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Search of human proteins with 239747278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747278 PREDICTED: hypothetical protein XP_002346415 [Homo
sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752740 PREDICTED: hypothetical protein [Homo sapiens] 160 2e-40
gi|239747278 PREDICTED: hypothetical protein XP_002346415 [Homo ... 160 2e-40
gi|239741102 PREDICTED: hypothetical protein XP_002342090 [Homo ... 160 2e-40
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 32 0.14
gi|239757244 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ... 30 0.32
gi|57222570 codanin 1 [Homo sapiens] 30 0.32
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho... 30 0.42
gi|65301115 C1q and tumor necrosis factor related protein 9 [Hom... 30 0.42
gi|51593088 neuroligin 3 [Homo sapiens] 30 0.55
gi|194272140 dendrin [Homo sapiens] 29 0.72
gi|22779860 forkhead box L1 [Homo sapiens] 29 0.94
gi|4758410 fragile X mental retardation syndrome related protein... 29 0.94
gi|239751752 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239746252 PREDICTED: hypothetical protein XP_002343716 [Homo ... 28 1.2
gi|148613882 homeobox A4 [Homo sapiens] 28 1.6
gi|78482617 general transcription factor IIIC, polypeptide 2, be... 28 1.6
gi|4504205 general transcription factor IIIC, polypeptide 2, bet... 28 1.6
gi|32698752 hypothetical protein LOC63939 [Homo sapiens] 28 1.6
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 28 2.1
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 28 2.1
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 27 2.7
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 2.7
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 2.7
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 27 2.7
gi|61743978 stabilin 1 precursor [Homo sapiens] 27 2.7
gi|42263098 Sp6 transcription factor [Homo sapiens] 27 2.7
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 27 2.7
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 27 2.7
>gi|239752740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 160 bits (406), Expect = 2e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE 60
MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE
Sbjct: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE 60
Query: 61 AVGGKTRRVRASSSD 75
AVGGKTRRVRASSSD
Sbjct: 61 AVGGKTRRVRASSSD 75
>gi|239747278 PREDICTED: hypothetical protein XP_002346415 [Homo
sapiens]
Length = 75
Score = 160 bits (406), Expect = 2e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE 60
MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE
Sbjct: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE 60
Query: 61 AVGGKTRRVRASSSD 75
AVGGKTRRVRASSSD
Sbjct: 61 AVGGKTRRVRASSSD 75
>gi|239741102 PREDICTED: hypothetical protein XP_002342090 [Homo
sapiens]
Length = 75
Score = 160 bits (406), Expect = 2e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE 60
MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE
Sbjct: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLE 60
Query: 61 AVGGKTRRVRASSSD 75
AVGGKTRRVRASSSD
Sbjct: 61 AVGGKTRRVRASSSD 75
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 6 PPIT--AQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
PP+ AAL P E+G +P G R C + L P GL P PP
Sbjct: 203 PPVVQPVPPAALSGPSGEEGLSPGGKRRRGCNSEQTGL-PPGLPLPPPP 250
>gi|239757244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 1 MGPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
MG P TA+++ P++ G + G+R R G GL GPAPP
Sbjct: 1 MGSGRPRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPG--GEGGLSGPAPP 50
>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
Length = 305
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 23 GAAPAGSRPSHCRGGLS--ELGPTGLEGPAPPCHIHHHLEAVGGKTRRVRASSS 74
G+AP G PS C GG ++ + ++G C HH A K + +A+SS
Sbjct: 222 GSAPRGHSPSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASS 275
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 5 YPPITAQSAALRSPKREKGAAPAGSRPSHCRG--GLSELGPTGLEGPAPPCHIHHHLEAV 62
+PP AQS A +P +G G P+ RG GL E G+ G + P
Sbjct: 101 FPPTEAQSTAAEAPLARRGGRRRGPGPARERGGRGLEE----GVSGESLP---------- 146
Query: 63 GGKTRRVRASSS 74
G RR+R S S
Sbjct: 147 GAGGRRLRGSGS 158
>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
sapiens]
Length = 333
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 18 PKREKG----AAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
P+ +KG P G P RG + LGPTGL GP P
Sbjct: 120 PQGQKGNKGDVGPTG--PEGPRGNIGPLGPTGLPGPMGP 156
>gi|65301115 C1q and tumor necrosis factor related protein 9 [Homo
sapiens]
Length = 333
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 18 PKREKG----AAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
P+ +KG P G P RG + LGPTGL GP P
Sbjct: 120 PQGQKGNKGDVGPTG--PEGPRGNIGPLGPTGLPGPMGP 156
>gi|51593088 neuroligin 3 [Homo sapiens]
Length = 828
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 17 SPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLEAVGGKTRRVRASSSD 75
SP+R GA G+ P L +LGPT E A P H L A+ T +R S D
Sbjct: 725 SPQRGAGAPELGAAPEEELAAL-QLGPTHHECEAGPPHDTLRLTALPDYTLTLRRSPDD 782
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 3 PFYPPITAQSAALRSPKREKGAAPAGSRPS-----HCRGGLSELGPTGLEGPAPPCHIHH 57
P P AQ A L +P R + AP G P G + GP G P PP + H
