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Search of human proteins with 239747754
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753180 PREDICTED: hypothetical protein [Homo sapiens] 285 9e-78
gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo ... 285 9e-78
gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo ... 285 9e-78
gi|19924099 synapsin I isoform Ia [Homo sapiens] 45 2e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 45 2e-05
gi|122937321 UNC homeobox [Homo sapiens] 44 4e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 41 3e-04
gi|188536004 zinc finger protein 469 [Homo sapiens] 40 5e-04
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 40 7e-04
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 39 9e-04
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 39 9e-04
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 39 9e-04
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 39 9e-04
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 39 9e-04
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 39 9e-04
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 39 9e-04
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 39 9e-04
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 39 0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens] 39 0.002
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 39 0.002
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 38 0.002
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 38 0.002
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 38 0.002
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 38 0.002
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 38 0.002
gi|239754450 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 38 0.003
gi|239748999 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 38 0.003
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
>gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 285 bits (728), Expect = 9e-78
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT
Sbjct: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
Query: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
Query: 121 APPASPGALS 130
APPASPGALS
Sbjct: 121 APPASPGALS 130
>gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
sapiens]
Length = 130
Score = 285 bits (728), Expect = 9e-78
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT
Sbjct: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
Query: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
Query: 121 APPASPGALS 130
APPASPGALS
Sbjct: 121 APPASPGALS 130
>gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo
sapiens]
Length = 130
Score = 285 bits (728), Expect = 9e-78
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT
Sbjct: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
Query: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPC 120
Query: 121 APPASPGALS 130
APPASPGALS
Sbjct: 121 APPASPGALS 130
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 44.7 bits (104), Expect = 2e-05
Identities = 43/134 (32%), Positives = 51/134 (38%), Gaps = 36/134 (26%)
Query: 16 QRPRNSGGRP-PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
QRP GG P PGP QR G P R PP H+S G PA SP + LP
Sbjct: 459 QRPPPQGGPPQPGPGPQRQGPPLQQRPPPQ-------GQQHLS-GLGPPAGSPLPQRLPS 510
Query: 75 PS----------------RPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSA----- 113
P+ + RQ +AG A P ++P P R+ GP A
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP--PAARPPASPSPQRQAGPPQATRQTS 568
Query: 114 ----LPPYLPCAPP 123
PP APP
Sbjct: 569 VSGPAPPKASGAPP 582
Score = 40.0 bits (92), Expect = 5e-04
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 32/110 (29%)
Query: 19 RNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRP 78
R + +P GP +Q+ RP P PP PG P+ + P+ RP
Sbjct: 446 RQTSQQPAGPPAQQ--RPPPQGGPPQPGPG------------------PQRQGPPLQQRP 485
Query: 79 --RQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
+ + HL+G G P+ +PLP R P P SA P P + A P
