Guide to the Human Genome
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Search of human proteins with 239747249

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747249 PREDICTED: hypothetical protein [Homo sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747249 PREDICTED: hypothetical protein [Homo sapiens]           411   e-115
gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo ...   408   e-114
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap...    35   0.057
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    33   0.22 
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    33   0.22 
gi|171906569 seipin isoform 1 [Homo sapiens]                           33   0.22 
gi|195230753 seipin isoform 1 [Homo sapiens]                           33   0.22 
gi|40068505 seipin isoform 2 [Homo sapiens]                            33   0.22 
gi|167234419 thyroid hormone receptor associated protein 3 [Homo...    32   0.28 
gi|113430055 PREDICTED: similar to cancer/testis antigen family ...    32   0.48 
gi|42794622 zinc finger protein 784 [Homo sapiens]                     32   0.48 
gi|24497501 forkhead box A1 [Homo sapiens]                             30   1.1  
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    30   1.1  
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi...    30   1.1  
gi|13899229 nuclear factor of kappa light polypeptide gene enhan...    30   1.4  
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]            30   1.8  
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ...    30   1.8  
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ...    30   1.8  
gi|153266792 adenylate cyclase activating polypeptide precursor ...    29   2.4  
gi|153266795 adenylate cyclase activating polypeptide precursor ...    29   2.4  
gi|239746922 PREDICTED: similar to cancer/testis antigen family ...    29   2.4  
gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo sap...    29   2.4  
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    29   2.4  
gi|7657013 apoptosis antagonizing transcription factor [Homo sap...    29   2.4  
gi|22749479 canopy 4 homolog [Homo sapiens]                            29   2.4  
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom...    29   2.4  
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom...    29   2.4  
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I...    29   2.4  
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I...    29   2.4  

>gi|239747249 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score =  411 bits (1056), Expect = e-115
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALRQGTWIGL 60
           MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALRQGTWIGL
Sbjct: 1   MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALRQGTWIGL 60

Query: 61  IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120
           IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE
Sbjct: 61  IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120

Query: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180
           EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG
Sbjct: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180

Query: 181 LCRLAGRESVFGVSGSGCQWQA 202
           LCRLAGRESVFGVSGSGCQWQA
Sbjct: 181 LCRLAGRESVFGVSGSGCQWQA 202


>gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo
           sapiens]
          Length = 202

 Score =  408 bits (1049), Expect = e-114
 Identities = 201/202 (99%), Positives = 201/202 (99%)

Query: 1   MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALRQGTWIGL 60
           MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAAL QGTWIGL
Sbjct: 1   MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQGTWIGL 60

Query: 61  IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120
           IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE
Sbjct: 61  IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120

Query: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180
           EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG
Sbjct: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180

Query: 181 LCRLAGRESVFGVSGSGCQWQA 202
           LCRLAGRESVFGVSGSGCQWQA
Sbjct: 181 LCRLAGRESVFGVSGSGCQWQA 202


>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
           sapiens]
          Length = 666

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 101 EWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGS 160
           E +G E N+E PG   A + EE  G+P  G  +          +P +RST A       +
Sbjct: 97  EDAGAESNEEAPGEPSAGSSEEAPGEPSAGSSEE---------APGERSTSASA---EAA 144

Query: 161 PPPPAGSSASLPHFPATAWG 180
           P  PA   A+ P  P    G
Sbjct: 145 PDGPALEEAAGPLVPGLVLG 164


>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 214

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 3   PRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLA 50
           P LH + A    G     +GGL G GAA G  G   +  SC +G G A
Sbjct: 156 PGLHPSAAAPGVGGRASGAGGLLGEGAAGG--GGAHLRHSCSTGRGSA 201


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 159 GSPPPPAGSSASLPHFPATAWGLCRLAGRESVFG 192
           G+PPPP   +A    FP   WG+  L+G + +FG
Sbjct: 131 GAPPPPLFDAA----FPTPQWGIVDLSGHQHLFG 160


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 159 GSPPPPAGSSASLPHFPATAWGLCRLAGRESVFG 192
           G+PPPP   +A    FP   WG+  L+G + +FG
Sbjct: 131 GAPPPPLFDAA----FPTPQWGIVDLSGHQHLFG 160


