BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] (141 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] 291 9e-80 gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] 46 1e-05 gi|9624988 hypothetical protein LOC56260 [Homo sapiens] 44 6e-05 gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens] 38 0.003 gi|118600985 zinc finger protein 91 [Homo sapiens] 33 0.060 gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 33 0.10 gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 33 0.10 gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 33 0.10 gi|224451053 homeobox C14 [Homo sapiens] 32 0.13 gi|139394599 hypermethylated in cancer 2 [Homo sapiens] 32 0.23 gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 31 0.30 gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 0.50 gi|149193327 mucin 20 isoform S [Homo sapiens] 29 1.1 gi|149193325 mucin 20 isoform L [Homo sapiens] 29 1.1 gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 29 1.5 gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 29 1.5 gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 1.5 gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5 gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5 gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5 gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 28 2.5 gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 28 2.5 gi|126157477 hypothetical protein LOC79680 [Homo sapiens] 28 2.5 gi|21618329 forkhead box I1 isoform b [Homo sapiens] 28 3.3 gi|226246533 TOX high mobility group box family member 3 isoform... 27 4.3 gi|226054295 TOX high mobility group box family member 3 isoform... 27 4.3 gi|134244285 Notch homolog 3 [Homo sapiens] 27 4.3 gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 27 4.3 gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 27 4.3 gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 27 4.3 >gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] Length = 141 Score = 291 bits (746), Expect = 9e-80 Identities = 141/141 (100%), Positives = 141/141 (100%) Query: 1 MSYGAHRKPRKCGLRVEGCRSSDKHVLLLDTSTTEATARRRLKWAAGETRSGREWNSRQL 60 MSYGAHRKPRKCGLRVEGCRSSDKHVLLLDTSTTEATARRRLKWAAGETRSGREWNSRQL Sbjct: 1 MSYGAHRKPRKCGLRVEGCRSSDKHVLLLDTSTTEATARRRLKWAAGETRSGREWNSRQL 60 Query: 61 INGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPA 120 INGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPA Sbjct: 61 INGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPA 120 Query: 121 LWEAEAGGSPEPRSLTPAWVA 141 LWEAEAGGSPEPRSLTPAWVA Sbjct: 121 LWEAEAGGSPEPRSLTPAWVA 141 >gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] Length = 99 Score = 45.8 bits (107), Expect = 1e-05 Identities = 20/25 (80%), Positives = 21/25 (84%) Query: 115 TPVIPALWEAEAGGSPEPRSLTPAW 139 TPVIPALW+AEAGG PE RS PAW Sbjct: 72 TPVIPALWKAEAGGLPELRSSRPAW 96 >gi|9624988 hypothetical protein LOC56260 [Homo sapiens] Length = 159 Score = 43.5 bits (101), Expect = 6e-05 Identities = 19/24 (79%), Positives = 20/24 (83%) Query: 116 PVIPALWEAEAGGSPEPRSLTPAW 139 PVIPALWEA+AG SPE RS PAW Sbjct: 43 PVIPALWEAKAGRSPEVRSSKPAW 66 >gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens] Length = 573 Score = 37.7 bits (86), Expect = 0.003 Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 6/50 (12%) Query: 97 PSSVLFSSIKSDGPGTMA---TPVIPALWEAEAGGS---PEPRSLTPAWV 140 PSS+ S + P A TPVIPALWEAEA GS P+ R P V Sbjct: 223 PSSLTSSLCTDNNPAGQAYWFTPVIPALWEAEARGSLEVPDSRKKVPITV 272 >gi|118600985 zinc finger protein 91 [Homo sapiens] Length = 1191 Score = 33.5 bits (75), Expect = 0.060 Identities = 14/15 (93%), Positives = 14/15 (93%) Query: 115 TPVIPALWEAEAGGS 129 TPVIP LWEAEAGGS Sbjct: 1159 TPVIPLLWEAEAGGS 1173 >gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo sapiens] Length = 128 Score = 32.7 bits (73), Expect = 0.10 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131 P +GP L G P IPALWEA+AGGS E Sbjct: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84 >gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo sapiens] Length = 133 Score = 32.7 bits (73), Expect = 0.10 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131 P +GP L G P IPALWEA+AGGS E Sbjct: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84 >gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo sapiens] Length = 251 Score = 32.7 bits (73), Expect = 0.10 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131 P +GP L G P IPALWEA+AGGS E Sbjct: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84 >gi|224451053 homeobox