Sbjct: 147 PRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYEAH 206
Query: 58 HL 59
L
Sbjct: 207 LL 208
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 28.9 bits (63), Expect = 0.94
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 9 TAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGL-EGPAPPCHIH 56
T Q +A P E G+ GS P+ R + GP+ L +GP+PP +H
Sbjct: 161 THQRSAEAQP--EAGSGAGGSGPAISRLQAAPAGPSPLLDGPSPPAPLH 207
>gi|4758410 fragile X mental retardation syndrome related protein 2
[Homo sapiens]
Length = 673
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 2 GPFYPPITAQSAA--LRSPKREK-GAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
GP Y P + S A S KRE+ A G R RG S PTG G PP
Sbjct: 440 GPAYGPSSDVSTASETESEKREEPNRAGPGDRDPPTRGEESRRRPTGGRGRGPP 493
>gi|239751752 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 6 PPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
P TA+++ P++ G + G+R R G GL GPAPP
Sbjct: 27 PRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPG--GEGGLSGPAPP 71
>gi|239746252 PREDICTED: hypothetical protein XP_002343716 [Homo
sapiens]
Length = 211
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 6 PPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
P TA+++ P++ G + G+R R G GL GPAPP
Sbjct: 27 PRGTARTSRQPDPRQAAGGSDGGTRARRIRAHPG--GEGGLSGPAPP 71
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 6 PPITAQSAALRSPKREKGA-----APAGSRPSHCRGGLSELGPTGLEGPAP---PCHIHH 57
PP+ ++ +P+R + A PAG C L++ P GL+G P P
Sbjct: 142 PPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKI 201
Query: 58 HLEAV-----GGKTRRVRAS 72
H+ AV GG+ +R R +
Sbjct: 202 HVSAVNPSYNGGEPKRSRTA 221
>gi|78482617 general transcription factor IIIC, polypeptide 2, beta
110kDa [Homo sapiens]
Length = 911
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 17 SPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
S + K + P S+P RGG + GP + P PP
Sbjct: 85 SSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP 120
>gi|4504205 general transcription factor IIIC, polypeptide 2, beta
110kDa [Homo sapiens]
Length = 911
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 17 SPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
S + K + P S+P RGG + GP + P PP
Sbjct: 85 SSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPP 120
>gi|32698752 hypothetical protein LOC63939 [Homo sapiens]
Length = 383
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 6 PPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPT 44
P S AL+SP R K A A S+P + G S+ GP+
Sbjct: 209 PTAPGTSGALKSPGRSKLIASALSKPLPHQEGASKSGPS 247
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 15 LRSPKREKGAAPAGSRP-SHCRGGLSELGPTGLEGPAPP 52
LR P KG PA RP C GL L T + PA P
Sbjct: 135 LRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAP 173
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 15 LRSPKREKGAAPAGSRP-SHCRGGLSELGPTGLEGPAPP 52
LR P KG PA RP C GL L T + PA P
Sbjct: 135 LRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAP 173
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 15 LRSPKREKGAAPAGSRP-SHCRGGLSELGPTGLEGPAPP 52
LR P KG PA RP C GL L T + PA P
Sbjct: 135 LRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRFPAAP 173
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 24 AAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHL 59
AA P CRGG + GP+ L+G PC HL
Sbjct: 100 AASFPQLPLDCRGGPRD-GPSNLQGSPGPCLASLHL 134
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 2 GPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
GP PP + S+ L P ++ A S P RG + GP G +PP
Sbjct: 610 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRG--YDSGPEGGAAASPP 658
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 2 GPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
GP PP + S+ L P ++ A S P RG + GP G +PP
Sbjct: 879 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRG--YDSGPEGGAAASPP 927
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 2 GPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPP 52
GP PP + S+ L P ++ A S P RG + GP G +PP
Sbjct: 571 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRG--YDSGPEGGAAASPP 619
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 21 EKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHHLEAVGGKTR 67
++G G C + + GPTGL A CH+H + G R
Sbjct: 802 QQGTCAPGFSGRFCNESMGDCGPTGL---AQHCHLHARCVSQEGVAR 845
>gi|42263098 Sp6 transcription factor [Homo sapiens]
Length = 376
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 22 KGAAPAGSRPSHCRGGLSE-LGPTGLEGPAPPCHIHHHLEAVGGK 65
+GA + P + GL +G L P P H HH L A GG+
Sbjct: 136 QGALTSPGHPGALQAGLGGYVGDHQLCAPPPHPHAHHLLPAAGGQ 180
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 2 GPFYPPITAQSAALRSPKREKGAAPAGSRPSHCRGGLSELGPTGLEGPAPPCHIHHH 58
GPF P A SP G +P +R L GP PP H HHH
Sbjct: 952 GPFNPGSGGPLPA-SSPASFDGPSPPDTRVGSREKSLYHSGPLPPAHHHPPHHHHHH 1007
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 19 KREKGAAPAGSRPSHCRGGLSELGPTG-------LEGPAPPCHIHHH 58
KR AA AG P ELGP G P PP +HHH
Sbjct: 395 KRMTPAAGAGHPPMDDVYAPGELGPGGGGASPPSAPPPPPPAALHHH 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,833,201
Number of Sequences: 37866
Number of extensions: 184978
Number of successful extensions: 916
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 111
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.