>gi|171906569 seipin isoform 1 [Homo sapiens]
          Length = 462

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 88  RDSINRSTESVQDE--WSGREENDEKPGTQGATAEEEIQGDPRGGRG---DAVAALGCGV 142
           +  +    ES +D     G+   +EKP  Q  + EEE++ +   G G   DA       +
Sbjct: 368 QSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAALLTEANL 427

Query: 143 VSPLQRSTLAVVVVFRGSPPPPAGSSASLP 172
            +P   S  A V+   GS  P  G+    P
Sbjct: 428 PAPAPASASAPVLETLGSSEPAGGALRQRP 457


>gi|195230753 seipin isoform 1 [Homo sapiens]
          Length = 462

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 88  RDSINRSTESVQDE--WSGREENDEKPGTQGATAEEEIQGDPRGGRG---DAVAALGCGV 142
           +  +    ES +D     G+   +EKP  Q  + EEE++ +   G G   DA       +
Sbjct: 368 QSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAALLTEANL 427

Query: 143 VSPLQRSTLAVVVVFRGSPPPPAGSSASLP 172
            +P   S  A V+   GS  P  G+    P
Sbjct: 428 PAPAPASASAPVLETLGSSEPAGGALRQRP 457


>gi|40068505 seipin isoform 2 [Homo sapiens]
          Length = 398

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 88  RDSINRSTESVQDE--WSGREENDEKPGTQGATAEEEIQGDPRGGRG---DAVAALGCGV 142
           +  +    ES +D     G+   +EKP  Q  + EEE++ +   G G   DA       +
Sbjct: 304 QSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAALLTEANL 363

Query: 143 VSPLQRSTLAVVVVFRGSPPPPAGSSASLP 172
            +P   S  A V+   GS  P  G+    P
Sbjct: 364 PAPAPASASAPVLETLGSSEPAGGALRQRP 393


>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
           sapiens]
          Length = 955

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 24/81 (29%), Positives = 31/81 (38%)

Query: 92  NRSTESVQDEWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALGCGVVSPLQRSTL 151
           N+  E+ +  +SG    D K         +   G     R  AV+ L     SP  +S L
Sbjct: 196 NQGDEAKEQTFSGGTSQDTKASESSKPWPDATYGTGSASRASAVSELSPRERSPALKSPL 255

Query: 152 AVVVVFRGSPPPPAGSSASLP 172
             VVV R SP P      S P
Sbjct: 256 QSVVVRRRSPRPSPVPKPSPP 276


>gi|113430055 PREDICTED: similar to cancer/testis antigen family
           147, member B1 isoform 1 [Homo sapiens]
          Length = 284

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 22  GGLNGRGAAAGPAGSRR-----------VGESCFSGEGLAALRQGTWIGLIIRLDVDLAL 70
           G L  R   A P+GS             VG +   GEGL  L++     L+   +V   L
Sbjct: 140 GRLMRRRRTAAPSGSEEPRLLLVHERLGVGAAGPEGEGLGLLQEAA---LVPEPEVPADL 196

Query: 71  GQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAEEEI 123
            +  RE   +  +  +  ++   + E  ++E +  EE+ E+P T+ A A EE+
Sbjct: 197 AEMAREPAEEPAEEELAEEA---AEEPAKEEPAAEEESAEEPATEEAAAPEEV 246


>gi|42794622 zinc finger protein 784 [Homo sapiens]
          Length = 323

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 18/48 (37%), Positives = 20/48 (41%)

Query: 4   RLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAA 51
           R H     H PG  +G SGG  G  AA G      VG+    G G  A
Sbjct: 268 RKHQRTHFHGPGPGLGDSGGQLGSSAAEGSGSGCGVGDPAEEGRGETA 315


>gi|24497501 forkhead box A1 [Homo sapiens]
          Length = 472

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 109 DEKPGTQGATAEEEIQGDPRGG---RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPP-P 164
           +++PG  G           +GG   R D   A      SPL R          G+P P P
Sbjct: 269 EKQPGAGGGGGSGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEGAPAPGP 328

