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Search of human proteins with 239747192
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] 291 9e-80
gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] 46 1e-05
gi|9624988 hypothetical protein LOC56260 [Homo sapiens] 44 6e-05
gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens] 38 0.003
gi|118600985 zinc finger protein 91 [Homo sapiens] 33 0.060
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 33 0.10
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 33 0.10
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 33 0.10
gi|224451053 homeobox C14 [Homo sapiens] 32 0.13
gi|139394599 hypermethylated in cancer 2 [Homo sapiens] 32 0.23
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 31 0.30
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 0.50
gi|149193327 mucin 20 isoform S [Homo sapiens] 29 1.1
gi|149193325 mucin 20 isoform L [Homo sapiens] 29 1.1
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 29 1.5
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 29 1.5
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 1.5
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 28 2.5
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 28 2.5
gi|126157477 hypothetical protein LOC79680 [Homo sapiens] 28 2.5
gi|21618329 forkhead box I1 isoform b [Homo sapiens] 28 3.3
gi|226246533 TOX high mobility group box family member 3 isoform... 27 4.3
gi|226054295 TOX high mobility group box family member 3 isoform... 27 4.3
gi|134244285 Notch homolog 3 [Homo sapiens] 27 4.3
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 27 4.3
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 27 4.3
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 27 4.3
>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
Length = 141
Score = 291 bits (746), Expect = 9e-80
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MSYGAHRKPRKCGLRVEGCRSSDKHVLLLDTSTTEATARRRLKWAAGETRSGREWNSRQL 60
MSYGAHRKPRKCGLRVEGCRSSDKHVLLLDTSTTEATARRRLKWAAGETRSGREWNSRQL
Sbjct: 1 MSYGAHRKPRKCGLRVEGCRSSDKHVLLLDTSTTEATARRRLKWAAGETRSGREWNSRQL 60
Query: 61 INGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPA 120
INGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPA
Sbjct: 61 INGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPA 120
Query: 121 LWEAEAGGSPEPRSLTPAWVA 141
LWEAEAGGSPEPRSLTPAWVA
Sbjct: 121 LWEAEAGGSPEPRSLTPAWVA 141
>gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]
Length = 99
Score = 45.8 bits (107), Expect = 1e-05
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 115 TPVIPALWEAEAGGSPEPRSLTPAW 139
TPVIPALW+AEAGG PE RS PAW
Sbjct: 72 TPVIPALWKAEAGGLPELRSSRPAW 96
>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
Length = 159
Score = 43.5 bits (101), Expect = 6e-05
Identities = 19/24 (79%), Positives = 20/24 (83%)
Query: 116 PVIPALWEAEAGGSPEPRSLTPAW 139
PVIPALWEA+AG SPE RS PAW
Sbjct: 43 PVIPALWEAKAGRSPEVRSSKPAW 66
>gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]
Length = 573
Score = 37.7 bits (86), Expect = 0.003
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 97 PSSVLFSSIKSDGPGTMA---TPVIPALWEAEAGGS---PEPRSLTPAWV 140
PSS+ S + P A TPVIPALWEAEA GS P+ R P V
Sbjct: 223 PSSLTSSLCTDNNPAGQAYWFTPVIPALWEAEARGSLEVPDSRKKVPITV 272
>gi|118600985 zinc finger protein 91 [Homo sapiens]
Length = 1191
Score = 33.5 bits (75), Expect = 0.060
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 115 TPVIPALWEAEAGGS 129
TPVIP LWEAEAGGS
Sbjct: 1159 TPVIPLLWEAEAGGS 1173
>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
sapiens]
Length = 128
Score = 32.7 bits (73), Expect = 0.10
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131
P +GP L G P IPALWEA+AGGS E
Sbjct: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 32.7 bits (73), Expect = 0.10
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131
P +GP L G P IPALWEA+AGGS E
Sbjct: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 32.7 bits (73), Expect = 0.10
