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Search of human proteins with 239747126
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo
sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo ... 431 e-121
gi|239743837 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|239743815 PREDICTED: hypothetical protein [Homo sapiens] 400 e-112
gi|239743851 PREDICTED: hypothetical protein [Homo sapiens] 386 e-108
gi|239743848 PREDICTED: hypothetical protein [Homo sapiens] 386 e-108
gi|239743746 PREDICTED: hypothetical protein [Homo sapiens] 386 e-108
gi|239758169 PREDICTED: hypothetical protein [Homo sapiens] 380 e-106
gi|239745046 PREDICTED: hypothetical protein [Homo sapiens] 87 1e-17
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 47 7e-06
gi|160707881 formin 2 [Homo sapiens] 45 4e-05
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 41 7e-04
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 41 7e-04
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 41 7e-04
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 41 7e-04
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 41 7e-04
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 41 7e-04
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 41 7e-04
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 41 7e-04
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 39 0.002
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 39 0.002
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 39 0.002
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 39 0.003
gi|41350201 epsin 1 isoform c [Homo sapiens] 38 0.006
gi|194248095 epsin 1 isoform b [Homo sapiens] 38 0.006
gi|194272148 epsin 1 isoform a [Homo sapiens] 38 0.006
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 37 0.010
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.022
gi|194097341 period 1 [Homo sapiens] 35 0.028
gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens] 35 0.037
>gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo
sapiens]
Length = 185
Score = 431 bits (1109), Expect = e-121
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW
Sbjct: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL
Sbjct: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
Query: 181 SCPWL 185
SCPWL
Sbjct: 181 SCPWL 185
>gi|239743837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 404 bits (1039), Expect = e-113
Identities = 175/185 (94%), Positives = 178/185 (96%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSL+LPCPSMPWPCPHPALALHWSCPALALPWP PCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALPWPRPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESMKWPWTCLAILCP P+LSPPCSGP LALALLLVLPLLWPCSVFG ALCYPSPALPW
Sbjct: 61 PTESMKWPWTCLAILCPGPILSPPCSGPALALALLLVLPLLWPCSVFGRALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPG TLAFSTLALP PGLALPWPCPAMALALPCPCPGPGS+LLL LALVL
Sbjct: 121 PWPYHGLLLPWPGPTLAFSTLALPFPGLALPWPCPAMALALPCPCPGPGSSLLLDLALVL 180
Query: 181 SCPWL 185
SCPWL
Sbjct: 181 SCPWL 185
>gi|239743815 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 400 bits (1029), Expect = e-112
Identities = 173/185 (93%), Positives = 177/185 (95%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSL+LPCPSMPWPCPHPALALHWSCPALALPWP PCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALPWPRPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESM+WPWTCLAILCP P+LSPPCSGP LALALLLVLPLLWPCSVFG ALCYPSPALPW
Sbjct: 61 PTESMRWPWTCLAILCPGPILSPPCSGPALALALLLVLPLLWPCSVFGRALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPG TLAFSTLALP PGLALPWPCPAMALALPCPCPGPGS+L L LALVL
Sbjct: 121 PWPYHGLLLPWPGPTLAFSTLALPFPGLALPWPCPAMALALPCPCPGPGSSLHLDLALVL 180
