Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239747124
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747124 PREDICTED: hypothetical protein XP_002343917 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747124 PREDICTED: hypothetical protein XP_002343917 [Homo ... 264 1e-71
gi|169212925 PREDICTED: similar to telomeric repeat binding fact... 249 6e-67
gi|89044853 PREDICTED: similar to telomeric repeat binding facto... 246 4e-66
gi|189409142 telomeric repeat binding factor 1 isoform 1 [Homo s... 231 2e-61
gi|189409140 telomeric repeat binding factor 1 isoform 2 [Homo s... 231 2e-61
gi|5032169 telomeric repeat binding factor 2 [Homo sapiens] 39 9e-04
gi|4504487 histidine rich calcium binding protein precursor [Hom... 35 0.017
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 33 0.064
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 32 0.14
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 32 0.14
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 32 0.19
gi|31317309 phosphatidylinositol-4-phosphate 5-kinase, type I, g... 31 0.24
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 31 0.24
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 30 0.71
gi|215422388 death-domain associated protein isoform a [Homo sap... 30 0.71
gi|215422366 death-domain associated protein isoform b [Homo sap... 30 0.71
gi|218505694 potassium channel tetramerisation domain containing... 30 0.71
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 29 0.92
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 29 0.92
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 29 0.92
gi|93004074 zinc finger protein 215 [Homo sapiens] 29 0.92
gi|166235182 transmembrane protein 77 [Homo sapiens] 29 1.2
gi|17975763 myelin transcription factor 1 [Homo sapiens] 29 1.2
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 29 1.2
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 29 1.2
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens] 28 1.6
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 28 2.1
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 28 2.1
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 28 2.1
>gi|239747124 PREDICTED: hypothetical protein XP_002343917 [Homo
sapiens]
Length = 130
Score = 264 bits (675), Expect = 1e-71
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAVAAG 60
MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAVAAG
Sbjct: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAVAAG 60
Query: 61 WMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAAGK 120
WMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAAGK
Sbjct: 61 WMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAAGK 120
Query: 121 TLDAQFENDE 130
TLDAQFENDE
Sbjct: 121 TLDAQFENDE 130
>gi|169212925 PREDICTED: similar to telomeric repeat binding factor
(NIMA-interacting) 1 [Homo sapiens]
Length = 405
Score = 249 bits (635), Expect = 6e-67
Identities = 125/132 (94%), Positives = 127/132 (96%), Gaps = 2/132 (1%)
Query: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEA--VA 58
MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVA+AEA VA
Sbjct: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAEAEAEAVA 60
Query: 59 AGWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAA 118
AGWML+FL FSLCRAFRDGRSEDFCR RN AEAIIHGLSSLTAYQLRTIYICQFLTRIAA
Sbjct: 61 AGWMLEFLCFSLCRAFRDGRSEDFCRTRNSAEAIIHGLSSLTAYQLRTIYICQFLTRIAA 120
Query: 119 GKTLDAQFENDE 130
GKTLDAQFENDE
Sbjct: 121 GKTLDAQFENDE 132
>gi|89044853 PREDICTED: similar to telomeric repeat binding factor
(NIMA-interacting) 1 [Homo sapiens]
Length = 405
Score = 246 bits (628), Expect = 4e-66
Identities = 124/132 (93%), Positives = 126/132 (95%), Gaps = 2/132 (1%)
Query: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEA--VA 58
MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVA+AEA VA
Sbjct: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAEAEAEAVA 60
Query: 59 AGWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAA 118
AGWML+FL FSLCRAF DGRSEDFCR RN AEAIIHGLSSLTAYQLRTIYICQFLTRIAA
Sbjct: 61 AGWMLEFLCFSLCRAFPDGRSEDFCRTRNSAEAIIHGLSSLTAYQLRTIYICQFLTRIAA 120
Query: 119 GKTLDAQFENDE 130
GKTLDAQFENDE
Sbjct: 121 GKTLDAQFENDE 132
>gi|189409142 telomeric repeat binding factor 1 isoform 1 [Homo
sapiens]
Length = 439
Score = 231 bits (588), Expect = 2e-61
Identities = 119/131 (90%), Positives = 121/131 (92%), Gaps = 3/131 (2%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEE---DAGLVAKAEAVAA 59
ADGRDADPTEEQMAETERNDEEQFECQE L+CQVQVGAPEEEEE DAGLVA+AEAVAA
Sbjct: 16 ADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAA 75
Query: 60 GWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAAG 119
GWMLDFL SLCRAFRDGRSEDF R RN AEAIIHGLSSLTA QLRTIYICQFLTRIAAG