Sbjct: 486 PPQGQQHLSG--------LGPPAGSPLPQRLPSPTSA--PQQPASQAAPP 525
Score = 30.8 bits (68), Expect = 0.32
Identities = 32/116 (27%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 15 PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
P P+ SG P G QR G PP + PG S P + P P
Sbjct: 572 PAPPKASGAPPGG--QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPR 622
Query: 75 PSRP----RQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
PS P R K LA S D+ ++ PH + +L PA P
Sbjct: 623 PSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPP 678
Score = 27.7 bits (60), Expect = 2.7
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 32/120 (26%)
Query: 9 RMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPR 68
R +S P + G PPG QR G PP + PG S P + P
Sbjct: 565 RQTSVSGPAPPKASGAPPGG-QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPP 616
Query: 69 ERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGA 128
P PS P P RP P A P PPA+ A
Sbjct: 617 TTQQPRPSGPG------------------------PAGRPKPQLAQKPSQDVPPPATAAA 652
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 44.7 bits (104), Expect = 2e-05
Identities = 43/134 (32%), Positives = 51/134 (38%), Gaps = 36/134 (26%)
Query: 16 QRPRNSGGRP-PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
QRP GG P PGP QR G P R PP H+S G PA SP + LP
Sbjct: 459 QRPPPQGGPPQPGPGPQRQGPPLQQRPPPQ-------GQQHLS-GLGPPAGSPLPQRLPS 510
Query: 75 PS----------------RPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSA----- 113
P+ + RQ +AG A P ++P P R+ GP A
Sbjct: 511 PTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAP--PAARPPASPSPQRQAGPPQATRQTS 568
Query: 114 ----LPPYLPCAPP 123
PP APP
Sbjct: 569 VSGPAPPKASGAPP 582
Score = 40.0 bits (92), Expect = 5e-04
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 32/110 (29%)
Query: 19 RNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRP 78
R + +P GP +Q+ RP P PP PG P+ + P+ RP
Sbjct: 446 RQTSQQPAGPPAQQ--RPPPQGGPPQPGPG------------------PQRQGPPLQQRP 485
Query: 79 --RQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
+ + HL+G G P+ +PLP R P P SA P P + A P
Sbjct: 486 PPQGQQHLSG--------LGPPAGSPLPQRLPSPTSA--PQQPASQAAPP 525
Score = 32.0 bits (71), Expect = 0.14
Identities = 34/110 (30%), Positives = 40/110 (36%), Gaps = 21/110 (19%)
Query: 15 PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
P P+ SG P G QR G PP + PG S P + P P
Sbjct: 572 PAPPKASGAPPGG--QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPR 622
Query: 75 PSRP----RQKHHLAGSRSLDM-----LSAGNPSSTPLPHRRPGPCSALP 115
PS P R K LA S D+ +AG P P P + P A P
Sbjct: 623 PSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGP---PHPQLKASPAQAQP 669
Score = 27.7 bits (60), Expect = 2.7
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 32/120 (26%)
Query: 9 RMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPR 68
R +S P + G PPG QR G PP + PG S P + P
Sbjct: 565 RQTSVSGPAPPKASGAPPGG-QQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPP 616
Query: 69 ERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGA 128
P PS P P RP P A P PPA+ A
Sbjct: 617 TTQQPRPSGPG------------------------PAGRPKPQLAQKPSQDVPPPATAAA 652
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 43.9 bits (102), Expect = 4e-05
Identities = 40/137 (29%), Positives = 53/137 (38%), Gaps = 36/137 (26%)
Query: 13 ISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERS- 71
+SP+ P GP + SG +PPG P +PGTC PA P +RS
Sbjct: 242 LSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPP---------APGTCDPAFYPSQRSG 292
Query: 72 ---LPVPSRPRQKHHL-----AGSRSLDMLSAGNPSSTPL---------PHRRPGPCSA- 113
P P RP K A +++ +AG P ++P P RR +A
Sbjct: 293 AGPQPRPGRPADKDAASCGPGAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAA 352
Query: 114 --------LPPYLPCAP 122
P LPCAP
Sbjct: 353 AAAAAGLDFAPGLPCAP 369
Score = 28.1 bits (61), Expect = 2.1
Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCS----DTHISPGTCFPASSPRERSLPVPSRPRQ 80
PP P +Q S G PG P + D SPG PA +P R L +
Sbjct: 416 PPAPPAQASFGAFSG---PGGAPDSAFARRSPDAVASPGAPAPAPAPF-RDLASAAATEG 471