Query: 181 SCPWL 185
SCPWL
Sbjct: 181 SCPWL 185
>gi|239743851 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 386 bits (991), Expect = e-108
Identities = 170/185 (91%), Positives = 174/185 (94%), Gaps = 4/185 (2%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSL+LPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESMKWPWTCLAILCP P+LSPPCSGP LALALLLVLPLLWPCSVFG ALCYPSPALPW
Sbjct: 61 PTESMKWPWTCLAILCPGPILSPPCSGPALALALLLVLPLLWPCSVFGRALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPG TLAFSTLALP PG+ALPWPCPA+ALAL P PGPGSA L LALVL
Sbjct: 121 PWPYHGLLLPWPGPTLAFSTLALPFPGVALPWPCPALALAL--PYPGPGSA--LTLALVL 176
Query: 181 SCPWL 185
SCPWL
Sbjct: 177 SCPWL 181
>gi|239743848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 386 bits (991), Expect = e-108
Identities = 170/185 (91%), Positives = 174/185 (94%), Gaps = 4/185 (2%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSL+LPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESMKWPWTCLAILCP P+LSPPCSGP LALALLLVLPLLWPCSVFG ALCYPSPALPW
Sbjct: 61 PTESMKWPWTCLAILCPGPILSPPCSGPALALALLLVLPLLWPCSVFGRALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPG TLAFSTLALP PG+ALPWPCPA+ALAL P PGPGSA L LALVL
Sbjct: 121 PWPYHGLLLPWPGPTLAFSTLALPFPGVALPWPCPALALAL--PYPGPGSA--LTLALVL 176
Query: 181 SCPWL 185
SCPWL
Sbjct: 177 SCPWL 181
>gi|239743746 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 386 bits (991), Expect = e-108
Identities = 170/185 (91%), Positives = 174/185 (94%), Gaps = 4/185 (2%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSL+LPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESMKWPWTCLAILCP P+LSPPCSGP LALALLLVLPLLWPCSVFG ALCYPSPALPW
Sbjct: 61 PTESMKWPWTCLAILCPGPILSPPCSGPALALALLLVLPLLWPCSVFGRALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPG TLAFSTLALP PG+ALPWPCPA+ALAL P PGPGSA L LALVL
Sbjct: 121 PWPYHGLLLPWPGPTLAFSTLALPFPGVALPWPCPALALAL--PYPGPGSA--LTLALVL 176
Query: 181 SCPWL 185
SCPWL
Sbjct: 177 SCPWL 181
>gi|239758169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 380 bits (975), Expect = e-106
Identities = 170/185 (91%), Positives = 172/185 (92%), Gaps = 4/185 (2%)
Query: 1 MTLPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
MTLPWPSPGPSLVLPCPS+PWPCPHPALALHWSCPALALPWP PCLLPGLAFALPWPDPR
Sbjct: 1 MTLPWPSPGPSLVLPCPSVPWPCPHPALALHWSCPALALPWPRPCLLPGLAFALPWPDPR 60
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPW 120
PTESMKWPWTCLAILCP PVLSPPCSGP LALALLLVLPLLWPCSVFGHALCYPSPALPW
Sbjct: 61 PTESMKWPWTCLAILCPGPVLSPPCSGPALALALLLVLPLLWPCSVFGHALCYPSPALPW 120
Query: 121 PWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVL 180
PWPYHGLLLPWPG TLAFSTLALP P LALPWPCP +ALAL P PGPGSA L LALVL
Sbjct: 121 PWPYHGLLLPWPGPTLAFSTLALPFPDLALPWPCPTLALAL--PYPGPGSA--LTLALVL 176
Query: 181 SCPWL 185
SCPWL
Sbjct: 177 SCPWL 181
>gi|239745046 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 86.7 bits (213), Expect = 1e-17
Identities = 68/193 (35%), Positives = 82/193 (42%), Gaps = 58/193 (30%)
Query: 1 MTLPWPS-----PGPSLVLPCPSM----PWPCPHPALALHWSCP----------ALALPW 41
+ L WPS P P LV+ P + PW CP PAL L W P AL LP+
Sbjct: 13 LALSWPSGAIALPYPELVVLWPCLVLAAPWTCPGPALTLPWLLPCPHYGLALALALVLPY 72
Query: 42 PWPCLLPGLAFALPWPDPRPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLL 101
PWPC P+P P P ++ W VLS C +ALALL ++P
Sbjct: 73 PWPC---------PYPGPAPAAALALAWNL--------VLSRTCPDSAMALALLCLVPGP 115
Query: 102 WPCSVFGHALCYPSPALPWPWPYHG----LLLPWPGHTLAFSTLALPCPG--LALPWPCP 155
P P P L WP+ G ++ PW H A L C G + LPWP
Sbjct: 116 DPD---------PDPFLALHWPFPGPELAVVCPWSCHYPA-----LLCSGCVITLPWPYS 161
Query: 156 AM--ALALPCPCP 166
A ALALP P P
Sbjct: 162 AFDPALALPWPSP 174
Score = 75.5 bits (184), Expect = 2e-14
Identities = 66/179 (36%), Positives = 72/179 (40%), Gaps = 61/179 (34%)
