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Search of human proteins with 239747324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747324 PREDICTED: hypothetical protein XP_002346440 [Homo
sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752795 PREDICTED: similar to transmembrane protein 125 [Ho... 297 2e-81
gi|239747324 PREDICTED: hypothetical protein XP_002346440 [Homo ... 297 2e-81
gi|239741149 PREDICTED: hypothetical protein XP_002342147 [Homo ... 297 2e-81
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 37 0.008
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 36 0.013
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.022
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 35 0.022
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 35 0.022
gi|169162893 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|91982772 mucin 17 [Homo sapiens] 35 0.029
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 35 0.029
gi|169172746 PREDICTED: hypothetical protein [Homo sapiens] 34 0.049
gi|26190608 synaptojanin 2 [Homo sapiens] 33 0.064
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.084
gi|4506879 selectin P ligand [Homo sapiens] 33 0.11
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|169210116 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 33 0.11
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.11
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.11
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 32 0.14
gi|116284392 mucin 2 precursor [Homo sapiens] 32 0.14
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 32 0.14
gi|151301154 mucin 6, gastric [Homo sapiens] 32 0.14
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.14
gi|164420691 homeodomain interacting protein kinase 2 isoform 2 ... 32 0.25
gi|164420685 homeodomain interacting protein kinase 2 isoform 1 ... 32 0.25
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 32 0.25
gi|92859670 solute carrier family 6 (neurotransmitter transporte... 32 0.25
gi|191252814 RIMS binding protein 3B [Homo sapiens] 31 0.32
>gi|239752795 PREDICTED: similar to transmembrane protein 125 [Homo
sapiens]
Length = 145
Score = 297 bits (761), Expect = 2e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS
Sbjct: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
Query: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER
Sbjct: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
Query: 121 RGCWDHHSSTCSASMSGGSPRPPGA 145
RGCWDHHSSTCSASMSGGSPRPPGA
Sbjct: 121 RGCWDHHSSTCSASMSGGSPRPPGA 145
>gi|239747324 PREDICTED: hypothetical protein XP_002346440 [Homo
sapiens]
Length = 145
Score = 297 bits (761), Expect = 2e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS
Sbjct: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
Query: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER
Sbjct: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
Query: 121 RGCWDHHSSTCSASMSGGSPRPPGA 145
RGCWDHHSSTCSASMSGGSPRPPGA
Sbjct: 121 RGCWDHHSSTCSASMSGGSPRPPGA 145
>gi|239741149 PREDICTED: hypothetical protein XP_002342147 [Homo
sapiens]
Length = 145
Score = 297 bits (761), Expect = 2e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS
Sbjct: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
Query: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER
Sbjct: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
