Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC67 Sequence: fasta or formatted (604aa) NCBI GI: 116812628
Description:

coiled-coil domain containing 67

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         27           2
 C cysteine            1.7         10           1
 D aspartate           4.6         28           3
 E glutamate          12.3         74           3
 F phenylalanine       2.2         13           1
 G glycine             2.2         13           1
 H histidine           2.6         16           1
 I isoleucine          4.1         25           2
 K lysine              9.4         57           2
 L leucine            12.4         75           2
 M methionine          3.8         23           2
 N asparagine          6.1         37           2
 P proline             3.5         21           2
 Q glutamine           9.1         55           2
 R arginine            5.5         33           1
 S serine              6.6         40           3
 T threonine           4.5         27           1
 V valine              2.3         14           1
 W tryptophan          0.5          3           1
 Y tyrosine            2.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 67 
CEP63                 0.177   centrosomal protein 63 isoform a 
CEP63                 0.169   centrosomal protein 63 isoform d 
CEP63                 0.168   centrosomal protein 63 isoform c 
CEP63                 0.157   centrosomal protein 63 isoform b 
CGNL1                 0.047   cingulin-like 1 
CENPE                 0.045   centromere protein E 
MYH9                  0.044   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.044   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
ROCK1                 0.042   Rho-associated, coiled-coil containing protein kinase...
MYH13                 0.039   myosin, heavy polypeptide 13, skeletal muscle [Homo...
C14orf145             0.039   hypothetical protein LOC145508 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 1 
GOLGA1                0.037   golgin 97 
PMFBP1                0.037   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.037   polyamine modulated factor 1 binding protein 1 isof...
TRIP11                0.037   thyroid hormone receptor interactor 11 
UACA                  0.037   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.037   uveal autoantigen with coiled-coil domains and ankyr...
TPR                   0.037   nuclear pore complex-associated protein TPR 
KTN1                  0.037   kinectin 1 isoform c 
MYO18A                0.037   myosin 18A isoform b 
MYO18A                0.037   myosin 18A isoform a 
KIF20B                0.037   M-phase phosphoprotein 1 
ANKRD26               0.037   ankyrin repeat domain 26 
DST                   0.036   dystonin isoform 1e precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press