Guide to the Human Genome
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Name: LOC100294457 Sequence: fasta or formatted (141aa) NCBI GI: 239747192
Description:

PREDICTED: similar to hCG2038988

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         13           2
 C cysteine            1.4          2           1
 D aspartate           2.1          3           1
 E glutamate           5.7          8           1
 F phenylalanine       1.4          2           1
 G glycine            10.6         15           2
 H histidine           2.1          3           1
 I isoleucine          2.1          3           1
 K lysine              3.5          5           1
 L leucine             9.2         13           3
 M methionine          2.1          3           1
 N asparagine          1.4          2           1
 P proline             8.5         12           2
 Q glutamine           2.8          4           2
 R arginine            9.2         13           3
 S serine             12.8         18           2
 T threonine           6.4          9           2
 V valine              5.0          7           1
 W tryptophan          3.5          5           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2038988 
LOC100293561          0.079   PREDICTED: similar to Protein MOST-1 
C8orf44               0.071   hypothetical protein LOC56260 
TCTN1                 0.049   tectonic family member 1 isoform 3 
ZNF91                 0.030   zinc finger protein 91 
CYB561D1              0.030   cytochrome b-561 domain containing 1 isoform 5 [Hom...
CYB561D1              0.030   cytochrome b-561 domain containing 1 isoform 4 [Hom...
CYB561D1              0.030   cytochrome b-561 domain containing 1 isoform 1 [Hom...
LOC360030             0.026   homeobox C14 
HIC2                  0.026   hypermethylated in cancer 2 
LOC391359             0.023   PREDICTED: similar to hCG1784039 
NCOR2                 0.019   nuclear receptor co-repressor 2 isoform 2 
MUC20                 0.015   mucin 20 isoform S 
MUC20                 0.015   mucin 20 isoform L 
LOC100294407          0.015   PREDICTED: similar to hCG2039376 
NCOR2                 0.015   nuclear receptor co-repressor 2 isoform 1 
SRRM2                 0.015   splicing coactivator subunit SRm300 
LOC643355             0.011   PREDICTED: hypothetical protein 
LOC643355             0.011   PREDICTED: hypothetical protein 
LOC643355             0.011   PREDICTED: hypothetical protein 
CASKIN2               0.011   cask-interacting protein 2 isoform b 
CASKIN2               0.011   cask-interacting protein 2 isoform a 
C22orf29              0.011   hypothetical protein LOC79680 
FOXI1                 0.011   forkhead box I1 isoform b 
TOX3                  0.008   TOX high mobility group box family member 3 isoform...
TOX3                  0.008   TOX high mobility group box family member 3 isoform...
NOTCH3                0.008   Notch homolog 3 
TSC1                  0.008   tuberous sclerosis 1 protein isoform 1 
TSC1                  0.008   tuberous sclerosis 1 protein isoform 4 
TSC1                  0.008   tuberous sclerosis 1 protein isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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