Guide to the Human Genome
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Name: LOC642204 Sequence: fasta or formatted (102aa) NCBI GI: 169217749
Description:

PREDICTED: hCG2042718

Referenced in:

Ankyrin Family

Other entries for this name:
alt mRNA [102aa] PREDICTED: hypothetical protein LOC642204
alt mRNA [102aa] PREDICTED: hCG2042718
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         11           2
 C cysteine            4.9          5           2
 D aspartate           4.9          5           1
 E glutamate           2.9          3           1
 F phenylalanine       2.0          2           1
 G glycine             8.8          9           1
 H histidine           3.9          4           1
 I isoleucine          3.9          4           1
 K lysine              4.9          5           1
 L leucine             8.8          9           2
 M methionine          2.0          2           1
 N asparagine          0.0          0           0
 P proline             5.9          6           2
 Q glutamine           5.9          6           1
 R arginine            8.8          9           2
 S serine              7.8          8           1
 T threonine           3.9          4           1
 V valine              4.9          5           1
 W tryptophan          2.9          3           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hCG2042718 
LOC642204             1.000   PREDICTED: hCG2042718 
LOC642204             1.000   PREDICTED: hypothetical protein LOC642204 
LOC100288784          0.896   PREDICTED: hypothetical protein XP_002343775 
LOC100289352          0.876   PREDICTED: hypothetical protein XP_002344491 
LOC728157             0.803   PREDICTED: hypothetical protein 
LOC728157             0.803   PREDICTED: hypothetical protein 
LOC100290156          0.528   PREDICTED: hypothetical protein XP_002347322 
ANKRD20A3             0.508   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.508   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.508   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.497   ankyrin repeat domain 20 family, member A4 
ANKRD20A5             0.440   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.440   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18A              0.259   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.259   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.259   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.254   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.254   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.244   PREDICTED: ankyrin repeat domain 18B 
ANKDD1A               0.098   ankyrin repeat and death domain containing 1A 
TRIM5                 0.093   tripartite motif protein TRIM5 isoform delta 
OR7G1                 0.073   olfactory receptor, family 7, subfamily G, member 1 ...
ANKRD26               0.067   ankyrin repeat domain 26 
PRR16                 0.067   proline rich 16 
CHID1                 0.062   chitinase domain containing 1 isoform b 
NEK5                  0.057   NIMA-related kinase 5 
ANKRD62               0.057   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.057   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.057   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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