Query: 121 RGCWDHHSSTCSASMSGGSPRPPGA 145
RGCWDHHSSTCSASMSGGSPRPPGA
Sbjct: 121 RGCWDHHSSTCSASMSGGSPRPPGA 145
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.6 bits (83), Expect = 0.008
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 17 AASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRAS 76
A SP + + S RP + T +S+PPP+R A+ R Q S + I R SR
Sbjct: 673 ARSPQPNKRHSPSPRPRAPQT-SSSPPPVRRGASSSPQRRQSPSPSTRPI---RRVSRTP 728
Query: 77 KQSTVPVASRHSPERLLVVDSSAT------PPAPQPATRPTATTKQSAERRGCWDHHSST 130
+ + A+ SP+ + V SS + P A +P P+ QS W
Sbjct: 729 EPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTN--WSPAVPV 786
Query: 131 CSASMSGGSPRPP 143
A SP PP
Sbjct: 787 KKAKSPTPSPSPP 799
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.013
Identities = 48/151 (31%), Positives = 58/151 (38%), Gaps = 20/151 (13%)
Query: 4 DSMAASGRAGAGAAASPA-RVRPVTSSTRPLSSTTRASAPPPLRSRATWWAW----RMQF 58
DS S R G +A PA RVR S S++T LRSR+T R
Sbjct: 305 DSAPGSARRGRDSAPGPALRVRTARSDAGHRSTSTTPGTG--LRSRSTQQRSALLSRRSL 362
Query: 59 MSCTAELISCFTRTSRASKQSTV-----PVASRHSPERLLVVDSSATPPAPQPATRPTAT 113
E SC T + R + QS V SR SP V A+ P+P P
Sbjct: 363 SGSADENPSCGTGSERLAFQSRSGSPDPEVPSRASPPVWHAVRMRASSPSP-PGRFFLPI 421
Query: 114 TKQSAERRGCWDHHSSTCSASMSGGSPRPPG 144
+Q WD SS+ AS S R PG
Sbjct: 422 PQQ-------WDESSSSSYASNSSSPSRSPG 445
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 35.0 bits (79), Expect = 0.022
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 3 TDSMAASGRAGAGAAASPARVRPVTSSTRPLSST------TRASAPPPLRSRATWWAWRM 56
T + S A + S ++ P+ T P S T A+ PPPL +
Sbjct: 740 TPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVP-----L 794
Query: 57 QFMSCTAELISCFTRTSRASKQSTVPVAS---RHSPERLLVVDSSATPPAPQPATRPTAT 113
S +A C + S A+ QS +P+ S SP + V+ + +P P T +++
Sbjct: 795 PAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSS 854
Query: 114 TKQSAERRGCWDHHSSTCSASMSGGSPRPP 143
+ S+ SS+ S+S S SP PP
Sbjct: 855 SSSSS---------SSSFSSSSSSSSPSPP 875
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 35.0 bits (79), Expect = 0.022
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 3 TDSMAASGRAGAGAAASPARVRPVTSSTRPLSST------TRASAPPPLRSRATWWAWRM 56
T + S A + S ++ P+ T P S T A+ PPPL +
Sbjct: 941 TPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVP-----L 995
Query: 57 QFMSCTAELISCFTRTSRASKQSTVPVAS---RHSPERLLVVDSSATPPAPQPATRPTAT 113
S +A C + S A+ QS +P+ S SP + V+ + +P P T +++
Sbjct: 996 PAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSS 1055
Query: 114 TKQSAERRGCWDHHSSTCSASMSGGSPRPP 143
+ S+ SS+ S+S S SP PP
Sbjct: 1056 SSSSS---------SSSFSSSSSSSSPSPP 1076
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 35.0 bits (79), Expect = 0.022
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 3 TDSMAASGRAGAGAAASPARVRPVTSSTRPLSST------TRASAPPPLRSRATWWAWRM 56
T + S A + S ++ P+ T P S T A+ PPPL +
Sbjct: 941 TPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVP-----L 995
Query: 57 QFMSCTAELISCFTRTSRASKQSTVPVAS---RHSPERLLVVDSSATPPAPQPATRPTAT 113
S +A C + S A+ QS +P+ S SP + V+ + +P P T +++
Sbjct: 996 PAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSS 1055
Query: 114 TKQSAERRGCWDHHSSTCSASMSGGSPRPP 143
+ S+ SS+ S+S S SP PP
Sbjct: 1056 SSSSS---------SSSFSSSSSSSSPSPP 1076
>gi|169162893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 34.7 bits (78), Expect = 0.029
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 4 DSMAASGRAGAGAAASPA---RVRPVTSSTRPLSSTTRASAPPPLRSR-ATWWAWRMQFM 59
