Guide to the Human Genome
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Name: LOC644280 Sequence: fasta or formatted (388aa) NCBI GI: 169214602
Description:

PREDICTED: similar to hCG2041260

Not currently referenced in the text

Other entries for this name:
alt mRNA {388aa} PREDICTED: hypothetical protein
alt prot {412aa} PREDICTED: similar to hCG2041260
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         36           2
 C cysteine            4.6         18           2
 D aspartate           2.3          9           1
 E glutamate           5.7         22           2
 F phenylalanine       2.3          9           1
 G glycine            15.7         61           3
 H histidine           3.1         12           1
 I isoleucine          1.8          7           1
 K lysine              2.6         10           1
 L leucine             8.8         34           2
 M methionine          1.3          5           1
 N asparagine          1.0          4           1
 P proline             4.6         18           2
 Q glutamine           5.7         22           2
 R arginine            9.5         37           3
 S serine              6.7         26           4
 T threonine           4.1         16           2
 V valine              5.9         23           2
 W tryptophan          3.4         13           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041260 
LOC644280             1.000   PREDICTED: hypothetical protein 
LOC644280             0.965   PREDICTED: similar to hCG2041260 
C8orf84               0.156   RPE-spondin 
MBD2                  0.015   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.015   methyl-CpG binding domain protein 2 isoform 1 
ADRA2C                0.013   alpha-2C-adrenergic receptor 
LOC728650             0.013   PREDICTED: hypothetical protein 
LOC100129463          0.013   PREDICTED: hypothetical protein 
LOC100129463          0.013   PREDICTED: hypothetical protein 
LOC100129463          0.013   PREDICTED: hypothetical protein 
LOC100129463          0.013   PREDICTED: hypothetical protein 
PLEKHH3               0.013   pleckstrin homology domain containing, family H (wit...
LOC100292062          0.013   PREDICTED: hypothetical protein XP_002346314 
LOC100292854          0.013   PREDICTED: hypothetical protein 
LOC100292383          0.013   PREDICTED: hypothetical protein 
LOC100290552          0.013   PREDICTED: hypothetical protein XP_002347697 
LOC100291403          0.013   PREDICTED: hypothetical protein XP_002347170 
LOC100288087          0.013   PREDICTED: hypothetical protein XP_002343063 
SART1                 0.013   squamous cell carcinoma antigen recognized by T cell...
SORCS1                0.011   SORCS receptor 1 isoform b 
SORCS1                0.011   SORCS receptor 1 isoform a 
LOC100293129          0.011   PREDICTED: hypothetical protein 
AVEN                  0.011   cell death regulator aven 
RSPO2                 0.010   R-spondin family, member 2 
LOC100292370          0.010   PREDICTED: hypothetical protein 
LOC100292262          0.010   PREDICTED: hypothetical protein 
LOC100293604          0.010   PREDICTED: hypothetical protein 
LOC728650             0.010   PREDICTED: hypothetical protein 
LOC100289721          0.010   PREDICTED: hypothetical protein XP_002347280 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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