Query: 81 KHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP--CAPPASPGA 128
G D +AG P P RPGP P P C P PGA
Sbjct: 472 ----GGGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVP-EPGA 516
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 40.8 bits (94), Expect = 3e-04
Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 15 PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
P P + GG PP P + P P PP R G +P P P S+ V
Sbjct: 278 PPPPPSRGGPPPPPPPPHNSGPPP---PPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAV 334
Query: 75 PSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASP 126
P P + + +L + P P GP + PP P PP P
Sbjct: 335 PPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPP 386
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 40.0 bits (92), Expect = 5e-04
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 26 PGPCSQRSGRPTPGR-----SPPGRLPGWVCSDTHISPG-TCFPASSPRERSLPVPSR-- 77
PGP SQ SG P PG S P G + S+T +P FP+ SP LP ++
Sbjct: 3700 PGPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAK 3759
Query: 78 -----PRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSA-------LPPYLPCAPPAS 125
PR+ SL G S+ + PGP + P P PP +
Sbjct: 3760 SCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRT 3819
Query: 126 P 126
P
Sbjct: 3820 P 3820
Score = 30.4 bits (67), Expect = 0.41
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 4 QTTSGRMEHISPQRPRNSG-------GRPPGPCSQRSGRPTPGRSPPGRLP 47
+ T G E PQ+PR + G P P RP PGRSP R P
Sbjct: 1097 ELTQGPRED-EPQKPRKAARQEAGGDGAPANPEEPGGSRPGPGRSPQARGP 1146
Score = 28.1 bits (61), Expect = 2.1
Identities = 31/124 (25%), Positives = 36/124 (29%), Gaps = 35/124 (28%)
Query: 14 SPQRPRNSGGRPPGPCS-----------QRSGRPTPGRSPPGRLPGWVCSDTHISPGTCF 62
SP P + + PGP Q +G P P PP LP TH P
Sbjct: 614 SPANPSSEESQLPGPLGPSAFFHPPTHPQETGSPFPSPEPPHSLP------THYQPE--- 664
Query: 63 PASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAP 122
P + P L + L TP PH P P AP
Sbjct: 665 ----------PAKAFPFPADGLGAEGAFQCL-----EETPFPHEGPEVGRGGLQGFPRAP 709
Query: 123 PASP 126
P P
Sbjct: 710 PPYP 713
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 39.7 bits (91), Expect = 7e-04
Identities = 36/120 (30%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 13 ISPQRPRNSGG----RPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTC---FPAS 65
+SP P G PP PC+ P P +PP P V SD + P P
Sbjct: 201 VSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPI 260
Query: 66 SPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPAS 125
P LP P K A S + P P P LPPY C+P AS
Sbjct: 261 PPPLPLLPPCGYPGLKAEPA--------SPAQDAQEP-----PAPPPPLPPYASCSPRAS 307
Score = 30.0 bits (66), Expect = 0.54
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 29/125 (23%)
Query: 24 RPPGPCSQRSGRPTPG---RSPPGRLPGWVCSDTHISPGTCFPASSPR----------ER 70
RP G G+ G R+P RLP S G P +SPR R
Sbjct: 110 RPAGQRDVAGGKTGQGPGSRAPSPRLPNKTIS------GPLIPPASPRLGNTSEAHGAAR 163
Query: 71 SLP----VPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCS-----ALPPYLPCA 121
+ P VP+ P L + +P TPL PGP + + P +PCA
Sbjct: 164 TAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSP-PGPLTKGNLPVVAPPVPCA 222
Query: 122 PPASP 126
PP P
Sbjct: 223 PPPPP 227
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1749 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1798
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1799 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1837
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1691 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1749
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1750 PPPISPPSPPPA 1761
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1726 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1775
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1776 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1814
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1668 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1726
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1727 PPPISPPSPPPA 1738
