Guide to the Human Genome
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Name: LOC100289352 Sequence: fasta or formatted (102aa) NCBI GI: 239747129
Description:

PREDICTED: hypothetical protein XP_002344491

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         10           2
 C cysteine            3.9          4           1
 D aspartate           4.9          5           1
 E glutamate           2.9          3           1
 F phenylalanine       2.0          2           1
 G glycine             9.8         10           1
 H histidine           3.9          4           1
 I isoleucine          3.9          4           1
 K lysine              4.9          5           1
 L leucine             9.8         10           2
 M methionine          2.0          2           1
 N asparagine          0.0          0           0
 P proline             3.9          4           1
 Q glutamine           5.9          6           1
 R arginine            8.8          9           2
 S serine              8.8          9           1
 T threonine           3.9          4           1
 V valine              5.9          6           1
 W tryptophan          2.9          3           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344491 
LOC100288784          0.910   PREDICTED: hypothetical protein XP_002343775 
LOC642204             0.894   PREDICTED: hCG2042718 
LOC642204             0.894   PREDICTED: hCG2042718 
LOC642204             0.894   PREDICTED: hypothetical protein LOC642204 
LOC728157             0.852   PREDICTED: hypothetical protein 
LOC728157             0.852   PREDICTED: hypothetical protein 
LOC100290156          0.608   PREDICTED: hypothetical protein XP_002347322 
ANKRD20A3             0.571   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.571   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.571   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.566   ankyrin repeat domain 20 family, member A4 
ANKRD20A5             0.503   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.503   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18A              0.307   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.307   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.307   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.286   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.286   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.280   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.101   ankyrin repeat domain 26 
ANKRD62               0.095   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.095   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.095   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD7                0.090   ankyrin repeat domain 7 
TRIM5                 0.074   tripartite motif protein TRIM5 isoform delta 
ANKDD1A               0.063   ankyrin repeat and death domain containing 1A 
LOC730465             0.063   PREDICTED: similar to hCG1793014 
PRR16                 0.063   proline rich 16 
CHID1                 0.058   chitinase domain containing 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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