DS S +SP+ R+ T+ P++S PPL R AT + +
Sbjct: 77 DSFILSATQARRLKSSPSPGNRIEGATNIQNPIAS-------PPLHPRPATHFC-----L 124
Query: 60 SCTAELIS--CF-TRTSRASKQSTVPVASRHSPERLLVVDSS-------------ATPPA 103
+C + L++ CF TS S+ +T + S S RLL+ S + PP+
Sbjct: 125 NCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLLCSHSIWRKTQSARVGRQSRPPS 184
Query: 104 PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
P ++ P A + QSA R G S ++ +S +PR
Sbjct: 185 PLTSSPPLALSTQSA-RDGQQSQPPSPLTSHLSPSAPR 221
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 34.7 bits (78), Expect = 0.029
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 20/139 (14%)
Query: 2 PTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSC 61
P S S A + AS PV S+T PL+++T AS+PPP
Sbjct: 984 PLTSTPVSHTLVANSEASTLSTTPVDSNT-PLTTSTEASSPPP----------------- 1025
Query: 62 TAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAERR 121
TAE S TS S+ ST S + ++S P + P T Q++
Sbjct: 1026 TAEGTS--MPTSTPSEGSTPLTRMPVSTTMVASSETSTLSTTPADTSTPVTTYSQASSSS 1083
Query: 122 GCWDHHSSTCSASMSGGSP 140
D S S G +P
Sbjct: 1084 TTADGTSMPTSTYSEGSTP 1102
Score = 33.5 bits (75), Expect = 0.064
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 2 PTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSC 61
P S+ S A + AS PV S+T PL+++T AS+ PP + S
Sbjct: 3223 PLTSVPVSNTPVASSEASILSTTPVDSNT-PLTTSTEASSSPPTAEGTSMPTSTPSEGST 3281
Query: 62 TAELISCFTRTSRASKQSTVPVASRHSPERLLVV-DSSATPPAPQPATRPTATTKQSA 118
+ T T +S+ ST+ + + +S++PP + PT+T + +
Sbjct: 3282 PLTSMPVSTTTVASSETSTLSTTPADTSTPVTTYSQASSSPPIADGTSMPTSTYSEGS 3339
Score = 32.7 bits (73), Expect = 0.11
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 20/139 (14%)
Query: 2 PTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSC 61
P S+ S A + S PV S+T P +++T AS+PPP
Sbjct: 2280 PLTSIPVSHTLVANSEVSTLSTTPVDSNT-PFTTSTEASSPPP----------------- 2321
Query: 62 TAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAERR 121
TAE S T TS S+ +T S + ++S P + P T Q+
Sbjct: 2322 TAEGTSMPTSTS--SEGNTPLTRMPVSTTMVASFETSTLSTTPADTSTPVTTYSQAGSSP 2379
Query: 122 GCWDHHSSTCSASMSGGSP 140
D S S G +P
Sbjct: 2380 TTADDTSMPTSTYSEGSTP 2398
Score = 31.6 bits (70), Expect = 0.25
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 1 MPTDSMAASGRAGAGAAASPARVR-PVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFM 59
MP +M + +A+P PVT+ST SSTT P + +
Sbjct: 3169 MPVSTMLVVSSEDSTLSATPVDTSTPVTTSTEATSSTTAEGTSIPTSTPSEGMT-----P 3223
Query: 60 SCTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSA 118
+ + + +S AS ST PV S + ++S++PP + + PT+T + +
Sbjct: 3224 LTSVPVSNTPVASSEASILSTTPVDS--NTPLTTSTEASSSPPTAEGTSMPTSTPSEGS 3280
Score = 31.2 bits (69), Expect = 0.32
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 2 PTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS- 60
P S+ S + AS P+ +ST +ST S+P + + + M+
Sbjct: 1750 PLTSIPVSTTPVLSSEASTLSATPIDTSTPVTTSTEATSSPTTAEGTSIPTSTLSEGMTP 1809
Query: 61 -CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAE 119
+ + S AS ST PV S +SP VV S+A +P PA + T +E
Sbjct: 1810 LTSTPVSHTLVANSEASTLSTTPVDS-NSP----VVTSTAVSSSPTPAEGTSIATSTPSE 1864
Score = 26.9 bits (58), Expect = 6.0
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 25 PVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCT--AELISCFTRTSRASKQSTVP 82
P ++ PL+ T ++AP R+ + CT A +S + ++ +T P
Sbjct: 3994 PAMTTAAPLTYVTMSTAPSTPRTTSR---------GCTTSASTLSATSTPHTSTSVTTRP 4044
Query: 83 VASRHSPERLLVVDSSATPPAPQPATRPTATTKQSA 118