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131
P +GP L G P IPALWEA+AGGS E
Sbjct: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84
>gi|224451053 homeobox C14 [Homo sapiens]
Length = 188
Score = 32.3 bits (72), Expect = 0.13
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 115 TPVIPALWEAEAGGS 129
TPVIPALWEAEAG S
Sbjct: 8 TPVIPALWEAEAGRS 22
>gi|139394599 hypermethylated in cancer 2 [Homo sapiens]
Length = 615
Score = 31.6 bits (70), Expect = 0.23
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 45 AAGETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSS 104
A GE G +S +G +QE GL + P LP G PH++ ++ L S
Sbjct: 221 AGGEAGLGGCSSSTNGSSGGCEQELGLDLSKKSPP--LPPATPG--PHLTPDDAAQLSDS 276
Query: 105 IKSDGPGTMATPVIPALWEAEAGGSP-EPRSLTPA 138
P A PV + +E GG+P EP L A
Sbjct: 277 QHGSPPAASAPPVANSASYSELGGTPDEPMDLEGA 311
>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 161
Score = 31.2 bits (69), Expect = 0.30
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 107 SDGPGTMATPVIPALWEAEAGG 128
S G TPVIPALWEAEA G
Sbjct: 59 SMGRARWLTPVIPALWEAEACG 80
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 30.4 bits (67), Expect = 0.50
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 31 TSTTEATARRRLKWAAGETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLP 90
T T T R + T G E R+ + G GG A G P S +
Sbjct: 2311 TGTGLMTYRSQAVQEHASTNMGLEAIIRKALMG-----GGGKAKVSGRPSSRKA--KSPA 2363
Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWE---AEAGGSPEP 132
P ++SG SS+ S+G TP+ +WE + AG +P P
Sbjct: 2364 PGLASGDRPPSVSSVHSEGDCNRRTPLTNRVWEDRPSSAGSTPFP 2408
>gi|149193327 mucin 20 isoform S [Homo sapiens]
Length = 503
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPEPRSLTPAW 139
PH PS SS SDGP + TP + A + G P P +TP+W
Sbjct: 148 PHPVITPSRASESSASSDGPHPVITPSRASESSASSDG-PHP-VITPSW 194
>gi|149193325 mucin 20 isoform L [Homo sapiens]
Length = 538
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPEPRSLTPAW 139
PH PS SS SDGP + TP + A + G P P +TP+W
Sbjct: 183 PHPVITPSRASESSASSDGPHPVITPSRASESSASSDG-PHP-VITPSW 229
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 28.9 bits (63), Expect = 1.5
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 116 PVIPALWEAEAGGS 129
PVIPALW+AEAG S
Sbjct: 668 PVIPALWKAEAGRS 681
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 28.9 bits (63), Expect = 1.5
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 69 GGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPALWE---AE 125
GG A G P S + P ++SG SS+ S+G TP+ +WE +
Sbjct: 2406 GGGKAKVSGRPSSRKA--KSPAPGLASGDRPPSVSSVHSEGDCNRRTPLTNRVWEDRPSS 2463
Query: 126 AGGSPEP 132
AG +P P
Sbjct: 2464 AGSTPFP 2470
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.9 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 88 GLPPHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPEPRSL 135
G P + G + S+ PG P P+ +E SPEP++L
Sbjct: 1442 GSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKAL 1489
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 28.1 bits (61), Expect = 2.5
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 46 AGETRSGREWNSRQLINGTVQQE--------GGLAAFSQGSP---RSLPLVWRGLPPH-- 92
AGE R+ R+W R G +E GG+ ++GS R P W+G P+
Sbjct: 281 AGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRA 340
Query: 93 -MSSGPSSVLFSSIKSDGPG 111
++GP S+ + PG
Sbjct: 341 IFAAGPRLSAPSAEAEEVPG 360
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 28.1 bits (61), Expect = 2.5
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 46 AGETRSGREWNSRQLINGTVQQE--------GGLAAFSQGSP---RSLPLVWRGLPPH-- 92
AGE R+ R+W R G +E GG+ ++GS R P W+G P+
Sbjct: 375 AGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRA 434
Query: 93 -MSSGPSSVLFSSIKSDGPG 111
++GP S+ + PG
Sbjct: 435 IFAAGPRLSAPSAEAEEVPG 454
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 28.1 bits (61), Expect = 2.5
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 46 AGETRSGREWNSRQLINGTVQQE--------GGLAAFSQGSP---RSLPLVWRGLPPH-- 92
AGE R+ R+W R G +E GG+ ++GS R P W+G P+
