Guide to the Human Genome
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Name: LOC100293561 Sequence: fasta or formatted (99aa) NCBI GI: 239754959
Description:

PREDICTED: similar to Protein MOST-1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1          8           1
 C cysteine            3.0          3           1
 D aspartate           3.0          3           1
 E glutamate           6.1          6           1
 F phenylalanine       1.0          1           1
 G glycine             8.1          8           2
 H histidine           5.1          5           1
 I isoleucine          2.0          2           1
 K lysine              3.0          3           1
 L leucine            10.1         10           1
 M methionine          3.0          3           1
 N asparagine          0.0          0           0
 P proline             7.1          7           1
 Q glutamine           1.0          1           1
 R arginine            8.1          8           1
 S serine              9.1          9           2
 T threonine           9.1          9           3
 V valine              4.0          4           1
 W tryptophan          7.1          7           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Protein MOST-1 
C8orf44               0.185   hypothetical protein LOC56260 
LOC100294457          0.108   PREDICTED: similar to hCG2038988 
LOC360030             0.082   homeobox C14 
LOC391359             0.077   PREDICTED: similar to hCG1784039 
TCTN1                 0.062   tectonic family member 1 isoform 3 
CYB561D1              0.051   cytochrome b-561 domain containing 1 isoform 5 [Hom...
CYB561D1              0.051   cytochrome b-561 domain containing 1 isoform 4 [Hom...
CYB561D1              0.051   cytochrome b-561 domain containing 1 isoform 1 [Hom...
LOC100288426          0.031   PREDICTED: hypothetical protein XP_002343430 
ZNF91                 0.031   zinc finger protein 91 
LOC100294407          0.031   PREDICTED: similar to hCG2039376 
GPR124                0.026   G protein-coupled receptor 124 
ARHGAP11B             0.010   Rho GTPase activating protein 11B 
TAT                   0.010   tyrosine aminotransferase 
FJX1                  0.010   four jointed box 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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