V R + S PP PA T T ++
Sbjct: 4045 VTPSSESSRPSTITSHTIPPTFPPAHSSTPPTTSAS 4080
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 34.7 bits (78), Expect = 0.029
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 1 MPTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMS 60
+P + AA+ + + A++PA + S + P S T ASA P+ + A + S
Sbjct: 1819 VPASTSAAAITSSSAPASAPAPTPILASVSTPASVTILASASIPILASA------LASTS 1872
Query: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAER 120
+ + + T+P ++ + L +SA PAP P + P A+
Sbjct: 1873 APTPAPAASSPAAPVITAPTIPASAPTASVPLAPASASAPAPAPTPVSAPNPAPPAPAQT 1932
Query: 121 RGCWDHHSSTCSASMSGGSPRPP 143
+ + S S +PP
Sbjct: 1933 QAQTHKPVQNPLQTTSQSSKQPP 1955
>gi|169172746 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 33.9 bits (76), Expect = 0.049
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 4 DSMAASGRAGAGAAASPA---RVRPVTSSTRPLSSTTRASAPPPLRSR-ATWWAWRMQFM 59
DS S +SP+ R+ T+ P++S PPL R AT + +
Sbjct: 77 DSFILSATQARRLKSSPSPGNRIGGATNIQNPIAS-------PPLHPRPATHFC-----L 124
Query: 60 SCTAELIS--CF-TRTSRASKQSTVPVASRHSPERLLVVDSS-------------ATPPA 103
+C + L++ CF TS S+ +T + S S RLL+ S + PP+
Sbjct: 125 NCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLLYSHSIWRKTQSARVGRQSQPPS 184
Query: 104 PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
P ++ P A + QSA R G S ++ +S +PR
Sbjct: 185 PLTSSPPLALSTQSA-RDGQQSQPPSPLTSHLSPSAPR 221
>gi|26190608 synaptojanin 2 [Homo sapiens]
Length = 1496
Score = 33.5 bits (75), Expect = 0.064
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 2 PTDSMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSC 61
P+ AS A GA AS V P PL + PP R ++ A+ +Q +
Sbjct: 1301 PSHRKPASDEAPPGAGAS---VPP------PLEAPPLVPKVPPRRKKSAPAAFHLQVLQS 1351
Query: 62 TAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPP 102
++L+ T S S P A P+ + SSAT P
Sbjct: 1352 NSQLLQGLTYNSSDSPSGHPPAAGTVFPQGDFLSTSSATSP 1392
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.1 bits (74), Expect = 0.084
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 19 SPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQ 78
+P RP STRPL TT +S P + ++ T I TS ASK
Sbjct: 429 NPGMPRPPPPSTRPLPPTTSSSKKP------------IPTLARTEAKI-----TSHASKP 471
Query: 79 STVPVASRHSPERLLVVDSSATPPAPQPATRPTAT 113
++ ++ P + S A P +TRP AT
Sbjct: 472 ASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPAT 506
Score = 32.0 bits (71), Expect = 0.19
Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 32/157 (20%)
Query: 5 SMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPP----PLRSRATWWAWRMQFMS 60
S+ S R AAA P++ +T++ P S T+ SAP P++S
Sbjct: 340 SVGGSTRTPRPAAAQPSQ--KITATKIPKSLPTKPSAPSTSIVPIKSPHP--------TQ 389
Query: 61 CTAELISCFTRTSRASKQSTVPVASRHSPERLL------VVDSSATPPAPQPATRPTATT 114
TA S FT+++ + Q VP SR P R+ + + P P P+TRP T
Sbjct: 390 KTAP--SSFTKSALPT-QKQVPPTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPT 446
Query: 115 KQSAER---------RGCWDHHSSTCSASMSGGSPRP 142
S+++ H S SA S P P
Sbjct: 447 TSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPP 483
>gi|4506879 selectin P ligand [Homo sapiens]
Length = 402
Score = 32.7 bits (73), Expect = 0.11
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 14 AGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTS 73
A A R+ + T PL++T + PP T ++ + + T
Sbjct: 137 AATEAQTTRLTATEAQTTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAP 196
Query: 74 RASK-QSTVPVASRHSPERLLVVDSSATPPAPQPA--TRPTATTKQS 117