Query: 22 PCPHPALALHWSCPALALPWP-----WPCLLPGLAFALPWPDPRPTESMKWPWTCLAILC 76
P P LAL W A+ALP+P WPCL+ A PW P P ++ W L
Sbjct: 7 PSPGTDLALSWPSGAIALPYPELVVLWPCLV----LAAPWTCPGPALTLPW-------LL 55
Query: 77 PCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYHGLLLPWPGHTL 136
PCP LALAL LVLP WPC YP PA P L L W
Sbjct: 56 PCPHYG-------LALALALVLPYPWPCP-------YPGPA-----PAAALALAW----- 91
Query: 137 AFSTLALPCPGLALPWPCP--AMALALPC--PCPGPGSALLLAL-------ALVLSCPW 184
L L CP AMALAL C P P P LAL L + CPW
Sbjct: 92 ----------NLVLSRTCPDSAMALALLCLVPGPDPDPDPFLALHWPFPGPELAVVCPW 140
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 47.4 bits (111), Expect = 7e-06
Identities = 58/178 (32%), Positives = 71/178 (39%), Gaps = 44/178 (24%)
Query: 8 PGPSLVLPCPSMPWPCPHPALAL---HWSCPALALPWPWPCLLPGLAFALPWPDPRPTES 64
P +L P PS P P P A L + ALA P P P A P P P
Sbjct: 1551 PASALASPFPSAPNPAPAQASLLAPASSASQALATPLA-PMAAPQTAILAPSPAPP---- 1605
Query: 65 MKWPWTCLAILCPCPVLSP-PCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWP 123
L P PVL+P P + PVLA + V P++ P S G +L SP +P P P
Sbjct: 1606 ----------LAPLPVLAPSPGAAPVLASSQTPV-PVMAPSSTPGTSLASASP-VPAPTP 1653
Query: 124 YHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVLS 181
+L P T+ LP P +P P P P S LALA L+
Sbjct: 1654 ---VLAPSSTQTM------LPAP--------------VPSPLPSPASTQTLALAPALA 1688
Score = 42.4 bits (98), Expect = 2e-04
Identities = 62/195 (31%), Positives = 75/195 (38%), Gaps = 30/195 (15%)
Query: 6 PSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESM 65
PSP P P +P P P A + +P P PG + A P P PT +
Sbjct: 1600 PSPAP----PLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVL 1655
Query: 66 KWPWTCLAILCPCPVLSP---PCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPW 122
T + P PV SP P S LALA L L +L +P P+P
Sbjct: 1656 APSST--QTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPT 1713
Query: 123 PYHGL-----LLPWPGHTLAFS---------TLAL-PCPGLALP---WPCPAMALALPCP 164
L L+P P TL+ + TL+L P P LA P PA L L
Sbjct: 1714 QTLSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTL--- 1770
Query: 165 CPGPGSALLLALALV 179
P SA LLA A V
Sbjct: 1771 APASSSASLLAPASV 1785
Score = 38.9 bits (89), Expect = 0.003
Identities = 36/102 (35%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 79 PVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYH-GLLLPWPGHTLA 137
P+L P S V L V P P V AL P P+ P P P LL P + A
Sbjct: 1524 PLLLAPTSSHVPGLNST-VAPACSPVLVPASALASPFPSAPNPAPAQASLLAPASSASQA 1582
Query: 138 FST----LALPCPGLALPWPCPAMALALPCPCPGPGSALLLA 175
+T +A P + P P P +A LP P PG+A +LA
Sbjct: 1583 LATPLAPMAAPQTAILAPSPAPPLA-PLPVLAPSPGAAPVLA 1623
Score = 32.7 bits (73), Expect = 0.18
Identities = 33/118 (27%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 71 CLAILCPCPVLSPP---CSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYHGL 127
C +L P L+ P P A A LL P S AL +P P P +
Sbjct: 1545 CSPVLVPASALASPFPSAPNPAPAQASLLA-----PASSASQALA--TPLAPMAAPQTAI 1597
Query: 128 LLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALVLSCPWL 185
L P P LA + P PG A + + P PG++L A + P L
Sbjct: 1598 LAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVL 1655
Score = 27.7 bits (60), Expect = 5.9
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 3 LPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPT 62
+P +P P +LP +P P P P+ S PA C P P P P
Sbjct: 2466 VPISAPNPITILPVHILPSP-PPPSQIPPCSSPA--------CTPPPACTPPPAHTPPPA 2516
Query: 63 ESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYP 114
+ TCL + P+L P S P+ A L L L + AL P
Sbjct: 2517 Q------TCL-VTPSSPLLLGPPSVPISASVTNLPLGLRPEAELCAQALASP 2561
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 45.1 bits (105), Expect = 4e-05