Query: 165 AGSSASLPHFPATAWG 180
           A S  +L H  ATA G
Sbjct: 329 AASPQTLDHSGATATG 344


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 101  EWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALGCG----VVSPLQRSTLAVVVV 156
            E  G E  DE   ++ +T          G  G A A  G        +P   ST+A  + 
Sbjct: 2844 EEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAPAGLPSNPLAFNPFLLSTMAPGLF 2903

Query: 157  FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESVFGVS 194
            +     PP     +LP FPA       LAG ++  G S
Sbjct: 2904 YPSMFLPPGLGGLTLPGFPA-------LAGLQNAVGSS 2934


>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
          Length = 1343

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 127  PRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWGLCR--- 183
            P GG G      G G   PLQR     + V     P P  SS +L   P  ++G  R   
Sbjct: 1049 PGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKPRP--SSGNLLQSPEPSYGPARPRQ 1106

Query: 184  --LAGRESVFGVSGSG 197
              L+   S+ G  GSG
Sbjct: 1107 QSLSKEGSIGGSGGSG 1122



 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 122 EIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWGL 181
           ++QGD  GGR ++ +      V  L  S+ A +    G  P PAG  +       TA G+
Sbjct: 845 DLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTAALGLRPAPAGRLSQGSGSSITAAGM 904

Query: 182 CRLAGRESVFGVSGSG 197
                R S  GV+  G
Sbjct: 905 -----RLSQMGVTTDG 915


>gi|13899229 nuclear factor of kappa light polypeptide gene enhancer
           in B-cells inhibitor, zeta isoform a [Homo sapiens]
          Length = 718

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 121 EEIQGDPRGGRGDAVAALGCGVV-SPLQRSTLAVVVVFRGSPPPPAGSSA 169
           +++  D RGG G   AA GCG++ SPL  S       F G+ PP A   A
Sbjct: 4   DKLLDDSRGGEGLRDAAGGCGLMTSPLNLS------YFYGASPPAAAPGA 47


>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 513

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 131 RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLP------------HFPATA 178
           R  A+ A G  ++ P  R+   +   F   PPPPAG  +S P              PA  
Sbjct: 296 RRGALPAPGA-LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALG 354

Query: 179 WGLCRLAGRESVFGVSGS 196
                LAG +  FGV  S
Sbjct: 355 RPGDWLAGLQPAFGVKRS 372


>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
           sapiens]
          Length = 513

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 131 RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLP------------HFPATA 178
           R  A+ A G  ++ P  R+   +   F   PPPPAG  +S P              PA  
Sbjct: 296 RRGALPAPGA-LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALG 354

Query: 179 WGLCRLAGRESVFGVSGS 196
                LAG +  FGV  S
Sbjct: 355 RPGDWLAGLQPAFGVKRS 372


>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
           sapiens]
          Length = 513

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 131 RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLP------------HFPATA 178
           R  A+ A G  ++ P  R+   +   F   PPPPAG  +S P              PA  
Sbjct: 296 RRGALPAPGA-LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALG 354

Query: 179 WGLCRLAGRESVFGVSGS 196
                LAG +  FGV  S
Sbjct: 355 RPGDWLAGLQPAFGVKRS 372


>gi|153266792 adenylate cyclase activating polypeptide precursor
           [Homo sapiens]
          Length = 176

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESV 190
           F GS PP AGS AS P   A AW   R AGR  V
Sbjct: 53  FDGSEPPGAGSPASAPR-AAAAW--YRPAGRRDV 83


>gi|153266795 adenylate cyclase activating polypeptide precursor
           [Homo sapiens]
          Length = 176

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESV 190
           F GS PP AGS AS P   A AW   R AGR  V
Sbjct: 53  FDGSEPPGAGSPASAPR-AAAAW--YRPAGRRDV 83


>gi|239746922 PREDICTED: similar to cancer/testis antigen family
           147, member B1 isoform 2 [Homo sapiens]
          Length = 294

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 20/119 (16%)

Query: 22  GGLNGRGAAAGPAGSRR-----------VGESCFSGEGLAALRQGTWIGLIIRLDVDLAL 70
           G L  R   A P+GS             VG +   GEGL  L++     L+   +V   L
Sbjct: 141 GRLMRRRRTAAPSGSEEPRLLLVHERLGVGAAGPEGEGLGLLQEAA---LVPEPEVPADL 197