A + Q+T P A + +++ T P A T+PTAT Q+
Sbjct: 197 AAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATEAQTTQPTATEAQT 243
Score = 28.1 bits (61), Expect = 2.7
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 3 TDSMAASGRAGAGAAASPARVRPVTS----STRPLSSTTRASAPPPLRSRATWWAWRMQF 58
T +AA+ AA+ A+ T +T P + + +AP + ++ T A
Sbjct: 153 TTPLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQ 212
Query: 59 MSCTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQ 116
+ T + + T Q+T P A+ L +++ +T P+ A TTK+
Sbjct: 213 TTQTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKR 270
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 32.7 bits (73), Expect = 0.11
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 2 PTDSMAASG-RAGAGAAASPARVRPVTSSTRPLSSTTRASAPP--PLRSRATWWA-WRMQ 57
P +S+ G R G GA PAR RP A APP PL SRA W WR
Sbjct: 143 PCESVGVPGARPGRGAEGRPARRRP-------------APAPPLLPLPSRALWLGEWRRG 189
Query: 58 FMSCTAELISCFTR 71
+ + C+ R
Sbjct: 190 RLGTSRPEFKCYQR 203
>gi|169210116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 32.7 bits (73), Expect = 0.11
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 33/158 (20%)
Query: 4 DSMAASGRAGAGAAASPA---RVRPVTSSTRPLSSTTRASAPPPLRSR-ATWWAWRMQFM 59
DS S +SP+ R+ T+ P++S PPL R AT + +
Sbjct: 77 DSFILSATQARRLKSSPSPGNRIGGATNIQNPIAS-------PPLHPRPATHFC-----L 124
Query: 60 SCTAELIS--CF-TRTSRASKQSTVPVASRHSPERLLVVDSS-------------ATPPA 103
+C + L++ CF TS S+ +T + S S RLL S + PP+
Sbjct: 125 NCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPS 184
Query: 104 PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
P ++ P A + QSA R G S ++ +S +PR
Sbjct: 185 PLTSSPPLALSTQSA-RDGQQSQPPSPLTSHLSPSAPR 221
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 32.7 bits (73), Expect = 0.11
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 2 PTDSMAASG-RAGAGAAASPARVRPVTSSTRPLSSTTRASAPP--PLRSRATWWA-WRMQ 57
P +S+ G R G GA PAR RP A APP PL SRA W WR
Sbjct: 143 PCESVGVPGARPGRGAEGRPARRRP-------------APAPPLLPLPSRALWLGEWRRG 189
Query: 58 FMSCTAELISCFTR 71
+ + C+ R
Sbjct: 190 RLGTSRPEFKCYQR 203
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 32.7 bits (73), Expect = 0.11
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 32 PLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQSTVPVASRHSPER 91
P T + AP LR R++ + C LI+ T+ + +S + +S E
Sbjct: 4 PAEVTDPSHAPAVLRQLNEQ---RLRGLFCDVTLIAGDTKFP--AHRSVLAASSPFFREA 58
Query: 92 LLVVDSSATPPA-----PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPRP 142
LL PPA P PAT A++ S+ S++ S+S S SP P
Sbjct: 59 LLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPP 114
Score = 28.5 bits (62), Expect = 2.1
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 23/96 (23%)
Query: 16 AAASPA-RVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSR 74
AA+SP R +TS+ PL T +AP P + TA S + +S
Sbjct: 49 AASSPFFREALLTSAPLPLPPATGGAAPNPATT--------------TAASSSSSSSSSS 94
Query: 75 ASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRP 110
+S S+ +S S SS+ PPA PA+ P
Sbjct: 95 SSSSSSASSSSSSS--------SSSPPPASPPASSP 122
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 32.7 bits (73), Expect = 0.11
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 32 PLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQSTVPVASRHSPER 91
P T + AP LR R++ + C LI+ T+ + +S + +S E
Sbjct: 4 PAEVTDPSHAPAVLRQLNEQ---RLRGLFCDVTLIAGDTKFP--AHRSVLAASSPFFREA 58
Query: 92 LLVVDSSATPPA-----PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPRP 142