Sbjct: 375 AGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRA 434
Query: 93 -MSSGPSSVLFSSIKSDGPG 111
++GP S+ + PG
Sbjct: 435 IFAAGPRLSAPSAEAEEVPG 454
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 28.1 bits (61), Expect = 2.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 93 MSSGPSSVLFSSIKS-DGPGTMATPVI--------PALWEAEAGGSPEPRSLTPA 138
++ GP + +++ +GP T ++ P L A AGG PEP L PA
Sbjct: 557 LAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPA 611
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 28.1 bits (61), Expect = 2.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 93 MSSGPSSVLFSSIKS-DGPGTMATPVI--------PALWEAEAGGSPEPRSLTPA 138
++ GP + +++ +GP T ++ P L A AGG PEP L PA
Sbjct: 639 LAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSPELQAAMAGGGPEPLPLPPA 693
>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
Length = 364
Score = 28.1 bits (61), Expect = 2.5
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 71 LAAFSQGSPRSLPLVWRGLPPHMS----SGPSSVLFSSI------KSDGPGTMATPVIPA 120
LA F +G + R LP M+ SG +SV S++ K PG PV+P+
Sbjct: 216 LARFLEGLALDMGTAPRSLPAAMATPAVSGSNSVSRSALFEQQLTKESTPGPKEPPVLPS 275
Query: 121 LWEAEAGGSPEPRSLTP 137
+ G EP S P
Sbjct: 276 STCSSKPGPVEPASSQP 292
>gi|21618329 forkhead box I1 isoform b [Homo sapiens]
Length = 283
Score = 27.7 bits (60), Expect = 3.3
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 66 QQEGGLAAFSQGSPRSLPLVWRGLPPHMS--SGPSSVLFSSI-------KSDGPGTMATP 116
+ E A S GSP S PLV GL P S +G +S+ F+S G G A P
Sbjct: 186 RDEDDPAYVSGGSPTSHPLVTPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANP 245
Query: 117 V 117
+
Sbjct: 246 M 246
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 48 ETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFS-SIK 106
+T + S L+N + Q G ++A Q +SLP P M + ++ S +I
Sbjct: 340 QTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIA 399
Query: 107 SDGPGTMATPVIPALWEAEAGGSP 130
++ P + P+I ++ G +P
Sbjct: 400 ANMPSNIGAPLISSMGTTMVGSAP 423
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 48 ETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFS-SIK 106
+T + S L+N + Q G ++A Q +SLP P M + ++ S +I
Sbjct: 345 QTLASTNLTSSLLLNTPLSQHGTVSASPQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIA 404
Query: 107 SDGPGTMATPVIPALWEAEAGGSP 130
++ P + P+I ++ G +P
Sbjct: 405 ANMPSNIGAPLISSMGTTMVGSAP 428
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 27.3 bits (59), Expect = 4.3
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 63 GTVQQEGGLAAFSQG--SPRSLPLVWRGLPPHMSSGPSSVLFSSIKSDGPGTM--ATPVI 118
G +Q G S G +P ++PL W LPP GPS +L + GP + TPV
Sbjct: 2147 GLGRQPPGGCVLSLGLLNPVAVPLDWARLPPPAPPGPSFLL---PLAPGPQLLNPGTPVS 2203
Query: 119 P 119
P
Sbjct: 2204 P 2204
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 47 GETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIK 106
GET++ R ++R G+ GG + S S S P PPH +GP S + +
Sbjct: 1016 GETKTPRPSSAR----GSSGSRGGGGSSSSSSELSTP----EKPPHQRAGPFSSRWETTM 1067
Query: 107 SDGPGTMATPV 117
+ ++ T V
Sbjct: 1068 GEASASIPTTV 1078
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
Length = 1113
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 47 GETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIK 106
GET++ R ++R G+ GG + S S S P PPH +GP S + +
Sbjct: 965 GETKTPRPSSAR----GSSGSRGGGGSSSSSSELSTP----EKPPHQRAGPFSSRWETTM 1016
Query: 107 SDGPGTMATPV 117
+ ++ T V
Sbjct: 1017 GEASASIPTTV 1027
>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
Length = 1163
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 47 GETRSGREWNSRQLINGTVQQEGGLAAFSQGSPRSLPLVWRGLPPHMSSGPSSVLFSSIK 106
GET++ R ++R G+ GG + S S S P PPH +GP S + +
Sbjct: 1015 GETKTPRPSSAR----GSSGSRGGGGSSSSSSELSTP----EKPPHQRAGPFSSRWETTM 1066
Query: 107 SDGPGTMATPV 117
+ ++ T V
Sbjct: 1067 GEASASIPTTV 1077
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,825,553
Number of Sequences: 37866
Number of extensions: 325844
Number of successful extensions: 725
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 58
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.