C14 [Homo sapiens] Length = 188 Score = 32.3 bits (72), Expect = 0.13 Identities = 14/15 (93%), Positives = 14/15 (93%) Query: 115 TPVIPALWEAEAGGS 129 TPVIPALWEAEAG S Sbjct: 8 TPVIPALWEAEAGRS 22 >gi|139394599 hypermethylated in cancer 2 [Homo sapiens] Length = 615 Score = 31.6 bits (70), Expect = 0.23 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Query: 45 AAGETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSS 104 A GE G +S +G +QE GL + P LP G PH++ ++ L S Sbjct: 221 AGGEAGLGGCSSSTNGSSGGCEQELGLDLSKKSPP--LPPATPG--PHLTPDDAAQLSDS 276 Query: 105 IKSDGPGTMATPVIPALWEAEAGGSP-EPRSLTPA 138 P A PV + +E GG+P EP L A Sbjct: 277 QHGSPPAASAPPVANSASYSELGGTPDEPMDLEGA 311 >gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] Length = 161 Score = 31.2 bits (69), Expect = 0.30 Identities = 15/22 (68%), Positives = 15/22 (68%) Query: 107 SDGPGTMATPVIPALWEAEAGG 128 S G TPVIPALWEAEA G Sbjct: 59 SMGRARWLTPVIPALWEAEACG 80 >gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens] Length = 2462 Score = 30.4 bits (67), Expect = 0.50 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Query: 31 TSTTEATARRRLKWAAGETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLP 90 T T T R + T G E R+ + G GG A G P S + Sbjct: 2311 TGTGLMTYRSQAVQEHASTNMGLEAIIRKALMG-----GGGKAKVSGRPSSRKA--KSPA 2363 Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWE---AEAGGSPEP 132 P ++SG SS+ S+G TP+ +WE + AG +P P Sbjct: 2364 PGLASGDRPPSVSSVHSEGDCNRRTPLTNRVWEDRPSSAGSTPFP 2408 >gi|149193327 mucin 20 isoform S [Homo sapiens] Length = 503 Score = 29.3 bits (64), Expect = 1.1 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPEPRSLTPAW 139 PH PS SS SDGP + TP + A + G P P +TP+W Sbjct: 148 PHPVITPSRASESSASSDGPHPVITPSRASESSASSDG-PHP-VITPSW 194 >gi|149193325 mucin 20 isoform L [Homo sapiens] Length = 538 Score = 29.3 bits (64), Expect = 1.1 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPEPRSLTPAW 139 PH PS SS SDGP + TP + A + G P P +TP+W Sbjct: 183 PHPVITPSRASESSASSDGPHPVITPSRASESSASSDG-PHP-VITPSW 229 >gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] Length = 858 Score = 28.9 bits (63), Expect = 1.5 Identities = 12/14 (85%), Positives = 13/14 (92%) Query: 116 PVIPALWEAEAGGS 129 PVIPALW+AEAG S Sbjct: 668 PVIPALWKAEAGRS 681 >gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens] Length = 2524 Score = 28.9 bits (63), Expect = 1.5 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 69 GGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPALWE---AE 125 GG A G P S + P ++SG SS+ S+G TP+ +WE + Sbjct: 2406 GGGKAKVSGRPSSRKA--KSPAPGLASGDRPPSVSSVHSEGDCNRRTPLTNRVWEDRPSS 2463 Query: 126 AGGSPEP 132 AG +P P Sbjct: 2464 AGSTPFP 2470 >gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] Length = 2752 Score = 28.9 bits (63), Expect = 1.5 Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 88 GLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPEPRSL 135 G P + G + S+ PG P P+ +E SPEP++L Sbjct: 1442 GSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKAL 1489 >gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] Length = 426 Score = 28.1 bits (61), Expect = 2.5 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%) Query: 46 AGETRSGREWNSRQLINGTVQQE--------GGLAAFSQGSP---RSLPLVWRGLPPH-- 92 AGE R+ R+W R G +E GG+ ++GS R P W+G P+ Sbjct: 281 AGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRA 340 Query: 93 -MSSGPSSVLFSSIKSDGPG 111 ++GP S+ + PG Sbjct: 341 IFAAGPRLSAPSAEAEEVPG 360 >gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 28.1 bits (61), Expect = 2.5 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%) Query: 46 AGETRSGREWNSRQLINGTVQQE--------GGLAAFSQGSP---RSLPLVWRGLPPH-- 92 AGE R+ R+W R G +E GG+ ++GS R P W+G P+ Sbjct: 375 AGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRA 434 Query: 93 -MSSGPSSVLFSSIKSDGPG 111 ++GP S+ + PG Sbjct: 435 IFAAGPRLSAPSAEAEEVPG 454 >gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 28.1 bits (61), Expect = 2.5 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%) Query: 46 AGETRSGREWNSRQLINGTVQQE--------GGLAAFSQGSP---RSLPLVWRGLPPH-- 92 AGE R+ R+W R G +E GG+ ++GS R P W+G P+ Sbjct: 375 AGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRA 434 Query: 93 -MSSGPSSVLFSSIKSDGPG 111 ++GP S+ + PG Sbjct: 435 IFAAGPRLSAPSAEAEEVPG 454 >gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] Length = 1120 Score = 28.1 bits (61), Expect = 2.5 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%) Query: 93 MSSGPSSVLFSSIKS-DGPGTMATPVI--------PALWEAEAGGSPEPRSLTPA 138 ++ GP + +++ +GP T ++ P L A AGG