Guide to the Human Genome
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Name: LOC646359 Sequence: fasta or formatted (405aa) NCBI GI: 89044853
Description:

PREDICTED: similar to telomeric repeat binding factor (NIMA-interacting) 1

Referenced in:

Telomere Functions

Other entries for this name:
alt prot [405aa] PREDICTED: similar to telomeric repeat binding factor (NIMA-inter...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         29           3
 C cysteine            2.0          8           1
 D aspartate           4.7         19           1
 E glutamate          10.9         44           5
 F phenylalanine       4.2         17           2
 G glycine             4.0         16           1
 H histidine           2.2          9           1
 I isoleucine          4.9         20           2
 K lysine              9.1         37           4
 L leucine             8.4         34           2
 M methionine          2.5         10           2
 N asparagine          4.2         17           2
 P proline             2.5         10           1
 Q glutamine           5.7         23           3
 R arginine            6.7         27           2
 S serine              7.7         31           2
 T threonine           5.9         24           2
 V valine              4.0         16           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to telomeric repeat binding facto... 
LOC646359             0.994   PREDICTED: similar to telomeric repeat binding fact...
TERF1                 0.908   telomeric repeat binding factor 1 isoform 2 
TERF1                 0.893   telomeric repeat binding factor 1 isoform 1 
LOC100289185          0.282   PREDICTED: hypothetical protein XP_002343917 
TERF2                 0.084   telomeric repeat binding factor 2 
MYBL2                 0.022   MYB-related protein B 
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform ...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
MYB                   0.015   v-myb myeloblastosis viral oncogene homolog isoform...
ATRX                  0.015   transcriptional regulator ATRX isoform 2 
ATRX                  0.015   transcriptional regulator ATRX isoform 1 
SMC6                  0.015   SMC6 protein 
SMC6                  0.015   SMC6 protein 
LOC100133758          0.015   PREDICTED: hypothetical protein, partial 
GOLGB1                0.014   golgi autoantigen, golgin subfamily b, macrogolgin ...
HRC                   0.013   histidine rich calcium binding protein precursor [Hom...
CHD1                  0.013   chromodomain helicase DNA binding protein 1 
LOC100133599          0.011   PREDICTED: hypothetical protein 
ZEB1                  0.011   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.011   zinc finger E-box binding homeobox 1 isoform b [Hom...
LOC100286959          0.011   PREDICTED: hypothetical protein XP_002343921 
CDC5L                 0.011   CDC5-like 
TTBK1                 0.011   tau tubulin kinase 1 
BAI1                  0.011   brain-specific angiogenesis inhibitor 1 precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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