Guide to the Human Genome
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Name: LOC100290156 Sequence: fasta or formatted (68aa) NCBI GI: 239750225
Description:

PREDICTED: hypothetical protein XP_002347322

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8          6           2
 C cysteine            1.5          1           1
 D aspartate           7.4          5           1
 E glutamate           4.4          3           1
 F phenylalanine       2.9          2           1
 G glycine            13.2          9           1
 H histidine           5.9          4           1
 I isoleucine          4.4          3           1
 K lysine              5.9          4           1
 L leucine             7.4          5           1
 M methionine          1.5          1           1
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine           4.4          3           1
 R arginine           13.2          9           2
 S serine              7.4          5           1
 T threonine           2.9          2           1
 V valine              5.9          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347322 
LOC100289352          1.000   PREDICTED: hypothetical protein XP_002344491 
ANKRD20A3             0.922   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.922   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.922   ankyrin repeat domain 20 family, member A1 
LOC100288784          0.913   PREDICTED: hypothetical protein XP_002343775 
ANKRD20A4             0.913   ankyrin repeat domain 20 family, member A4 
LOC728157             0.896   PREDICTED: hypothetical protein 
LOC728157             0.896   PREDICTED: hypothetical protein 
LOC642204             0.887   PREDICTED: hCG2042718 
LOC642204             0.887   PREDICTED: hCG2042718 
LOC642204             0.887   PREDICTED: hypothetical protein LOC642204 
ANKRD20A5             0.817   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.817   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18A              0.496   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.496   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.496   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.470   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.470   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.452   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.148   ankyrin repeat domain 26 
ANKRD7                0.139   ankyrin repeat domain 7 
ANKRD62               0.130   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.130   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.130   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
LOC730465             0.087   PREDICTED: similar to hCG1793014 
CCDC144NL             0.070   coiled-coil domain containing 144 family, N-terminal...
CCDC144B              0.052   coiled-coil domain containing 144B 
CCDC144A              0.052   coiled-coil domain containing 144A 
LOC653781             0.043   PREDICTED: similar to protein expressed in prostate...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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