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1729 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1778
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1779 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1817
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1671 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1729
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1730 PPPISPPSPPPA 1741
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1709 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1758
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1759 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1797
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1651 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1709
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1710 PPPISPPSPPPA 1721
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1746 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1795
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1796 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1834
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1688 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1746
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1747 PPPISPPSPPPA 1758
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1680 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1729
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1730 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1768
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1622 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1680
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1681 PPPISPPSPPPA 1692
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1751 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1800
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1801 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1839
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1693 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1751
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1752 PPPISPPSPPPA 1763
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 39.3 bits (90), Expect = 9e-04
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 25 PPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHL 84
PP P S S P P P ISP + F P S+P+P P L
Sbjct: 1756 PPPPISPPSPPPAPAPLAP---------PPDISPFSLF-CPPPSPPSIPLPLPPPTFFPL 1805
Query: 85 AGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
+ +S P + PL P P PP +PC PP S LS
Sbjct: 1806 S-------VSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLS 1844
Score = 26.2 bits (56), Expect = 7.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 65 SSPRERSLPV-PSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPP 116
SSP E SL + PSRP H R + + + P+ P C LPP
Sbjct: 1698 SSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISPSACP-LPP 1756
Query: 117 YLPCAPPASPGA 128
P +PP+ P A
Sbjct: 1757 PPPISPPSPPPA 1768
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 38.9 bits (89), Expect = 0.001
Identities = 38/121 (31%), Positives = 44/121 (36%), Gaps = 24/121 (19%)
Query: 23 GRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSR----- 77
G P P SG+P P P G LP W P P SS S P+P +
Sbjct: 476 GMMPPPPPPPSGQPPP--PPSGPLPPWQQQQQQPPPPP--PPSSSMASSTPLPWQQNTTT 531
Query: 78 -----------PRQKHHLAGSRSLDMLSA-GNPSSTPLPHRRPGPCSALPPYLPCAPPAS 125
P Q+ A + S GNP+ PLP PG LPP P PP
Sbjct: 532 TTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLP---PGVQPPLPPGAPPPPPPP 588
Query: 126 P 126
P
Sbjct: 589 P 589
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 38.5 bits (88), Expect = 0.002
Identities = 40/137 (29%), Positives = 51/137 (37%), Gaps = 26/137 (18%)
Query: 10 MEHISPQRPRNSGGRPPG------------PCSQRSGRPTPGRSPPGRLPGWVCSDTHIS 57
+ H+ P P R P P + G PTP S LPG + +
Sbjct: 1205 LAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTP-TSKKVPLPGPGSPEVKRA 1263
Query: 58 PGTCFPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPY 117