Identities = 50/162 (30%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 18 SMPWPCPHPALALHWSCPALALPWPWPCLLPGLAF------ALPWPDP-RPTESMKWPWT 70
++P P P P S P L + P P LPG+ A+P P P + TE + P
Sbjct: 854 NIPSPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPP 913
Query: 71 CLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYHGLLLP 130
L P + PP P L A +L LP L P + P A+P P P G +P
Sbjct: 914 PL----PGAGIPPP---PPLPGAGILPLPPL-PGAGIPPPPPLPGAAIPPPPPLPGAGIP 965
Query: 131 WPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
P P PG +P P P +P P P PG+ +
Sbjct: 966 LPP----------PLPGAGIPPPPPLPGAGIPPPPPLPGAGI 997
Score = 41.2 bits (95), Expect = 5e-04
Identities = 46/170 (27%), Positives = 61/170 (35%), Gaps = 26/170 (15%)
Query: 3 LPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPT 62
+P P P P +P P P P + L P +P P P LPG +P P P P
Sbjct: 942 IPPPPPLPGAAIPPPP---PLPGAGIPLPPPLPGAGIPPPPP--LPGAG--IPPPPPLPG 994
Query: 63 ESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPW 122
+ P P P P P+ + PL P + P +P P
Sbjct: 995 AGIPPP-------PPLPGAGIPPPPPLPGAGIPPPPPL--PGAGIPPPPPLPGAGIPPPP 1045
Query: 123 PYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
P G +P P P PG +P P P +P P P PG+ +
Sbjct: 1046 PLPGAGIPPPP----------PLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1085
Score = 40.8 bits (94), Expect = 7e-04
Identities = 47/173 (27%), Positives = 62/173 (35%), Gaps = 25/173 (14%)
Query: 4 PWPSPGPSLV----LPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDP 59
P P PG ++ LP +P P P P A+ P P P LPG +P P P
Sbjct: 923 PPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAG--IPPPPP 980
Query: 60 RPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALP 119
P + P P P P P+ + PL P + P +P
Sbjct: 981 LPGAGIPPP-------PPLPGAGIPPPPPLPGAGIPPPPPL--PGAGIPPPPPLPGAGIP 1031
Query: 120 WPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
P P G +P P P PG +P P P +P P P PG+ +
Sbjct: 1032 PPPPLPGAGIPPPP----------PLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1074
Score = 40.4 bits (93), Expect = 9e-04
Identities = 52/182 (28%), Positives = 68/182 (37%), Gaps = 33/182 (18%)
Query: 6 PSPGPSLVLPCP----SMPW-------PCPHPALALHWSCPALALPWPWPCLLPGLAFAL 54
PSP P LPC SMP P P P + + + P+ A+P P P L G
Sbjct: 856 PSPPP---LPCTESSSSMPGLGMVPPPPPPLPGMTVP-TLPSTAIPQPPP--LQGTEMLP 909
Query: 55 PWPDPRPTESMK----WPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHA 110
P P P P + P + L P P P P+ A+ PL P +
Sbjct: 910 PPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPL--PGAGIPLP 967
Query: 111 LCYPSPALPWPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGS 170
P +P P P G +P P P PG +P P P +P P P PG+
Sbjct: 968 PPLPGAGIPPPPPLPGAGIPPPP----------PLPGAGIPPPPPLPGAGIPPPPPLPGA 1017
Query: 171 AL 172
+
Sbjct: 1018 GI 1019
Score = 40.4 bits (93), Expect = 9e-04
Identities = 46/173 (26%), Positives = 62/173 (35%), Gaps = 36/173 (20%)
Query: 4 PWPSPG----PSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDP 59
P P PG P LP +P P P P + P + P P LPG +P P P
Sbjct: 1066 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGA--GIPPPPP 1123
Query: 60 RPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALP 119
P + P P P P P+ + + PL P +P
Sbjct: 1124 LPGAGIPPP-------PPLPGAGIPPPPPLPRVGIPPPPPL-------------PGAGIP 1163
Query: 120 WPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
P P G +P P P PG+ +P P P + +P P P PG+ +
Sbjct: 1164 PPPPLPGAGIPPPP----------PLPGVGIPPPPPLPGVGIPPPPPLPGAGI 1206
Score = 40.4 bits (93), Expect = 9e-04
Identities = 50/184 (27%), Positives = 65/184 (35%), Gaps = 36/184 (19%)
Query: 4 PWPSPG----PSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDP 59
P P PG P LP +P P P P + + P P P LPG +P P P
Sbjct: 1077 PPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAG--IPPPPP 1134
