Guide to the Human Genome
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Name: LOC100288784 Sequence: fasta or formatted (102aa) NCBI GI: 239746550
Description:

PREDICTED: hypothetical protein XP_002343775

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         11           2
 C cysteine            3.9          4           1
 D aspartate           4.9          5           1
 E glutamate           2.9          3           1
 F phenylalanine       2.0          2           1
 G glycine             8.8          9           1
 H histidine           2.9          3           1
 I isoleucine          3.9          4           1
 K lysine              4.9          5           1
 L leucine            10.8         11           2
 M methionine          2.0          2           1
 N asparagine          1.0          1           1
 P proline             3.9          4           1
 Q glutamine           5.9          6           1
 R arginine            8.8          9           2
 S serine              8.8          9           1
 T threonine           3.9          4           1
 V valine              4.9          5           1
 W tryptophan          2.9          3           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343775 
LOC642204             0.920   PREDICTED: hCG2042718 
LOC642204             0.920   PREDICTED: hCG2042718 
LOC642204             0.920   PREDICTED: hypothetical protein LOC642204 
LOC100289352          0.915   PREDICTED: hypothetical protein XP_002344491 
LOC728157             0.824   PREDICTED: hypothetical protein 
LOC728157             0.824   PREDICTED: hypothetical protein 
LOC100290156          0.559   PREDICTED: hypothetical protein XP_002347322 
ANKRD20A3             0.553   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.553   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.553   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.548   ankyrin repeat domain 20 family, member A4 
ANKRD20A5             0.489   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.489   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18A              0.287   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.287   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.287   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.266   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.266   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.261   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.101   ankyrin repeat domain 26 
ANKRD62               0.080   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.080   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.080   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD7                0.080   ankyrin repeat domain 7 
ANKDD1A               0.080   ankyrin repeat and death domain containing 1A 
TRIM5                 0.074   tripartite motif protein TRIM5 isoform delta 
PRR16                 0.069   proline rich 16 
CHID1                 0.064   chitinase domain containing 1 isoform b 
LOC730465             0.059   PREDICTED: similar to hCG1793014 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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