GT P S + P P+ P+ +AG S + PS P P R+P A PP
Sbjct: 1264 HGTPPPVSP---KPPPPPTAPKPVKAVAGLPS----GSAGPSPAPSPARQPPAALAKPPG 1316
Query: 118 LP------CAPPASPGA 128
P A P SPGA
Sbjct: 1317 TPPSLGASPAKPPSPGA 1333
Score = 27.3 bits (59), Expect = 3.5
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 74 VPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
V RP+ K AG LS + + T RRP A PP LP PP
Sbjct: 1148 VKRRPKAKEREAGPEPPPPLSVYH-NGTGTVRRRPASEQAGPPELPPPPP 1196
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 38.5 bits (88), Expect = 0.002
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 16/128 (12%)
Query: 15 PQRPRNSGGRPPGPCSQRSGRPTPGRS-----PPGRLPGWVCSD---THISP-GTCFPAS 65
P P +G PP + +G P G S PPG +P S H P G P +
Sbjct: 265 PMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHA 324
Query: 66 SPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPL-------PHRRPGPCSALPPYL 118
P P RP G + M G P +P+ PH GP +PP+
Sbjct: 325 GPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHG 384
Query: 119 PCAPPASP 126
PP P
Sbjct: 385 YTGPPRPP 392
Score = 30.8 bits (68), Expect = 0.32
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 26 PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
P S SG P PG PPG P V + PG P + P P P P H
Sbjct: 223 PVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPG--IPPAMP-----PPPMPPGAAGH-- 273
Query: 86 GSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
G S AG+P H P P +P
Sbjct: 274 GPPSAGTPGAGHPGHGH-SHPHPFPPGGMP 302
Score = 28.1 bits (61), Expect = 2.1
Identities = 34/124 (27%), Positives = 41/124 (33%), Gaps = 21/124 (16%)
Query: 9 RMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPR 68
++ H P + PPG Q RP PG PG P + P P SP
Sbjct: 310 QLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGM-------PPRGPPFGSPM 362
Query: 69 ERSLPVPSRPRQKHHLAGSRSL--DMLSAGNP-------SSTPLPHRRPGPCSALPPYLP 119
P+P H + G L G P PLP RP P +PP P
Sbjct: 363 GHPGPMP-----PHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGP 417
Query: 120 CAPP 123
P
Sbjct: 418 LRGP 421
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 38.1 bits (87), Expect = 0.002
Identities = 36/117 (30%), Positives = 40/117 (34%), Gaps = 39/117 (33%)
Query: 18 PRNSGGRPPGPC---SQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
P N G RPP P Q G+P G PPG P P P P
Sbjct: 266 PPNRGDRPPPPVLFPGQPFGQPPLGPLPPG-------------PPPPVPGYGPP----PG 308
Query: 75 PSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCS-----ALPPYLPCAPPASP 126
P P+Q P P P R PGP A PP+LP PP +P
Sbjct: 309 PPPPQQ--------------GPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 351
Score = 32.0 bits (71), Expect = 0.14
Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 15 PQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPV 74
P P G PPGP + G P P P R PG + ++P P P
Sbjct: 296 PPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPG--------PP 347
Query: 75 PSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPY 117
P P H+ + ++G P+S P PPY
Sbjct: 348 PGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 38.1 bits (87), Expect = 0.002
Identities = 39/115 (33%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 20 NSGGRPPGPCSQRSGRPT-PGRSPPGRLPGWVCSDTHISPGTCFPASS-PRERSLPVPSR 77
+S P P S PT P RSP +P +DT SP + P+SS P + +R
Sbjct: 1102 SSESLPGSPTHSLSPSPTTPCRSPAPDVP----ADTTASPPSASPSSSSPASPAAAGHTR 1157
Query: 78 PRQKHHLAGSRSLDMLSAGNPSST----PLPHRRPGPCSALPPYLPCAPPASPGA 128
P H LA G ST P P P P SA PP P P P A
Sbjct: 1158 PSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACP-PISAPPPRSPSPLPGHPPA 1211
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 26 PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
P P S + P PP L TH P P +S P+PS P Q L
Sbjct: 400 PSPFSMNANLP-----PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 454
Query: 86 GSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
S++L A +P T L P P A P++P PP
Sbjct: 455 QSQNLPPPPASHP-PTGLHQVAPQPPFAQHPFVPGGPP 491
Score = 33.9 bits (76), Expect = 0.037