Query: 60 RPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALP 119
P + P P P + P P+ + PL P +P
Sbjct: 1135 LPGAGIPPP-------PPLPRVGIPPPPPLPGAGIPPPPPL-------------PGAGIP 1174
Query: 120 WPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
P P G+ +P P P PG+ +P P P +P P P PG + A A
Sbjct: 1175 PPPPLPGVGIPPPP----------PLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPAPP 1224
Query: 180 LSCP 183
L P
Sbjct: 1225 LPPP 1228
Score = 38.9 bits (89), Expect = 0.003
Identities = 51/179 (28%), Positives = 65/179 (36%), Gaps = 30/179 (16%)
Query: 1 MTLPWPSPGPSLVLPC-PSMPWPCPHPALALHW------SCPALALPWPWPCLLPGLAFA 53
M P P P P + +P PS P P P P +P P P LPG A
Sbjct: 875 MVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPP--LPG-AGI 931
Query: 54 LPWPDPRPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCY 113
LP P P P + P P P + P P+ + L PL P +
Sbjct: 932 LPLP-PLPGAGIPPP-------PPLPGAAIPPPPPLPGAGIPLPPPL--PGAGIPPPPPL 981
Query: 114 PSPALPWPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
P +P P P G +P P P PG +P P P +P P P PG+ +
Sbjct: 982 PGAGIPPPPPLPGAGIPPPP----------PLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1030
Score = 38.9 bits (89), Expect = 0.003
Identities = 44/165 (26%), Positives = 56/165 (33%), Gaps = 32/165 (19%)
Query: 8 PGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESMKW 67
P P LP +P P P P + P P P LPG A +P P P P +
Sbjct: 909 PPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAA--IPPPPPLPGAGIPL 966
Query: 68 PWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYHGL 127
P P P P P+ + PL P +P P P G
Sbjct: 967 P-------PPLPGAGIPPPPPLPGAGIPPPPPL-------------PGAGIPPPPPLPGA 1006
Query: 128 LLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
+P P P PG +P P P +P P P PG+ +
Sbjct: 1007 GIPPPP----------PLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1041
Score = 37.7 bits (86), Expect = 0.006
Identities = 51/176 (28%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 4 PWPSPG----PSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDP 59
P P PG P LP +P P P P + P P P LPG +P P P
Sbjct: 1033 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGA--GIPPPPP 1090
Query: 60 RPTESMKWPWTCLAILCPCPVLSPPCSG------PVLALALLLVLPLLWPCSVFGHALCY 113
P + P + P P PP G P L A + P L P +
Sbjct: 1091 LPGAGIPPPPPLPGVGIPPP---PPLPGAGIPPPPPLPGAGIPPPPPL-PGAGIPPPPPL 1146
Query: 114 PSPALPWPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPG 169
P +P P P G +P P P PG +P P P + +P P P PG
Sbjct: 1147 PRVGIPPPPPLPGAGIPPPP----------PLPGAGIPPPPPLPGVGIPPPPPLPG 1192
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1747 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1794
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1795 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1841
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1724 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1771
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1772 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1818
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1727 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1774
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1775 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1821
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1707 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1754
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1755 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1801
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1744 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1791
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1792 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1838
