+P AS
Sbjct: 261 PPPLPLLPPCGYPGLKAEPA--------SPAQDAQEP-----PAPPPPLPPYASCSPRAS 307



 Score = 30.0 bits (66), Expect = 0.54
 Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 29/125 (23%)

Query: 24  RPPGPCSQRSGRPTPG---RSPPGRLPGWVCSDTHISPGTCFPASSPR----------ER 70
           RP G      G+   G   R+P  RLP    S      G   P +SPR           R
Sbjct: 110 RPAGQRDVAGGKTGQGPGSRAPSPRLPNKTIS------GPLIPPASPRLGNTSEAHGAAR 163

Query: 71  SLP----VPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCS-----ALPPYLPCA 121
           + P    VP+ P              L + +P  TPL    PGP +      + P +PCA
Sbjct: 164 TAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSP-PGPLTKGNLPVVAPPVPCA 222

Query: 122 PPASP 126
           PP  P
Sbjct: 223 PPPPP 227


>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
          Length = 1955

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1749 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1798

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1799 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1837



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1691 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1749

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1750 PPPISPPSPPPA 1761


>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
          Length = 1932

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1726 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1775

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1776 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1814



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1668 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1726

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1727 PPPISPPSPPPA 1738


>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
          Length = 1935

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1729 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1778

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1779 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1817



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1671 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1729

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1730 PPPISPPSPPPA 1741


>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
          Length = 1915

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1709 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1758

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1759 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1797



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1651 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1709

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1710 PPPISPPSPPPA 1721


>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
          Length = 1952

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1746 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1795

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1796 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1834



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1688 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1746

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1747 PPPISPPSPPPA 1758


>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
          Length = 1886

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1680 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1729

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1730 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1768



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1622 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1680

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1681 PPPISPPSPPPA 1692


>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
          Length = 1957

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1751 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1800

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1801 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1839



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1693 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1751

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1752 PPPISPPSPPPA 1763


>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
          Length = 1962

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 25   PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
            PP P S  S  P P    P            ISP + F    P   S+P+P  P     L
Sbjct: 1756 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1805

Query: 85   AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            +       +S   P + PL    P P    PP +PC PP S   LS
Sbjct: 1806 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1844



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 65   SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
            SSP E SL + PSRP   H     R   +      +   +       P+  P  C  LPP
Sbjct: 1698 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1756

Query: 117  YLPCAPPASPGA 128
              P +PP+ P A
Sbjct: 1757 PPPISPPSPPPA 1768


>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
          Length = 638

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 38/121 (31%), Positives = 44/121 (36%), Gaps = 24/121 (19%)

Query: 23  GRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSR----- 77
           G  P P    SG+P P   P G LP W        P    P SS    S P+P +     
Sbjct: 476 GMMPPPPPPPSGQPPP--PPSGPLPPWQQQQQQPPPPP--PPSSSMASSTPLPWQQNTTT 531

Query: 78  -----------PRQKHHLAGSRSLDMLSA-GNPSSTPLPHRRPGPCSALPPYLPCAPPAS 125
                      P Q+   A + S       GNP+  PLP   PG    LPP  P  PP  
Sbjct: 532 TTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLP---PGVQPPLPPGAPPPPPPP 588

Query: 126 P 126
           P
Sbjct: 589 P 589


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 40/137 (29%), Positives = 51/137 (37%), Gaps = 26/137 (18%)

Query: 10   MEHISPQRPRNSGGRPPG------------PCSQRSGRPTPGRSPPGRLPGWVCSDTHIS 57
            + H+ P  P     R P             P  +  G PTP  S    LPG    +   +
Sbjct: 1205 LAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTP-TSKKVPLPGPGSPEVKRA 1263

Query: 58   PGTCFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPY 117
             GT  P S    +  P P+ P+    +AG  S     +  PS  P P R+P    A PP 
Sbjct: 1264 HGTPPPVSP---KPPPPPTAPKPVKAVAGLPS----GSAGPSPAPSPARQPPAALAKPPG 1316

Query: 118  LP------CAPPASPGA 128
             P       A P SPGA
Sbjct: 1317 TPPSLGASPAKPPSPGA 1333



 Score = 27.3 bits (59), Expect = 3.5
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 74   VPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
            V  RP+ K   AG      LS  + + T    RRP    A PP LP  PP
Sbjct: 1148 VKRRPKAKEREAGPEPPPPLSVYH-NGTGTVRRRPASEQAGPPELPPPPP 1196


