Guide to the Human Genome
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Name: NLGN3 Sequence: fasta or formatted (828aa) NCBI GI: 51593088
Description:

neuroligin 3

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         60           2
 C cysteine            1.1          9           1
 D aspartate           6.5         54           2
 E glutamate           4.6         38           3
 F phenylalanine       3.7         31           2
 G glycine             7.5         62           2
 H histidine           3.3         27           2
 I isoleucine          3.9         32           2
 K lysine              3.6         30           2
 L leucine             9.4         78           2
 M methionine          1.9         16           1
 N asparagine          4.3         36           1
 P proline             8.5         70           3
 Q glutamine           3.3         27           1
 R arginine            4.6         38           2
 S serine              6.4         53           2
 T threonine           6.9         57           3
 V valine              7.4         61           2
 W tryptophan          1.7         14           1
 Y tyrosine            4.2         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuroligin 3 
NLGN4X                0.712   X-linked neuroligin 4 
NLGN4X                0.712   X-linked neuroligin 4 
NLGN4Y                0.701   neuroligin 4, Y-linked 
NLGN1                 0.647   neuroligin 1 
NLGN2                 0.609   neuroligin 2 
ACHE                  0.176   acetylcholinesterase isoform E4-E6 precursor 
ACHE                  0.175   acetylcholinesterase isoform E4-E5 precursor 
BCHE                  0.166   butyrylcholinesterase precursor 
CES1                  0.158   carboxylesterase 1 isoform a precursor 
CES1                  0.158   carboxylesterase 1 isoform c precursor 
CES1                  0.158   carboxylesterase 1 isoform b precursor 
CES2                  0.155   carboxylesterase 2 isoform 1 
CES7                  0.155   carboxylesterase 7 isoform 1 
CEL                   0.154   carboxyl ester lipase precursor 
CES3                  0.154   carboxylesterase 3 
CES2                  0.145   carboxylesterase 2 isoform 2 
CES7                  0.126   carboxylesterase 7 isoform 2 
CES8                  0.123   carboxylesterase 8 (putative) 
TG                    0.099   thyroglobulin 
LOC649264             0.074   PREDICTED: similar to hCG40360 
LOC649264             0.074   PREDICTED: similar to hCG40360 
LOC649264             0.040   PREDICTED: similar to hCG40360 
CASKIN1               0.005   CASK interacting protein 1 
AHRR                  0.005   arylhydrocarbon receptor repressor 
SMR3B                 0.005   submaxillary gland androgen regulated protein 3 homol...
MUC2                  0.004   mucin 2 precursor 
CD93                  0.004   CD93 antigen precursor 
RC3H1                 0.004   roquin 
RYR1                  0.004   skeletal muscle ryanodine receptor isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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