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1678 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1725
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1726 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1772
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1749 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1796
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1797 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1843
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 40.8 bits (94), Expect = 7e-04
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 75 LCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPS--PALPWPWPYHGLLLPWP 132
L P P +SPP P A A L P + P S+F C P P++P P P P
Sbjct: 1754 LPPPPPISPPSPPP--APAPLAPPPDISPFSLF----CPPPSPPSIPLPLP------PPT 1801
Query: 133 GHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSALLLALALV 179
L+ ST P P L P+P P PCP P SA L+ V
Sbjct: 1802 FFPLSVSTSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECV 1848
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 99 PLLWPCSVFGHALCYPSPALPWPWPYHGLLLPWPGHTLAFSTL------ALPCPGLALPW 152
PL FG A P PA P P P PG + S+L +LP G+ P
Sbjct: 919 PLQTALLAFGVASATPGPAAPLP-------SPTPGESPPASSLPQPEPSSLPAQGVPTPL 971
Query: 153 -PCPAMALALPCPCPGPG 169
P PAM +P PCPGPG
Sbjct: 972 APSPAMQPPVP-PCPGPG 988
Score = 28.1 bits (61), Expect = 4.5
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 4 PWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPW---PCLLPGLAFALPWPDPR 60
P PSP P P S+P P P S PA +P P P + P + P P
Sbjct: 939 PLPSPTPGESPPASSLPQPEPS-------SLPAQGVPTPLAPSPAMQPPVP-PCPGPGLE 990
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSG 87
+ + +W P +L P +G
Sbjct: 991 SSAASRWNGETEPPAAPAALLKVPGAG 1017
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 99 PLLWPCSVFGHALCYPSPALPWPWPYHGLLLPWPGHTLAFSTL------ALPCPGLALPW 152
PL FG A P PA P P P PG + S+L +LP G+ P
Sbjct: 1001 PLQTALLAFGVASATPGPAAPLP-------SPTPGESPPASSLPQPEPSSLPAQGVPTPL 1053
Query: 153 -PCPAMALALPCPCPGPG 169
P PAM +P PCPGPG
Sbjct: 1054 APSPAMQPPVP-PCPGPG 1070
Score = 28.1 bits (61), Expect = 4.5
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 4 PWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPW---PCLLPGLAFALPWPDPR 60
P PSP P P S+P P P S PA +P P P + P + P P
Sbjct: 1021 PLPSPTPGESPPASSLPQPEPS-------SLPAQGVPTPLAPSPAMQPPVP-PCPGPGLE 1072
Query: 61 PTESMKWPWTCLAILCPCPVLSPPCSG 87
+ + +W P +L P +G
Sbjct: 1073 SSAASRWNGETEPPAAPAALLKVPGAG 1099
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 114 PSPALPWPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSA 171
P+P P P P G P LA L++ C LALP P PA+A+A P P P P A
Sbjct: 675 PAPTQPAPTPTSG---PIGLRILAQQPLSVTCFSLALPSP-PAVAVASPAPAPAPSPA 728
Score = 27.3 bits (59), Expect = 7.7
Identities = 25/94 (26%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 55 PWPDPRPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYP 114
P P P E+ +C A P SPP GP L +L W
Sbjct: 969 PTPGPEKAEAAAGEESCGASPTPATSASPP--GPTLKARFRSLLETAW------------ 1014
Query: 115 SPALPWPWPYHGLLLPWPGHTLAFSTLALPCPGL 148
+GL LP GH + PCP L
Sbjct: 1015 ---------LNGLALPTWGHKSSRPDQPSPCPQL 1039
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 38.9 bits (89), Expect = 0.003
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 3 LPWPSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPT 62
+P+PSPG P+P P P A P A P PW + PG A+ P P P PT
Sbjct: 166 MPYPSPG----------PYPAPPPPQA-----PGAAPPVPWGTVPPG-AWGPPAPYPAPT 209
Query: 63 ESMKWPWTCLAILCPCPVLSPPCSGP 88
S P P V S P P
Sbjct: 210 GSYPTPGLYPTPSNPFQVPSGPSGAP 235
Score = 35.0 bits (79), Expect = 0.037