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 16/128 (12%)

Query: 15  PQRPRNSGGRPPGPCSQRSGRPTPGRS-----PPGRLPGWVCSD---THISP-GTCFPAS 65
           P  P  +G  PP   +  +G P  G S     PPG +P    S     H  P G   P +
Sbjct: 265 PMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHA 324

Query: 66  SPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPPYL 118
            P       P RP       G   + M   G P  +P+       PH   GP   +PP+ 
Sbjct: 325 GPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHG 384

Query: 119 PCAPPASP 126
              PP  P
Sbjct: 385 YTGPPRPP 392



 Score = 30.8 bits (68), Expect = 0.32
 Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 26  PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
           P   S  SG P PG  PPG  P  V     + PG   P + P     P P  P    H  
Sbjct: 223 PVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPG--IPPAMP-----PPPMPPGAAGH-- 273

Query: 86  GSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
           G  S     AG+P      H  P P   +P
Sbjct: 274 GPPSAGTPGAGHPGHGH-SHPHPFPPGGMP 302



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 21/124 (16%)

Query: 9   RMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPR 68
           ++ H  P    +    PPG   Q   RP PG   PG  P  +       P    P  SP 
Sbjct: 310 QLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGM-------PPRGPPFGSPM 362

Query: 69  ERSLPVPSRPRQKHHLAGSRSL--DMLSAGNP-------SSTPLPHRRPGPCSALPPYLP 119
               P+P      H + G   L       G P          PLP  RP P   +PP  P
Sbjct: 363 GHPGPMP-----PHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGP 417

Query: 120 CAPP 123
              P
Sbjct: 418 LRGP 421


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 36/117 (30%), Positives = 40/117 (34%), Gaps = 39/117 (33%)

Query: 18  PRNSGGRPPGPC---SQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           P N G RPP P     Q  G+P  G  PPG             P    P   P     P 
Sbjct: 266 PPNRGDRPPPPVLFPGQPFGQPPLGPLPPG-------------PPPPVPGYGPP----PG 308

Query: 75  PSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCS-----ALPPYLPCAPPASP 126
           P  P+Q                 P   P P R PGP       A PP+LP  PP +P
Sbjct: 309 PPPPQQ--------------GPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 351



 Score = 32.0 bits (71), Expect = 0.14
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 15  PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
           P  P    G PPGP   + G P P    P R PG +     ++P    P         P 
Sbjct: 296 PPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPG--------PP 347

Query: 75  PSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPY 117
           P  P    H+  +      ++G P+S         P    PPY
Sbjct: 348 PGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
            sapiens]
          Length = 1309

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 39/115 (33%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 20   NSGGRPPGPCSQRSGRPT-PGRSPPGRLPGWVCSDTHISPGTCFPASS-PRERSLPVPSR 77
            +S   P  P    S  PT P RSP   +P    +DT  SP +  P+SS P   +    +R
Sbjct: 1102 SSESLPGSPTHSLSPSPTTPCRSPAPDVP----ADTTASPPSASPSSSSPASPAAAGHTR 1157

Query: 78   PRQKHHLAGSRSLDMLSAGNPSST----PLPHRRPGPCSALPPYLPCAPPASPGA 128
            P   H LA          G   ST    P P   P P SA PP  P   P  P A
Sbjct: 1158 PSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACP-PISAPPPRSPSPLPGHPPA 1211


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 26  PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
           P P S  +  P     PP  L       TH  P    P      +S P+PS P Q   L 
Sbjct: 400 PSPFSMNANLP-----PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 454

Query: 86  GSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
            S++L    A +P  T L    P P  A  P++P  PP
Sbjct: 455 QSQNLPPPPASHP-PTGLHQVAPQPPFAQHPFVPGGPP 491



 Score = 33.9 bits (76), Expect = 0.037
 Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 6   TSGRMEHISPQRPRNSGGRPPGPCS-------QRSGRPTPGRSPPGRLPGWVCSDTHISP 58
           ++G+    S  +P   G  PPGP S       Q  G P P   PP    G     T  SP
Sbjct: 278 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGT--SP 335

Query: 59  GTCFPASS---PRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
              +P +S   P  +S     +P ++  L  +  L M     P +TP+P          P
Sbjct: 336 AAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIPQLPAPQAHKHP 394

