Guide to the Human Genome
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Name: LOC730254 Sequence: fasta or formatted (128aa) NCBI GI: 239747570
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {189aa} PREDICTED: hypothetical protein
alt prot {189aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         16           2
 C cysteine            4.7          6           2
 D aspartate           1.6          2           1
 E glutamate           4.7          6           2
 F phenylalanine       0.8          1           1
 G glycine            14.8         19           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              2.3          3           1
 L leucine            13.3         17           2
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline             9.4         12           1
 Q glutamine           1.6          2           1
 R arginine           18.8         24           3
 S serine              7.8         10           3
 T threonine           3.1          4           1
 V valine              2.3          3           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730254             0.328   PREDICTED: hypothetical protein 
LOC730254             0.328   PREDICTED: hypothetical protein 
LOC100293346          0.059   PREDICTED: hypothetical protein 
LOC643355             0.050   PREDICTED: hypothetical protein 
LOC643355             0.050   PREDICTED: hypothetical protein 
LOC643355             0.050   PREDICTED: hypothetical protein 
FNDC1                 0.034   fibronectin type III domain containing 1 
LOC100134360          0.029   PREDICTED: hypothetical protein 
BAHCC1                0.029   BAH domain and coiled-coil containing 1 
RNF169                0.029   ring finger protein 169 
LOC100293408          0.029   PREDICTED: hypothetical protein 
LOC100289362          0.029   PREDICTED: hypothetical protein 
LOC100289362          0.029   PREDICTED: hypothetical protein XP_002343719 
TNFRSF4               0.029   tumor necrosis factor receptor superfamily, member 4 ...
ZNF579                0.029   zinc finger protein 579 
LOC644280             0.025   PREDICTED: similar to hCG2041260 
LOC644280             0.025   PREDICTED: hypothetical protein 
LOC100289661          0.025   PREDICTED: hypothetical protein 
LOC100288108          0.025   PREDICTED: hypothetical protein 
LOC644280             0.025   PREDICTED: similar to hCG2041260 
LOC100289661          0.025   PREDICTED: hypothetical protein XP_002343723 
LOC100288108          0.025   PREDICTED: hypothetical protein XP_002342919 
PAK4                  0.025   p21-activated kinase 4 isoform 1 
PAK4                  0.025   p21-activated kinase 4 isoform 1 
PAK4                  0.025   p21-activated kinase 4 isoform 1 
HTRA3                 0.025   HtrA serine peptidase 3 
SREBF1                0.021   sterol regulatory element binding transcription fact...
SREBF1                0.021   sterol regulatory element binding transcription fact...
LOC100292370          0.021   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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