Identities = 40/127 (31%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Query: 6 PSPGPSLVLPCPSMPWP-CPHPALALHWSCPALALP-WPWPCLLPGLAFALPWP----DP 59
P PGP+ P P+MP+P P P A + PA A P PW + G PW
Sbjct: 108 PGPGPTGPYPTPNMPFPELPRPYGAP--TDPAAAGPLGPWGSMSSG-----PWAPGMGGQ 160
Query: 60 RPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLW---PCSVFGHALCYPSP 116
PT +M +P P P +PP P A P+ W P +G YP+P
Sbjct: 161 YPTPNMPYP-------SPGPYPAPP---PPQAPG--AAPPVPWGTVPPGAWGPPAPYPAP 208
Query: 117 ALPWPWP 123
+P P
Sbjct: 209 TGSYPTP 215
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 114 PSPALPWPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMAL-ALPCPCPGP 168
P P P P+P G P PG T +P PG P+P P M LP P P
Sbjct: 80 PPPGPPAPFPPSGPSCPPPGGPYPAPT--VPGPGPTGPYPTPNMPFPELPRPYGAP 133
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 37.7 bits (86), Expect = 0.006
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 6 PSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESM 65
P+P P+ + PW P P A + + PW P + P A PW P PT +
Sbjct: 242 PAPAPT------TDPWGGPAPMAAAVPTAAPTSDPWGGPPVPPA---ADPWGGPAPTPAS 292
Query: 66 KWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYH 125
PW A P P G A P W S G + PS + PW P
Sbjct: 293 GDPWRPAA---PAGPSVDPWGGTPAPAAGEGPTPDPWGSSDGGVPVSGPSASDPWT-PAP 348
Query: 126 GLLLPWPGHTLAFST 140
PW G ST
Sbjct: 349 AFSDPWGGSPAKPST 363
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 37.7 bits (86), Expect = 0.006
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 6 PSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESM 65
P+P P+ + PW P P A + + PW P + P A PW P PT +
Sbjct: 267 PAPAPT------TDPWGGPAPMAAAVPTAAPTSDPWGGPPVPPA---ADPWGGPAPTPAS 317
Query: 66 KWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYH 125
PW A P P G A P W S G + PS + PW P
Sbjct: 318 GDPWRPAA---PAGPSVDPWGGTPAPAAGEGPTPDPWGSSDGGVPVSGPSASDPWT-PAP 373
Query: 126 GLLLPWPGHTLAFST 140
PW G ST
Sbjct: 374 AFSDPWGGSPAKPST 388
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 37.7 bits (86), Expect = 0.006
Identities = 39/135 (28%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 6 PSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESM 65
P+P P+ + PW P P A + + PW P + P A PW P PT +
Sbjct: 353 PAPAPT------TDPWGGPAPMAAAVPTAAPTSDPWGGPPVPPA---ADPWGGPAPTPAS 403
Query: 66 KWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWPWPYH 125
PW A P P G A P W S G + PS + PW P
Sbjct: 404 GDPWRPAA---PAGPSVDPWGGTPAPAAGEGPTPDPWGSSDGGVPVSGPSASDPWT-PAP 459
Query: 126 GLLLPWPGHTLAFST 140
PW G ST
Sbjct: 460 AFSDPWGGSPAKPST 474
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 37.0 bits (84), Expect = 0.010
Identities = 52/182 (28%), Positives = 66/182 (36%), Gaps = 50/182 (27%)
Query: 2 TLPWPSPGPSLVLPC----PSMPWPCPH--------PALALHWSCPALALPWPWPCLLPG 49
T P P+P P+ PC P P P P+ P A H + +P P + P
Sbjct: 895 TAPRPNPTPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQ 954
Query: 50 LAFALPWPDPRPTESMKWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGH 109
P P P P+++ P P P LPL P
Sbjct: 955 ---PQPHPQPHPSQAFG----------PQPPQQP--------------LPLQHPHLFPPQ 987
Query: 110 ALCYPSPALPWPW-PYHGLL--LPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCP 166
A P P+P+ P G+L P P HT + PG A P PA + ALP P P
Sbjct: 988 APGLLPPQSPYPYAPQPGVLGQPPPPLHTQLY-------PGPAQD-PLPAHSGALPFPSP 1039
Query: 167 GP 168
GP
Sbjct: 1040 GP 1041
>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 36.2 bits (82), Expect = 0.017
Identities = 58/192 (30%), Positives = 71/192 (36%), Gaps = 25/192 (13%)
Query: 7 SPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESMK 66
SP +LP S+ +P HP L L + PA P P LL A + P
Sbjct: 62 SPTRPRLLP-RSLGYPLRHP-LDLGFQGPASVRPPSTPHLLSASALSAQLDSPARPHPRC 119
Query: 67 WPWTCLAILCPCPVLS-----------PPCSGPVLALALLLVLPLLWPCSVFGHALCYPS 115
