Guide to the Human Genome
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Name: LOC344382 Sequence: fasta or formatted (347aa) NCBI GI: 239747708
Description:

PREDICTED: similar to unr-interacting protein

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [348aa] PREDICTED: similar to unr-interacting protein
alt mRNA [347aa] PREDICTED: similar to unr-interacting protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         27           3
 C cysteine            1.2          4           1
 D aspartate           6.1         21           2
 E glutamate           7.5         26           3
 F phenylalanine       4.6         16           1
 G glycine             8.6         30           2
 H histidine           2.6          9           1
 I isoleucine          4.6         16           1
 K lysine              7.8         27           2
 L leucine             8.9         31           2
 M methionine          2.6          9           1
 N asparagine          2.0          7           1
 P proline             3.7         13           1
 Q glutamine           1.7          6           1
 R arginine            2.3          8           1
 S serine              7.5         26           2
 T threonine           8.4         29           2
 V valine              4.9         17           2
 W tryptophan          2.3          8           1
 Y tyrosine            4.9         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to unr-interacting protein [Homo... 
LOC344382             1.000   PREDICTED: similar to unr-interacting protein [Homo...
LOC344382             0.988   PREDICTED: similar to unr-interacting protein [Homo...
STRAP                 0.864   serine/threonine kinase receptor associated protein...
EIF3I                 0.070   eukaryotic translation initiation factor 3, subunit 2...
WDR51A                0.068   WD repeat domain 51A isoform 3 
WDR51A                0.068   WD repeat domain 51A isoform 2 
WDR51A                0.068   WD repeat domain 51A isoform 1 
SPAG16                0.065   sperm associated antigen 16 isoform 1 
PLRG1                 0.060   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
WDR51B                0.058   WD repeat domain 51B 
WDR69                 0.057   WD repeat domain 69 
APAF1                 0.055   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.055   apoptotic peptidase activating factor 1 isoform b [Ho...
WDR3                  0.051   WD repeat-containing protein 3 
WDR38                 0.051   WD repeat domain 38 
WDR5                  0.051   WD repeat domain 5 
WDR5                  0.051   WD repeat domain 5 
SNRNP40               0.049   WD repeat domain 57 (U5 snRNP specific) 
TAF5                  0.049   TBP-associated factor 5 
TAF5L                 0.049   PCAF associated factor 65 beta isoform a 
MORG1                 0.046   mitogen-activated protein kinase organizer 1 
MORG1                 0.046   mitogen-activated protein kinase organizer 1 
PAFAH1B1              0.044   platelet-activating factor acetylhydrolase, isoform I...
COPA                  0.042   coatomer protein complex, subunit alpha isoform 1 [...
COPA                  0.042   coatomer protein complex, subunit alpha isoform 2 [...
TEP1                  0.041   telomerase-associated protein 1 
KATNB1                0.039   katanin p80 subunit B 1 
WSB1                  0.039   WD repeat and SOCS box-containing 1 isoform 1 
BTRC                  0.038   beta-transducin repeat containing protein isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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