PEP L PA Sbjct: 557 LAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPA 611 >gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] Length = 1202 Score = 28.1 bits (61), Expect = 2.5 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%) Query: 93 MSSGPSSVLFSSIKS-DGPGTMATPVI--------PALWEAEAGGSPEPRSLTPA 138 ++ GP + +++ +GP T ++ P L A AGG PEP L PA Sbjct: 639 LAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPA 693 >gi|126157477 hypothetical protein LOC79680 [Homo sapiens] Length = 364 Score = 28.1 bits (61), Expect = 2.5 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 10/77 (12%) Query: 71 LAAFSQGSPRSLPLVWRGLPPHMS----SGPSSVLFSSI------KSDGPGTMATPVIPA 120 LA F +G + R LP M+ SG +SV S++ K PG PV+P+ Sbjct: 216 LARFLEGLALDMGTAPRSLPAAMATPAVSGSNSVSRSALFEQQLTKESTPGPKEPPVLPS 275 Query: 121 LWEAEAGGSPEPRSLTP 137 + G EP S P Sbjct: 276 STCSSKPGPVEPASSQP 292 >gi|21618329 forkhead box I1 isoform b [Homo sapiens] Length = 283 Score = 27.7 bits (60), Expect = 3.3 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Query: 66 QQEGGLAAFSQGSPRSLPLVWRGLPPHMS--SGPSSVLFSSI-------KSDGPGTMATP 116 + E A S GSP S PLV GL P S +G +S+ F+S G G A P Sbjct: 186 RDEDDPAYVSGGSPTSHPLVTPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANP 245 Query: 117 V 117 + Sbjct: 246 M 246 >gi|226246533 TOX high mobility group box family member 3 isoform 2 [Homo sapiens] Length = 571 Score = 27.3 bits (59), Expect = 4.3 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 48 ETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFS-SIK 106 +T + S L+N + Q G ++A Q +SLP P M + ++ S +I Sbjct: 340 QTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIA 399 Query: 107 SDGPGTMATPVIPALWEAEAGGSP 130 ++ P + P+I ++ G +P Sbjct: 400 ANMPSNIGAPLISSMGTTMVGSAP 423 >gi|226054295 TOX high mobility group box family member 3 isoform 1 [Homo sapiens] Length = 576 Score = 27.3 bits (59), Expect = 4.3 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 48 ETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFS-SIK 106 +T + S L+N + Q G ++A Q +SLP P M + ++ S +I Sbjct: 345 QTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIA 404 Query: 107 SDGPGTMATPVIPALWEAEAGGSP 130 ++ P + P+I ++ G +P Sbjct: 405 ANMPSNIGAPLISSMGTTMVGSAP 428 >gi|134244285 Notch homolog 3 [Homo sapiens] Length = 2321 Score = 27.3 bits (59), Expect = 4.3 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 63 GTVQQEGGLAAFSQG--SPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTM--ATPVI 118 G +Q G S G +P ++PL W LPP GPS +L + GP + TPV Sbjct: 2147 GLGRQPPGGCVLSLGLLNPVAVPLDWARLPPPAPPGPSFLL---PLAPGPQLLNPGTPVS 2203 Query: 119 P 119 P Sbjct: 2204 P 2204 >gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] Length = 1164 Score = 27.3 bits (59), Expect = 4.3 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 47 GETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIK 106 GET++ R ++R G+ GG + S S S P PPH +GP S + + Sbjct: 1016 GETKTPRPSSAR----GSSGSRGGGGSSSSSSELSTP----EKPPHQRAGPFSSRWETTM 1067 Query: 107 SDGPGTMATPV 117 + ++ T V Sbjct: 1068 GEASASIPTTV 1078 >gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] Length = 1113 Score = 27.3 bits (59), Expect = 4.3 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 47 GETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIK 106 GET++ R ++R G+ GG + S S S P PPH +GP S + + Sbjct: 965 GETKTPRPSSAR----GSSGSRGGGGSSSSSSELSTP----EKPPHQRAGPFSSRWETTM 1016 Query: 107 SDGPGTMATPV 117 + ++ T V Sbjct: 1017 GEASASIPTTV 1027 >gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] Length = 1163 Score = 27.3 bits (59), Expect = 4.3 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 47 GETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIK 106 GET++ R ++R G+ GG + S S S P PPH +GP S + + Sbjct: 1015 GETKTPRPSSAR----GSSGSRGGGGSSSSSSELSTP----EKPPHQRAGPFSSRWETTM 1066 Query: 107 SDGPGTMATPV 117 + ++ T V Sbjct: 1067 GEASASIPTTV 1077 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.129 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,825,553 Number of Sequences: 37866 Number of extensions: 325844 Number of successful extensions: 725 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 34 Number of HSP's that attempted gapping in prelim test: 701 Number of HSP's gapped (non-prelim): 58 length of query: 141 length of database: 18,247,518 effective HSP length: 92 effective length of query: 49 effective length of database: 14,763,846 effective search space: 723428454 effective search space used: 723428454 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.