Sbjct: 76 GWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAG 135
Query: 120 KTLDAQFENDE 130
KTLDAQFENDE
Sbjct: 136 KTLDAQFENDE 146
>gi|189409140 telomeric repeat binding factor 1 isoform 2 [Homo
sapiens]
Length = 419
Score = 231 bits (588), Expect = 2e-61
Identities = 119/131 (90%), Positives = 121/131 (92%), Gaps = 3/131 (2%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEE---DAGLVAKAEAVAA 59
ADGRDADPTEEQMAETERNDEEQFECQE L+CQVQVGAPEEEEE DAGLVA+AEAVAA
Sbjct: 16 ADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAA 75
Query: 60 GWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQFLTRIAAG 119
GWMLDFL SLCRAFRDGRSEDF R RN AEAIIHGLSSLTA QLRTIYICQFLTRIAAG
Sbjct: 76 GWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAG 135
Query: 120 KTLDAQFENDE 130
KTLDAQFENDE
Sbjct: 136 KTLDAQFENDE 146
>gi|5032169 telomeric repeat binding factor 2 [Homo sapiens]
Length = 500
Score = 39.3 bits (90), Expect = 9e-04
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 52 AKAEAVAAGWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLSSLTAYQLRTIYICQ 111
A+ E W+L F RAFR R DF +IR+ +A++ R + + Q
Sbjct: 46 ARLEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQ 105
Query: 112 FLTRIAAGKTLDAQFE 127
L+RI G+ LD F+
Sbjct: 106 CLSRIEEGENLDCSFD 121
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 35.0 bits (79), Expect = 0.017
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 4 DGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAP-------EEEEEDAGL 50
+G +E+ E ++ +EE+ E +ER + + +VGAP EEEEE+ GL
Sbjct: 524 EGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEEEGL 577
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 33.1 bits (74), Expect = 0.064
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAV 57
A+G++ + EE+ E E DEE+ E +E + + + EEEEE A VA E +
Sbjct: 729 ANGKEEEEEEEEDEEEEEEDEEEEE-EEEEEEEEEEEEEEEEEEAAAAVALGEVL 782
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 8 ADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAVAAGWML 63
A+ EE+ E E DEE+ E E + + + EEEEE+ A AVA G +L
Sbjct: 729 ANGKEEE--EEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGEVL 782
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 32.0 bits (71), Expect = 0.14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 12 EEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
E+ E E D+E E QE +C+ G EEEEE+
Sbjct: 1018 EDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE 1053
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 32.0 bits (71), Expect = 0.14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 12 EEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
E+ E E D+E E QE +C+ G EEEEE+
Sbjct: 1034 EDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE 1069
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform
3 [Homo sapiens]
Length = 2059
Score = 31.6 bits (70), Expect = 0.19
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 6 RDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
RD + EE+M +E +EE+ E E + +V+ ++EE+D
Sbjct: 6 RDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDD 47
>gi|31317309 phosphatidylinositol-4-phosphate 5-kinase, type I,
gamma [Homo sapiens]
Length = 668
Score = 31.2 bits (69), Expect = 0.24
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAVAA 59
+ G+D P EE AE D +Q Q C V++ P +EEDAG+ A +A
Sbjct: 555 SSGQDGRPQEEPPAE---EDLQQITVQVEPACSVEIVVP--KEEDAGVEASPAGASA 606
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 31.2 bits (69), Expect = 0.24
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 PADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAVAAG 60
P + ++ + EE+ +E E DEE ++ + G EEEEE +GL + E A+G
Sbjct: 368 PEEMKNLETQEEEFSELEELDEEASGMEDD---EDTSGLEEEEEEPSGLEEEEEEEASG 423
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 29.6 bits (65), Expect = 0.71
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 4 DGRDADPTEEQMAETERNDEEQFECQERLKC-QVQVGAPEEEEEDAGLVAKAEAVAAG 60
D D + EE+ E E +EE + +E Q+Q G ++EEED + E AAG
Sbjct: 437 DEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEED-----EEEEAAAG 489
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 29.6 bits (65), Expect = 0.71
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 4 DGRDADPTEEQMAETERNDEEQFECQERLKC-QVQVGAPEEEEEDAGLVAKAEAVAAG 60
D D + EE+ E E +EE + +E Q+Q G ++EEED + E AAG
Sbjct: 437 DEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEED-----EEEEAAAG 489
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 29.6 bits (65), Expect = 0.71
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 4 DGRDADPTEEQMAETERNDEEQFECQERLKC-QVQVGAPEEEEEDAGLVAKAEAVAAG 60
D D + EE+ E E +EE + +E Q+Q G ++EEED + E AAG
Sbjct: 449 DEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEED-----EEEEAAAG 501
>gi|218505694 potassium channel tetramerisation domain containing
1 isoform b [Homo sapiens]
