Guide to the Human Genome
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Name: LOC728157 Sequence: fasta or formatted (102aa) NCBI GI: 169217341
Description:

PREDICTED: hypothetical protein

Referenced in:

Ankyrin Family
Y-linked Genes

Other entries for this name:
alt mRNA [102aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         11           2
 C cysteine            4.9          5           1
 D aspartate           3.9          4           1
 E glutamate           2.9          3           1
 F phenylalanine       2.0          2           1
 G glycine            11.8         12           2
 H histidine           3.9          4           1
 I isoleucine          3.9          4           1
 K lysine              4.9          5           1
 L leucine            10.8         11           2
 M methionine          2.9          3           1
 N asparagine          0.0          0           0
 P proline             3.9          4           1
 Q glutamine           5.9          6           1
 R arginine            8.8          9           2
 S serine              8.8          9           1
 T threonine           2.0          2           1
 V valine              4.9          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728157             1.000   PREDICTED: hypothetical protein 
LOC100289352          0.866   PREDICTED: hypothetical protein XP_002344491 
LOC100288784          0.833   PREDICTED: hypothetical protein XP_002343775 
LOC642204             0.833   PREDICTED: hCG2042718 
LOC642204             0.833   PREDICTED: hCG2042718 
LOC642204             0.833   PREDICTED: hypothetical protein LOC642204 
LOC100290156          0.554   PREDICTED: hypothetical protein XP_002347322 
ANKRD20A3             0.532   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.532   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.532   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.532   ankyrin repeat domain 20 family, member A4 
ANKRD20A5             0.468   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.468   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18A              0.285   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.285   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.285   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.263   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.263   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.258   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.118   ankyrin repeat domain 26 
ANKRD62               0.086   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.086   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.086   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
TRIM5                 0.075   tripartite motif protein TRIM5 isoform delta 
PRR16                 0.070   proline rich 16 
CCDC144NL             0.065   coiled-coil domain containing 144 family, N-terminal...
ANKDD1A               0.065   ankyrin repeat and death domain containing 1A 
CCDC144B              0.065   coiled-coil domain containing 144B 
CCDC144A              0.065   coiled-coil domain containing 144A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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