LL PPA P PAT A++ S+ S++ S+S S SP P
Sbjct: 59 LLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPP 114
Score = 28.5 bits (62), Expect = 2.1
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 23/96 (23%)
Query: 16 AAASPA-RVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSR 74
AA+SP R +TS+ PL T +AP P + TA S + +S
Sbjct: 49 AASSPFFREALLTSAPLPLPPATGGAAPNPATT--------------TAASSSSSSSSSS 94
Query: 75 ASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRP 110
+S S+ +S S SS+ PPA PA+ P
Sbjct: 95 SSSSSSASSSSSSS--------SSSPPPASPPASSP 122
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 32.3 bits (72), Expect = 0.14
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 30/134 (22%)
Query: 7 AASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPP----LRSRATW----------- 51
A GR + +P V P RP +ST R P P RSR
Sbjct: 1268 ATRGRKNRSSVKTPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVP 1327
Query: 52 WAWRMQFMSCTAELIS--CFTRTSRA--------SKQSTVPVASRHSPERLLVVDSSATP 101
A +Q + T + ++ +RT+R+ + +STVP+A P S+ P
Sbjct: 1328 TAPELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPS-----TSTEQP 1382
Query: 102 PAPQPATRPTATTK 115
P+P +R T K
Sbjct: 1383 VTPEPTSRATRGRK 1396
Score = 30.0 bits (66), Expect = 0.71
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 20/106 (18%)
Query: 5 SMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAE 64
S A GR + +P + P+ +P +S + P P SRAT C
Sbjct: 1553 SRATRGRTNRSSVKTPESIVPIAPELQPSTSRNQLVTPEP-TSRAT---------RC--- 1599
Query: 65 LISCFTRTSRASKQSTVPVA-SRHSPERLLVVDSSATPPAPQPATR 109
RT+R+S ++ PV + P D TP ATR
Sbjct: 1600 ------RTNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPKLTSRATR 1639
Score = 26.9 bits (58), Expect = 6.0
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 5 SMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAE 64
S A + + +P V P S P + T ++ P +
Sbjct: 1635 SRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQ-------------- 1680
Query: 65 LISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSA 118
++T R+S +PV + + + D P +P+P T+P+ +Q A
Sbjct: 1681 -----SKTLRSSTVRAMPVPTTPEFQSPVTTDQ---PISPEPITQPSCIKRQRA 1726
Score = 26.6 bits (57), Expect = 7.9
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 32/133 (24%)
Query: 5 SMAASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATW------------- 51
S A GR + +P V P +P +ST + P P S+AT
Sbjct: 1430 SQATRGRTNRSSVKTPETVVPTAPELQPSTSTDQPVTPEP-TSQATRGRTDRSSVKTPET 1488
Query: 52 ---WAWRMQFMSCTAELISC--FTRTSRASK--------QSTVPVASRHSPERLLVVDSS 98
A +Q + T + ++ +RT+R K ++ VP A P S+
Sbjct: 1489 VVPTAPELQASASTDQPVTSEPTSRTTRGRKNRSSVKTPETVVPAAPELQPS-----TST 1543
Query: 99 ATPPAPQPATRPT 111
P P+P +R T
Sbjct: 1544 DQPVTPEPTSRAT 1556
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 32.3 bits (72), Expect = 0.14
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 19 SPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQ 78
SP P +T P TT + PPP + + + + T L T + +
Sbjct: 1471 SPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTT 1530
Query: 79 STVPVASRHSPERLLVV----DSSATPPAPQPATRPTATT 114
+T P + SP + ++ PP P+ PT TT
Sbjct: 1531 TTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTT 1570
Score = 30.0 bits (66), Expect = 0.71
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 25 PVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQSTVPVA 84
P+T++T P S+TT +PPP M S T T + + +T+P