Length = 865
Score = 29.6 bits (65), Expect = 0.71
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 6 RDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAG 49
R + P E E +EE+ E QE VQ+ EEEEED G
Sbjct: 44 RHSRPHYCSAGEEEEEEEEEDEIQE-----VQITGDEEEEEDGG 82
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 0.92
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 MPADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEAV 57
+P + + + EE++ E E+ +EE+ E +E + + + EEEEE G + E V
Sbjct: 116 LPVEEEEVEEEEEEVEEEEK-EEEKEEDEEEEEKEEEKEEDEEEEEKEGKKMEEEKV 171
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 29.3 bits (64), Expect = 0.92
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 13 EQMAETERNDEEQFECQERLKCQVQVGAPEEEEE------DAGLVAKAEAVAAG 60
E+ AETE +E + + +E + +P E+EE DA + K E+VA+G
Sbjct: 943 EEKAETEEAEEPEEDGEEHVCVSASKHSPTEDEESAKAEADAYIREKRESVASG 996
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 7 DADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAE-------AVAA 59
D D E+ E E +EE+ E +++ G + E+E+ L+ +E ++
Sbjct: 79 DEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQDSEDEEERLINLSELTPYILCSICK 138
Query: 60 GWMLDFLRFSLC 71
G+++D + C
Sbjct: 139 GYLIDATTITEC 150
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 7 DADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAE-------AVAA 59
D D E+ E E +EE+ E +++ G + E+E+ L+ +E ++
Sbjct: 79 DEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQDSEDEEERLINLSELTPYILCSICK 138
Query: 60 GWMLDFLRFSLC 71
G+++D + C
Sbjct: 139 GYLIDATTITEC 150
>gi|93004074 zinc finger protein 215 [Homo sapiens]
Length = 517
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 10 PTEEQMAETERNDEEQFECQERLK----------CQVQVGAPEEE 44
P E + ET +EE FEC E K C +QVG P +
Sbjct: 285 PQEAFIPETIYTEEEDFECSENKKSFDINSVSSICAIQVGIPSRK 329
>gi|166235182 transmembrane protein 77 [Homo sapiens]
Length = 266
Score = 28.9 bits (63), Expect = 1.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 46 EDAGLVAKAEAVAAGWMLDFLRFSLCRAFRDGRSEDFCRIRNRAEAIIHGLS 97
ED G V AA W + F F + DF +I R EA +HGL+
Sbjct: 198 EDKGYVLHMITTAAEWSMSFSFFGFFLTY----IRDFQKISLRVEANLHGLT 245
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 7 DADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
+ D EE+ E E DEE+ E +E + + + EEEEE+
Sbjct: 259 EEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEE 299
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 DADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDA 48
+ + EE+ E E +EE+ E +E + + + EEEEE+A
Sbjct: 266 EEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEA 307
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 7 DADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
D + EE+ E E +EE+ E +E + + + EEEEE+
Sbjct: 261 DEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEE 301
Score = 26.2 bits (56), Expect = 7.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 4 DGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
+ + + EE+ E E +EE+ E +E + + + EEEEE+
Sbjct: 260 EDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 303
Score = 26.2 bits (56), Expect = 7.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 4 DGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
D + + EE+ + E +EE+ E +E + + + EEEEE+
Sbjct: 261 DEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 304
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 28.9 bits (63), Expect = 1.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEEDAG 49
+DG D++ EE+ E E +EE+ + +E + EEEEE+ G
Sbjct: 854 SDGGDSEEEEEEEEEQEEEEEEEEQEEEEEE--------EEEEEEKG 892
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 22 DEEQFECQERLKCQVQVGAPEEEEEDAGLVAKAEA 56
+E++ E QE K Q++ PEEEEE+ + EA
Sbjct: 357 NEKELEAQEARKAQLENHEPEEEEEEEMETEEKEA 391
>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
Length = 439
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 16 AETERNDEEQFECQERLKCQVQVGAPEEEEEDA 48
A E +DEE E Q K + Q PEE+EED+
Sbjct: 48 APMESSDEEDEEFQFIKKAKEQEAEPEEQEEDS 80
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
+DG +A+ EE+ + EE+ E +E + + + EEEE+D
Sbjct: 19 SDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDD 63
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
+DG +A+ EE+ + EE+ E +E + + + EEEE+D
Sbjct: 19 SDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDD 63
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 3 ADGRDADPTEEQMAETERNDEEQFECQERLKCQVQVGAPEEEEED 47
+DG +A+ EE+ + EE+ E +E + + + EEEE+D
Sbjct: 19 SDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDD 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,042,218
Number of Sequences: 37866
Number of extensions: 211960
Number of successful extensions: 1576
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 209
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.