+P L+ P P L PP + A L P S AL S
Sbjct: 120 YPPFALSAPRP-PALGASATAFRSSSDPPARPRLFRRASASPAQLRLP-SRLASAL---S 174
Query: 116 PALPWPWPYHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPC---PCPGPGS-A 171
L P P +LPW +L+ S L LP P WP + ALP PC P +
Sbjct: 175 AQLRLPHPSSPGVLPWRCLSLSVSDLKLPLPP---SWPWLGFSAALPAAFRPCSAPPAWP 231
Query: 172 LLLALALVLSCP 183
LL LAL P
Sbjct: 232 RLLPLALAFPVP 243
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 12 LVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESMKWPWTC 71
L LP PS P P L+L S L LP WP L G + ALP + WP
Sbjct: 177 LRLPHPSSPGVLPWRCLSLSVSDLKLPLPPSWPWL--GFSAALPAAFRPCSAPPAWPRLL 234
Query: 72 -LAILCPCPV----LSPPCSG---PVLALALLL 96
LA+ P P+ L PP G P LA LL
Sbjct: 235 PLALAFPVPLGRPRLPPPVFGSTRPALASPPLL 267
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.8 bits (81), Expect = 0.022
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 8 PGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESMKW 67
PGP+L PC P CP S A P+P P + +P+P ++
Sbjct: 41 PGPTLPPPCSPAPQQCP-------LSAANQASPFPSPSTIASTPLEVPFPQSSSGTALPL 93
Query: 68 PWTCLAILCPCPVLSPPCSGPVLALALLLVLPLL 101
A ++ PP S LALA ++ P L
Sbjct: 94 GTAPEAPTFLPNLIGPPISPAALALASPMIAPTL 127
Score = 28.1 bits (61), Expect = 4.5
Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 4 PWPSPGPSLV-LPCP----SMPWPCPHPALALHWSCPALALPWPWPCLLPGL-------- 50
P +P PS+V LP P + P P PAL++ S P A P P +P
Sbjct: 882 PKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPT 941
Query: 51 --AFALPWPDPRP-TESMKWPWTCLAILCPCPVLSPPCSGP 88
A P P P T S KW T A P P P P
Sbjct: 942 PPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSP 982
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 35.4 bits (80), Expect = 0.028
Identities = 48/169 (28%), Positives = 57/169 (33%), Gaps = 56/169 (33%)
Query: 6 PSPGPSLVLPCPSMPWPCPHPALALHWSCPALALPWPWPCLLPGLAFALPWPDPRPTESM 65
PSP P PS PWP P PA PA+ P+P P P P P P
Sbjct: 859 PSPVP------PSTPWPTP-PATT---PFPAVVQPYPLPVFSP-----RGGPQPLP---- 899
Query: 66 KWPWTCLAILCPCPVLSPPCSGPVLALALLLVLPLLWPCSVFGHALCYPSPALPWP--WP 123
P P PP + P LV P++ AL P+ P P +P
Sbjct: 900 -----------PAPTSVPPAAFPA-----PLVTPMV--------ALVLPNYLFPTPSSYP 935
Query: 124 YHGLLLPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCPCPGPGSAL 172
Y L P G P A P P++ P P P S L
Sbjct: 936 YGALQTPAEGP-----------PTPASHSPSPSLPALAPSPPHRPDSPL 973
Score = 30.8 bits (68), Expect = 0.69
Identities = 38/138 (27%), Positives = 48/138 (34%), Gaps = 35/138 (25%)
Query: 4 PWPSPGPSLVLPCPSMPWPC--------PHPALALHWSCPALALPWPWPCLLPGLAFALP 55
PWP+P + P P+P P P S P A +P P + P +A LP
Sbjct: 867 PWPTPPATTPFPAVVQPYPLPVFSPRGGPQPLPPAPTSVPPAA--FPAPLVTPMVALVLP 924
Query: 56 ---WPDPR--------------PTESMKWPWTCLAILCPCPVLSPP-------CSGPV-L 90
+P P PT + P L L P P P CS P+ L
Sbjct: 925 NYLFPTPSSYPYGALQTPAEGPPTPASHSPSPSLPALAPSPPHRPDSPLFNSRCSSPLQL 984
Query: 91 ALALLLVLPLLWPCSVFG 108
L L LP +V G
Sbjct: 985 NLLQLEELPRAEGAAVAG 1002
>gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 35.0 bits (79), Expect = 0.037
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 2 TLPWPSPGPSLVLPCPSMPWPCPHP-ALALHWSCPALALPWPWPCLLPGLAFALPWPDPR 60
TLP P P+ L C P+ C P L + P+ A +P+ C P F LP P
Sbjct: 95 TLPHCFPLPATSLSCARYPFLCTLPHCFPLPGTSPSCA-RYPFLCTSPH-CFPLPATSP- 151
Query: 61 PTESMKWPWTCLAILC-PCPVLSPPCS 86
++P+ C + C P P SP C+
Sbjct: 152 --SCARYPFLCTSPHCFPLPATSPSCA 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.146 0.596
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,509,101
Number of Sequences: 37866
Number of extensions: 861622
Number of successful extensions: 5509
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 4124
Number of HSP's gapped (non-prelim): 739
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.