Query: 116 PYLPCAPPASPGA 128
           P+L    P S  A
Sbjct: 395 PHLSGPSPFSMNA 407



 Score = 28.9 bits (63), Expect = 1.2
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 24  RPPGPCSQRSGRPTPGRSPPGR----LPGWVCSDTHISPGTCFPASS----PRERSLPVP 75
           +PP   +     P P  +PPG      PG   S T + P     AS     P+  + PVP
Sbjct: 183 QPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVP 242

Query: 76  SRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP 119
                  H+  + +L      +P   P PH  P P S  PP  P
Sbjct: 243 HT-----HIQQAPAL------HPQRPPSPHPPPHP-SPHPPLQP 274


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 26   PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
            P P S  +  P     PP  L       TH  P    P      +S P+PS P Q   L 
Sbjct: 954  PSPFSMNANLP-----PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 1008

Query: 86   GSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
             S++L    A +P  T L    P P  A  P++P  PP
Sbjct: 1009 QSQNLPPPPASHP-PTGLHQVAPQPPFAQHPFVPGGPP 1045



 Score = 33.9 bits (76), Expect = 0.037
 Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 6   TSGRMEHISPQRPRNSGGRPPGPCS-------QRSGRPTPGRSPPGRLPGWVCSDTHISP 58
           ++G+    S  +P   G  PPGP S       Q  G P P   PP    G     T  SP
Sbjct: 832 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGT--SP 889

Query: 59  GTCFPASS---PRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
              +P +S   P  +S     +P ++  L  +  L M     P +TP+P          P
Sbjct: 890 AAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIPQLPAPQAHKHP 948

Query: 116 PYLPCAPPASPGA 128
           P+L    P S  A
Sbjct: 949 PHLSGPSPFSMNA 961



 Score = 28.9 bits (63), Expect = 1.2
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 24  RPPGPCSQRSGRPTPGRSPPGR----LPGWVCSDTHISPGTCFPASS----PRERSLPVP 75
           +PP   +     P P  +PPG      PG   S T + P     AS     P+  + PVP
Sbjct: 737 QPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVP 796

Query: 76  SRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP 119
                  H+  + +L      +P   P PH  P P S  PP  P
Sbjct: 797 HT-----HIQQAPAL------HPQRPPSPHPPPHP-SPHPPLQP 828


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 26   PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
            P P S  +  P     PP  L       TH  P    P      +S P+PS P Q   L 
Sbjct: 954  PSPFSMNANLP-----PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 1008

Query: 86   GSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
             S++L    A +P  T L    P P  A  P++P  PP
Sbjct: 1009 QSQNLPPPPASHP-PTGLHQVAPQPPFAQHPFVPGGPP 1045



 Score = 33.9 bits (76), Expect = 0.037
 Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 6   TSGRMEHISPQRPRNSGGRPPGPCS-------QRSGRPTPGRSPPGRLPGWVCSDTHISP 58
           ++G+    S  +P   G  PPGP S       Q  G P P   PP    G     T  SP
Sbjct: 832 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGT--SP 889

Query: 59  GTCFPASS---PRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
              +P +S   P  +S     +P ++  L  +  L M     P +TP+P          P
Sbjct: 890 AAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIPQLPAPQAHKHP 948

Query: 116 PYLPCAPPASPGA 128
           P+L    P S  A
Sbjct: 949 PHLSGPSPFSMNA 961



 Score = 28.9 bits (63), Expect = 1.2
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 24  RPPGPCSQRSGRPTPGRSPPGR----LPGWVCSDTHISPGTCFPASS----PRERSLPVP 75
           +PP   +     P P  +PPG      PG   S T + P     AS     P+  + PVP
Sbjct: 737 QPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVP 796

Query: 76  SRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP 119
                  H+  + +L      +P   P PH  P P S  PP  P
Sbjct: 797 HT-----HIQQAPAL------HPQRPPSPHPPPHP-SPHPPLQP 828


>gi|239754450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 28  PCSQRSGRPTPGRSP-----PGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKH 82
           P + RSG   PG SP     PG LP W   +   S  T +   SP   SLP+  R R   
Sbjct: 40  PAASRSG---PGASPTVNTDPGLLPKWG-REQAASRETGWKGLSPTTASLPL-LRGRPCF 94

Query: 83  HLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            L G  +        PS   L   +  PCS L P+LP +P  + G  S
Sbjct: 95  LLRGCSTPRRALHELPSRKHLRVPQFTPCSLLKPFLPVSPQGAHGVSS 142


>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
           sapiens]
          Length = 528

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 25/118 (21%)