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 6 TSGRMEHISPQRPRNSGGRPPGPCS-------QRSGRPTPGRSPPGRLPGWVCSDTHISP 58
++G+ S +P G PPGP S Q G P P PP G T SP
Sbjct: 278 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGT--SP 335
Query: 59 GTCFPASS---PRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
+P +S P +S +P ++ L + L M P +TP+P P
Sbjct: 336 AAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIPQLPAPQAHKHP 394
Query: 116 PYLPCAPPASPGA 128
P+L P S A
Sbjct: 395 PHLSGPSPFSMNA 407
Score = 28.9 bits (63), Expect = 1.2
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 24 RPPGPCSQRSGRPTPGRSPPGR----LPGWVCSDTHISPGTCFPASS----PRERSLPVP 75
+PP + P P +PPG PG S T + P AS P+ + PVP
Sbjct: 183 QPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVP 242
Query: 76 SRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP 119
H+ + +L +P P PH P P S PP P
Sbjct: 243 HT-----HIQQAPAL------HPQRPPSPHPPPHP-SPHPPLQP 274
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 26 PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
P P S + P PP L TH P P +S P+PS P Q L
Sbjct: 954 PSPFSMNANLP-----PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 1008
Query: 86 GSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
S++L A +P T L P P A P++P PP
Sbjct: 1009 QSQNLPPPPASHP-PTGLHQVAPQPPFAQHPFVPGGPP 1045
Score = 33.9 bits (76), Expect = 0.037
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 6 TSGRMEHISPQRPRNSGGRPPGPCS-------QRSGRPTPGRSPPGRLPGWVCSDTHISP 58
++G+ S +P G PPGP S Q G P P PP G T SP
Sbjct: 832 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGT--SP 889
Query: 59 GTCFPASS---PRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
+P +S P +S +P ++ L + L M P +TP+P P
Sbjct: 890 AAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIPQLPAPQAHKHP 948
Query: 116 PYLPCAPPASPGA 128
P+L P S A
Sbjct: 949 PHLSGPSPFSMNA 961
Score = 28.9 bits (63), Expect = 1.2
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 24 RPPGPCSQRSGRPTPGRSPPGR----LPGWVCSDTHISPGTCFPASS----PRERSLPVP 75
+PP + P P +PPG PG S T + P AS P+ + PVP
Sbjct: 737 QPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVP 796
Query: 76 SRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP 119
H+ + +L +P P PH P P S PP P
Sbjct: 797 HT-----HIQQAPAL------HPQRPPSPHPPPHP-SPHPPLQP 828
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 26 PGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKHHLA 85
P P S + P PP L TH P P +S P+PS P Q L
Sbjct: 954 PSPFSMNANLP-----PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 1008
Query: 86 GSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPP 123
S++L A +P T L P P A P++P PP
Sbjct: 1009 QSQNLPPPPASHP-PTGLHQVAPQPPFAQHPFVPGGPP 1045
Score = 33.9 bits (76), Expect = 0.037
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 6 TSGRMEHISPQRPRNSGGRPPGPCS-------QRSGRPTPGRSPPGRLPGWVCSDTHISP 58
++G+ S +P G PPGP S Q G P P PP G T SP
Sbjct: 832 SAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGT--SP 889
Query: 59 GTCFPASS---PRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALP 115
+P +S P +S +P ++ L + L M P +TP+P P
Sbjct: 890 AAAYPHTSLQLPASQSALQSQQPPREQPLPPA-PLAMPHIKPPPTTPIPQLPAPQAHKHP 948
Query: 116 PYLPCAPPASPGA 128
P+L P S A
Sbjct: 949 PHLSGPSPFSMNA 961
Score = 28.9 bits (63), Expect = 1.2
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 24 RPPGPCSQRSGRPTPGRSPPGR----LPGWVCSDTHISPGTCFPASS----PRERSLPVP 75
+PP + P P +PPG PG S T + P AS P+ + PVP
Sbjct: 737 QPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVP 796
Query: 76 SRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLP 119
H+ + +L +P P PH P P S PP P
Sbjct: 797 HT-----HIQQAPAL------HPQRPPSPHPPPHP-SPHPPLQP 828
>gi|239754450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 37.7 bits (86), Expect = 0.003
Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 28 PCSQRSGRPTPGRSP-----PGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKH 82
P + RSG PG SP PG LP W + S T + SP SLP+ R R
Sbjct: 40 PAASRSG---PGASPTVNTDPGLLPKWG-REQAASRETGWKGLSPTTASLPL-LRGRPCF 94