Query: 71  GQHLRELPLQLLKLLVVRDSINR------STESVQDEWSGREENDEKPGTQGATAEEEI 123
            +  RE   +  +     ++         + E  ++E +  EE+ E+P T+ A A EE+
Sbjct: 198 AEMAREPAEEPAEEKPTEEAAEEELAEEAAEEPAKEEPAAEEESAEEPATEEAAAPEEV 256


>gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo
           sapiens]
          Length = 761

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 160 SPPPPAGSSASLP---HFPATAWGLCRLAGRESVFG 192
           SPPPPA +S+S P     P T W L  LA  E   G
Sbjct: 600 SPPPPASASSSTPVPLSPPDTTWPLPALATTEPAKG 635


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 96  ESVQDEWSGREENDEKPGTQGATAEEEIQG 125
           E  ++E +G+EE  E+ G QG   EEE +G
Sbjct: 774 ERKKEERAGKEEKGEEEGDQGEGEEEETEG 803


>gi|7657013 apoptosis antagonizing transcription factor [Homo
           sapiens]
          Length = 560

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 94  STESVQDEWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAV 135
           S+E  +DE SG EE D+   +QG  +EE+  GD R    D V
Sbjct: 169 SSEEEEDEESGMEEGDDAEDSQG-ESEEDRAGD-RNSEDDGV 208


>gi|22749479 canopy 4 homolog [Homo sapiens]
          Length = 248

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 95  TESVQDEWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALG 139
           T  +Q+ W+G+E  D +  T+G   +EE + +     GD +   G
Sbjct: 194 TACLQETWTGKEITDGEEKTEGEEEQEEEEEEEEEEGGDKMTKTG 238


>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
           sapiens]
          Length = 1246

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 116 GATAEEEIQGDPRGGRGDAVAALGCGVVSPLQR-STLAVVVVFRGS--------PPPPAG 166
           G   E E  G P G RGD V+A  C   +PL R S+L  +V+   S        P PP+ 
Sbjct: 223 GDEDENEAVGQPGGPRGDTVSASPCS--APLARASSLEDLVLKEASTAVSTPEAPEPPSQ 280

Query: 167 SSASLP 172
              ++P
Sbjct: 281 EQWAIP 286


>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
           sapiens]
          Length = 1551

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/66 (27%), Positives = 26/66 (39%)

Query: 69  ALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAEEEIQGDPR 128
           AL   L E      +L     S++R    +Q +W  R E   +  T    +E    G P 
Sbjct: 542 ALSSQLEEARAAQRELEAQVSSLSRQVTQLQGQWEQRLEESSQAKTIHTASETNGMGPPE 601

Query: 129 GGRGDA 134
           GG  +A
Sbjct: 602 GGPQEA 607


>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
            subunit isoform b [Homo sapiens]
          Length = 2188

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 116  GATAEEEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPA---------G 166
            G T  + +      GRG A    G G       S+L++  +F   PPPPA          
Sbjct: 2061 GCTHHDSMDPSDEEGRGGAGGG-GAGSEHSETLSSLSLTSLFCPPPPPPAPGLTPARKFS 2119

Query: 167  SSASL-----PHFPATAWGLCR 183
            S++SL     PH  A A GL R
Sbjct: 2120 STSSLAAPGRPHAAALAHGLAR 2141


>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
            subunit isoform a [Homo sapiens]
          Length = 2223

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 116  GATAEEEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPA---------G 166
            G T  + +      GRG A    G G       S+L++  +F   PPPPA          
Sbjct: 2096 GCTHHDSMDPSDEEGRGGAGGG-GAGSEHSETLSSLSLTSLFCPPPPPPAPGLTPARKFS 2154

Query: 167  SSASL-----PHFPATAWGLCR 183
            S++SL     PH  A A GL R
Sbjct: 2155 STSSLAAPGRPHAAALAHGLAR 2176


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,640,664
Number of Sequences: 37866
Number of extensions: 502493
Number of successful extensions: 2694
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2645
Number of HSP's gapped (non-prelim): 104
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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