Sbjct: 1708 PITTTTTPSSTTT--PSPPPTT---------MTTPSPTT------TPSPPTTTMTTLPPT 1750
Query: 85 SRHSPERLLVVDSSATPPAPQPATRPTATT 114
+ SP + S TPP P + T TT
Sbjct: 1751 TTSSPLTTTPLPPSITPPTFSPFSTTTPTT 1780
Score = 28.1 bits (61), Expect = 2.7
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 19 SPARVRPVT--SSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRAS 76
SP P+T +ST L TT S PP + + T + T T +
Sbjct: 1540 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPT 1599
Query: 77 KQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATT 114
+ P + +P ++ +PP P T PT+TT
Sbjct: 1600 TTPSPPTTTTTTPPPT----TTPSPPTTTPITPPTSTT 1633
Score = 26.6 bits (57), Expect = 7.9
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 25 PVTSSTRPLSST----TRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQST 80
P T++T P ++T T + PP+ + T + + I+ + +
Sbjct: 1645 PTTTTTPPPTTTPSPPTTTTPSPPITTTTT-----PPPTTTPSSPITTTPSPPTTTMTTP 1699
Query: 81 VPVASRHSPERLLVVDSSATPPAPQPA--TRPTATTKQSAERRGCWDHHSSTCSASMSGG 138
P + SP SS T P+P P T P+ TT S +T S+ ++
Sbjct: 1700 SPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLT-T 1758
Query: 139 SPRPP 143
+P PP
Sbjct: 1759 TPLPP 1763
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 32.3 bits (72), Expect = 0.14
Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 41/156 (26%)
Query: 7 AASGRAGAGAAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELI 66
A+ G GA A A+ A RPV+ + PLS P P+R+ + R +S
Sbjct: 364 ASEGDGGAAAGAAAAGARPVSVAGSPLS-------PGPVRAPLS----RSHTLSGGC--- 409
Query: 67 SCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAERRGCWD- 125
R SK + +P R + + + +PPA AT P + + S G +
Sbjct: 410 -----GGRGSKVALLPAGGALQHSRSMSMPVAHSPPA---ATSPGSLSSSSGHGSGSYPP 461
Query: 126 ------------HHS-----STCSASMSGGSPRPPG 144
HH S+ SAS S GSP PG
Sbjct: 462 PPGPHPPLPHPLHHGPGQRPSSGSASAS-GSPSDPG 496
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.3 bits (72), Expect = 0.14
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 25/165 (15%)
Query: 1 MPTDSMAASGRAGAGAAASPAR-VRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFM 59
+P ++ A +G P V P +S P ++T R++A P ++AT A
Sbjct: 1255 LPATLTSSKPTASSGEPPRPTTAVTPQATSGLPPTATLRSTATKPTVTQATTRATASTAS 1314
Query: 60 SCTAELISCFTRTSRA----SKQSTVPVASRHSPERLLVVDSSAT------------PPA 103
T TRT+ + T P + + + L ++ T P
Sbjct: 1315 PATTSTAQSTTRTTMTLPTPATSGTSPTLPKSTNQELPGTTATQTTGPRPTPASTTGPTT 1374
Query: 104 PQPA--TRPTAT----TKQSAERRGCWDHHSSTCSASMSGGSPRP 142
PQP TRPTAT T+ + E H T + + GSP P
Sbjct: 1375 PQPGQPTRPTATETTQTRTTTEYTTPQTPH--TTHSPPTAGSPVP 1417
Score = 26.9 bits (58), Expect = 6.0
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 19 SPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQ 78
+P + TS++ + S + PPP +AT M+ T S + +K
Sbjct: 1633 TPTHAQMATSAS--IHSMPTGTIPPPTTLKATGSTHTAPTMTLTTSGTSQALSSLNTAKT 1690
Query: 79 ST---VPVASRHSPERLLVVDSSATPPAPQPATRP-TATTKQSAERRGCWDHHSSTCSAS 134
ST +S H E ++ TP T P T TT +++ R + ++ S
Sbjct: 1691 STSLHSHTSSTHHAEATSTSTTNITPNPTSTGTPPMTVTTSGTSQSRSSFSTAKTSTSLH 1750
Query: 135 MSGGSPRPP 143
S P
Sbjct: 1751 SHTSSTHHP 1759
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 32.3 bits (72), Expect = 0.14
Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 9/150 (6%)
Query: 2 PTDSMAASGRAGAGAAAS------PARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWR 55
P+ S G A A + +S P + P +S L+ST + P L + +
Sbjct: 1500 PSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPF 1559