Query: 5   TTSGRMEHISPQRPRNSGGRPPGPCSQRSGR-PTPGRSPPGRLPGWVCSDTHISPGTC-- 61
           T S  +   S   P  +GG+  GP   RS R P P R P   LP   C       GT   
Sbjct: 228 TLSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRP---LP---CESLRTPSGTAGP 281

Query: 62  -FPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYL 118
             PAS P  R  P P R R                G  S +  P   PGP    P  L
Sbjct: 282 RSPASGPDARGAPTPGRAR---------------GGGASWSATPTTIPGPGPPRPQLL 324



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 26/104 (25%)

Query: 51  CSDTHISPGTCFPASSPRERS--LPVPSRPRQKHHLAG---------SRSLDMLSAGNPS 99
           C    +SP +C   S P      L V +R   +    G         S  L   SAG P 
Sbjct: 183 CLCQRVSPASCPSRSCPSAAVFILAVAARSCSRRRRVGTSGPEASTLSSGLLTCSAGEPP 242

Query: 100 ST---------------PLPHRRPGPCSALPPYLPCAPPASPGA 128
           +T               P P RRP PC +L      A P SP +
Sbjct: 243 TTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPAS 286


>gi|239748999 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 28  PCSQRSGRPTPGRSP-----PGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKH 82
           P + RSG   PG SP     PG LP W   +   S  T +   SP   SLP+  R R   
Sbjct: 40  PAASRSG---PGASPTVNTDPGLLPKWG-REQAASRETGWKGLSPTTASLPL-LRGRPCF 94

Query: 83  HLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
            L G  +        PS   L   +  PCS L P+LP +P  + G  S
Sbjct: 95  LLRGCSTPRRALHELPSRKHLRVPQFTPCSLLKPFLPVSPQGAHGVSS 142


>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
           sapiens]
          Length = 528

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 25/118 (21%)

Query: 5   TTSGRMEHISPQRPRNSGGRPPGPCSQRSGR-PTPGRSPPGRLPGWVCSDTHISPGTC-- 61
           T S  +   S   P  +GG+  GP   RS R P P R P   LP   C       GT   
Sbjct: 228 TLSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRP---LP---CESLRTPSGTAGP 281

Query: 62  -FPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYL 118
             PAS P  R  P P R R                G  S +  P   PGP    P  L
Sbjct: 282 RSPASGPDARGAPTPGRAR---------------GGGASWSATPTTIPGPGPPRPQLL 324



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 26/104 (25%)

Query: 51  CSDTHISPGTCFPASSPRERS--LPVPSRPRQKHHLAG---------SRSLDMLSAGNPS 99
           C    +SP +C   S P      L V +R   +    G         S  L   SAG P 
Sbjct: 183 CLCQRVSPASCPSRSCPSAAVFILAVAARSCSRRRRVGTSGPEASTLSSGLLTCSAGEPP 242

Query: 100 ST---------------PLPHRRPGPCSALPPYLPCAPPASPGA 128
           +T               P P RRP PC +L      A P SP +
Sbjct: 243 TTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPAS 286


>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 528

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 25/118 (21%)

Query: 5   TTSGRMEHISPQRPRNSGGRPPGPCSQRSGR-PTPGRSPPGRLPGWVCSDTHISPGTC-- 61
           T S  +   S   P  +GG+  GP   RS R P P R P   LP   C       GT   
Sbjct: 228 TLSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRP---LP---CESLRTPSGTAGP 281

Query: 62  -FPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYL 118
             PAS P  R  P P R R                G  S +  P   PGP    P  L
Sbjct: 282 RSPASGPDARGAPTPGRAR---------------GGGASWSATPTTIPGPGPPRPQLL 324



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 26/104 (25%)

Query: 51  CSDTHISPGTCFPASSPRERS--LPVPSRPRQKHHLAG---------SRSLDMLSAGNPS 99
           C    +SP +C   S P      L V +R   +    G         S  L   SAG P 
Sbjct: 183 CLCQRVSPASCPSRSCPSAAVFILAVAARSCSRRRRVGTSGPEASTLSSGLLTCSAGEPP 242

Query: 100 ST---------------PLPHRRPGPCSALPPYLPCAPPASPGA 128
           +T               P P RRP PC +L      A P SP +
Sbjct: 243 TTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPAS 286


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,028,484
Number of Sequences: 37866
Number of extensions: 657114
Number of successful extensions: 4844
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 674
Number of HSP's that attempted gapping in prelim test: 3515
Number of HSP's gapped (non-prelim): 1801
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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