Query: 83 HLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
L G + PS L + PCS L P+LP +P + G S
Sbjct: 95 LLRGCSTPRRALHELPSRKHLRVPQFTPCSLLKPFLPVSPQGAHGVSS 142
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 37.7 bits (86), Expect = 0.003
Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 25/118 (21%)
Query: 5 TTSGRMEHISPQRPRNSGGRPPGPCSQRSGR-PTPGRSPPGRLPGWVCSDTHISPGTC-- 61
T S + S P +GG+ GP RS R P P R P LP C GT
Sbjct: 228 TLSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRP---LP---CESLRTPSGTAGP 281
Query: 62 -FPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYL 118
PAS P R P P R R G S + P PGP P L
Sbjct: 282 RSPASGPDARGAPTPGRAR---------------GGGASWSATPTTIPGPGPPRPQLL 324
Score = 27.7 bits (60), Expect = 2.7
Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 26/104 (25%)
Query: 51 CSDTHISPGTCFPASSPRERS--LPVPSRPRQKHHLAG---------SRSLDMLSAGNPS 99
C +SP +C S P L V +R + G S L SAG P
Sbjct: 183 CLCQRVSPASCPSRSCPSAAVFILAVAARSCSRRRRVGTSGPEASTLSSGLLTCSAGEPP 242
Query: 100 ST---------------PLPHRRPGPCSALPPYLPCAPPASPGA 128
+T P P RRP PC +L A P SP +
Sbjct: 243 TTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPAS 286
>gi|239748999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 37.7 bits (86), Expect = 0.003
Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 28 PCSQRSGRPTPGRSP-----PGRLPGWVCSDTHISPGTCFPASSPRERSLPVPSRPRQKH 82
P + RSG PG SP PG LP W + S T + SP SLP+ R R
Sbjct: 40 PAASRSG---PGASPTVNTDPGLLPKWG-REQAASRETGWKGLSPTTASLPL-LRGRPCF 94
Query: 83 HLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYLPCAPPASPGALS 130
L G + PS L + PCS L P+LP +P + G S
Sbjct: 95 LLRGCSTPRRALHELPSRKHLRVPQFTPCSLLKPFLPVSPQGAHGVSS 142
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 37.7 bits (86), Expect = 0.003
Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 25/118 (21%)
Query: 5 TTSGRMEHISPQRPRNSGGRPPGPCSQRSGR-PTPGRSPPGRLPGWVCSDTHISPGTC-- 61
T S + S P +GG+ GP RS R P P R P LP C GT
Sbjct: 228 TLSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRP---LP---CESLRTPSGTAGP 281
Query: 62 -FPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYL 118
PAS P R P P R R G S + P PGP P L
Sbjct: 282 RSPASGPDARGAPTPGRAR---------------GGGASWSATPTTIPGPGPPRPQLL 324
Score = 27.7 bits (60), Expect = 2.7
Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 26/104 (25%)
Query: 51 CSDTHISPGTCFPASSPRERS--LPVPSRPRQKHHLAG---------SRSLDMLSAGNPS 99
C +SP +C S P L V +R + G S L SAG P
Sbjct: 183 CLCQRVSPASCPSRSCPSAAVFILAVAARSCSRRRRVGTSGPEASTLSSGLLTCSAGEPP 242
Query: 100 ST---------------PLPHRRPGPCSALPPYLPCAPPASPGA 128
+T P P RRP PC +L A P SP +
Sbjct: 243 TTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPAS 286
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 37.7 bits (86), Expect = 0.003
Identities = 37/118 (31%), Positives = 41/118 (34%), Gaps = 25/118 (21%)
Query: 5 TTSGRMEHISPQRPRNSGGRPPGPCSQRSGR-PTPGRSPPGRLPGWVCSDTHISPGTC-- 61
T S + S P +GG+ GP RS R P P R P LP C GT
Sbjct: 228 TLSSGLLTCSAGEPPTTGGKLTGPARLRSSRAPPPARRP---LP---CESLRTPSGTAGP 281
Query: 62 -FPASSPRERSLPVPSRPRQKHHLAGSRSLDMLSAGNPSSTPLPHRRPGPCSALPPYL 118
PAS P R P P R R G S + P PGP P L
Sbjct: 282 RSPASGPDARGAPTPGRAR---------------GGGASWSATPTTIPGPGPPRPQLL 324
Score = 27.7 bits (60), Expect = 2.7
Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 26/104 (25%)
Query: 51 CSDTHISPGTCFPASSPRERS--LPVPSRPRQKHHLAG---------SRSLDMLSAGNPS 99
C +SP +C S P L V +R + G S L SAG P
Sbjct: 183 CLCQRVSPASCPSRSCPSAAVFILAVAARSCSRRRRVGTSGPEASTLSSGLLTCSAGEPP 242
Query: 100 ST---------------PLPHRRPGPCSALPPYLPCAPPASPGA 128
+T P P RRP PC +L A P SP +
Sbjct: 243 TTGGKLTGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPAS 286
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,028,484
Number of Sequences: 37866
Number of extensions: 657114
Number of successful extensions: 4844
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 674
Number of HSP's that attempted gapping in prelim test: 3515
Number of HSP's gapped (non-prelim): 1801
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.