Query: 56 MQFMSCTAELISCFTRTSRASKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPT---A 112
+ S S AS+ P+A +P+ ++ S A P AP P P+ A
Sbjct: 1560 PSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAA 1619
Query: 113 TTKQSAERRGCWDHHSSTCSASMSGGSPRP 142
S++ SST S++ SP P
Sbjct: 1620 PVLASSQTPVPVMAPSSTPGTSLASASPVP 1649
>gi|164420691 homeodomain interacting protein kinase 2 isoform 2
[Homo sapiens]
Length = 1171
Score = 31.6 bits (70), Expect = 0.25
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 16 AAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRA 75
A +SP R + V +T P + +S P S + W + T+R
Sbjct: 797 AISSPQRSKRVKENTPPRCAMVHSS---PACSTSVTCGWG-----------DVASSTTRE 842
Query: 76 SKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTAT-TKQSAERRGCWDHHSSTCSAS 134
++ T+ + SP ++ SS T + PT+T +KQ C H S S S
Sbjct: 843 RQRQTIVIPDTPSPTVSVITISSDTDEEEEQKHAPTSTVSKQRKNVISCVTVHDSPYSDS 902
Query: 135 MSGGSP 140
S SP
Sbjct: 903 SSNTSP 908
>gi|164420685 homeodomain interacting protein kinase 2 isoform 1
[Homo sapiens]
Length = 1198
Score = 31.6 bits (70), Expect = 0.25
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 16 AAASPARVRPVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRA 75
A +SP R + V +T P + +S P S + W + T+R
Sbjct: 824 AISSPQRSKRVKENTPPRCAMVHSS---PACSTSVTCGWG-----------DVASSTTRE 869
Query: 76 SKQSTVPVASRHSPERLLVVDSSATPPAPQPATRPTAT-TKQSAERRGCWDHHSSTCSAS 134
++ T+ + SP ++ SS T + PT+T +KQ C H S S S
Sbjct: 870 RQRQTIVIPDTPSPTVSVITISSDTDEEEEQKHAPTSTVSKQRKNVISCVTVHDSPYSDS 929
Query: 135 MSGGSP 140
S SP
Sbjct: 930 SSNTSP 935
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 31.6 bits (70), Expect = 0.25
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 25 PVTSSTRPLSSTTRASAPPPLRSRATWWAWRMQFMSCTAELISCFTRTSRASKQSTVPVA 84
PVTS+ ST A P +S ++W R + T+ + T T+ A ST
Sbjct: 1848 PVTSTPVTAPSTPSGRAISPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTYAHTTSTTSAP 1907
Query: 85 SRHSPERLLVVDSSATP------PAPQPATRPTATTKQSAERRGCWDHHSSTCSASMSGG 138
+ + +SA+P P P+ PT +T + +ST SA S
Sbjct: 1908 TARTTSAPTTRTTSASPASTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTTSAPTSST 1967
Query: 139 SPRP 142
+ P
Sbjct: 1968 TSAP 1971
>gi|92859670 solute carrier family 6 (neurotransmitter transporter,
glycine), member 5 [Homo sapiens]
Length = 797
Score = 31.6 bits (70), Expect = 0.25
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 82 PVASRHSPERLLVVDSSATPPAPQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
P A R SPE+ L ++ PP + A T QSA+ R C S +S SPR
Sbjct: 29 PCAPRTSPEQELPAAAAPPPPRVPRSASTGAQTFQSADARACEAERPGVGSCKLS--SPR 86
Query: 142 PPGA 145
A
Sbjct: 87 AQAA 90
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 31.2 bits (69), Expect = 0.32
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 59 MSCTAELISCFTRTSRASKQST--VPVASRHSPERLLVVDSS-------ATPPAPQPATR 109
+S A + CF S ST +P AS+ S ER D+S + PP+P P
Sbjct: 278 LSTHASSLDCFAPACSRSLDSTRSLPKASK-SEERPSSPDTSTPGSRRLSPPPSPLPPPP 336
Query: 110 PTATTKQSAERRGCWDHHSSTCSASMSGGSPRPPG 144
P + ++ + RG S C +P PPG
Sbjct: 337 PPSAHRKLSNPRGGEGSESQPCEVL----TPSPPG 367
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.119 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,842,826
Number of Sequences: 37866
Number of extensions: 321922
Number of successful extensions: 2700
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 2442
Number of HSP's gapped (non-prelim): 428
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.