Search of human proteins with 239746849

Search of human proteins with 239746849

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...   292   7e-80
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...   292   7e-80
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]        244   2e-65
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...   230   2e-61
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...   230   2e-61
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...   202   7e-53
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe...   165   1e-41
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe...   165   1e-41
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe...   165   1e-41
gi|4826974 RNA binding motif protein, Y-linked, family 1, member...   164   2e-41
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe...   164   2e-41
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe...   164   2e-41
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa...   147   4e-36
gi|4502847 cold inducible RNA binding protein [Homo sapiens]          108   2e-24
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                  93   6e-20
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     72   1e-13
gi|9558733 transformer-2 alpha [Homo sapiens]                          72   1e-13
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     69   2e-12
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    67   4e-12
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    67   4e-12
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    67   4e-12
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    67   4e-12
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]      67   6e-12
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          66   8e-12
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          66   8e-12
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    64   5e-11
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    63   7e-11
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...    63   7e-11
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      63   7e-11
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]        63   7e-11

>gi|239752336 PREDICTED: similar to RNA binding motif protein,
           X-linked [Homo sapiens]
          Length = 138

 Score =  292 bits (747), Expect = 7e-80
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA
Sbjct: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120

Query: 121 EPPSRGGHMDDWWIFHEF 138
           EPPSRGGHMDDWWIFHEF
Sbjct: 121 EPPSRGGHMDDWWIFHEF 138


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
           sapiens]
          Length = 138

 Score =  292 bits (747), Expect = 7e-80
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA
Sbjct: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120

Query: 121 EPPSRGGHMDDWWIFHEF 138
           EPPSRGGHMDDWWIFHEF
Sbjct: 121 EPPSRGGHMDDWWIFHEF 138


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score =  244 bits (622), Expect = 2e-65
 Identities = 120/131 (91%), Positives = 123/131 (93%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EADR GK FIGGLNTETN+KALEAVFGKYG+IVEV LMKD ETNKSRGFAF+TFE PA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR LRGGRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120

Query: 121 EPPSRGGHMDD 131
            PPSRGGHMDD
Sbjct: 121 GPPSRGGHMDD 131


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score =  230 bits (587), Expect = 2e-61
 Identities = 113/131 (86%), Positives = 117/131 (89%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EADR GK FIGGLNTETN+KALE VFGKYG+IVEV L+KD ETNKSRGFAF+TFE PA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPR    GRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120

Query: 121 EPPSRGGHMDD 131
            PPSRGGHMDD
Sbjct: 121 GPPSRGGHMDD 131


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score =  230 bits (587), Expect = 2e-61
 Identities = 113/131 (86%), Positives = 117/131 (89%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EADR GK FIGGLNTETN+KALE VFGKYG+IVEV L+KD ETNKSRGFAF+TFE PA
Sbjct: 1   MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPR    GRGGSGGTR
Sbjct: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120

Query: 121 EPPSRGGHMDD 131
            PPSRGGHMDD
Sbjct: 121 GPPSRGGHMDD 131


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score =  202 bits (514), Expect = 7e-53
 Identities = 105/131 (80%), Positives = 110/131 (83%), Gaps = 1/131 (0%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EADR GK FIGGLN ET++KALEA FGKYG+IVEV LMKD ETNKSRGFAF+TFE PA
Sbjct: 1   MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAK AARDMNGKSLDGKAIKV QATKP+FES RRG PPPPRSRG PR LRG RGG GG R
Sbjct: 61  DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119

Query: 121 EPPSRGGHMDD 131
             PSRGG  DD
Sbjct: 120 RSPSRGGPDDD 130


>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
           [Homo sapiens]
          Length = 496

 Score =  165 bits (417), Expect = 1e-41
 Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 3/133 (2%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EAD  GK FIGGLN ETN+K L+AVFGK+G I EV L+KD  T+KSRGFAFITFE PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+S GRR PP   R+R P   LR  RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RE-PPSRGGHMDD 131
           R   PS+ GH+DD
Sbjct: 120 RGWLPSQEGHLDD 132


>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
           [Homo sapiens]
          Length = 496

 Score =  165 bits (417), Expect = 1e-41
 Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 3/133 (2%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EAD  GK FIGGLN ETN+K L+AVFGK+G I EV L+KD  T+KSRGFAFITFE PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+S GRR PP   R+R P   LR  RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RE-PPSRGGHMDD 131
           R   PS+ GH+DD
Sbjct: 120 RGWLPSQEGHLDD 132


>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
           [Homo sapiens]
          Length = 496

 Score =  165 bits (417), Expect = 1e-41
 Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 3/133 (2%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EAD  GK FIGGLN ETN+K L+AVFGK+G I EV L+KD  T+KSRGFAFITFE PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+S GRR PP   R+R P   LR  RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RE-PPSRGGHMDD 131
           R   PS+ GH+DD
Sbjct: 120 RGWLPSQEGHLDD 132


>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
           [Homo sapiens]
          Length = 496

 Score =  164 bits (416), Expect = 2e-41
 Identities = 91/133 (68%), Positives = 101/133 (75%), Gaps = 3/133 (2%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EAD  GK FIGGLN ETN+K L+AVFGK+G I EV L+KD  T+KSRGFAFITFE PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
           DAK+AA+DMNGKSL GKAIKVEQA KPSF+S GRR PP   R+R P   LR  RG  GGT
Sbjct: 60  DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119

Query: 120 RE-PPSRGGHMDD 131
           R   PS  GH+DD
Sbjct: 120 RGWLPSHEGHLDD 132


>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
           [Homo sapiens]
          Length = 496

 Score =  164 bits (415), Expect = 2e-41
 Identities = 91/133 (68%), Positives = 101/133 (75%), Gaps = 3/133 (2%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EAD  GK FIGGLN ETN+K L+AVFGK+G I EV L+KD  T+KSRGFAFITFE PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
           DAK+AA+DMNG SL GKAIKVEQA KPSF+S GRR PP   R+R P   LR  RG SGGT
Sbjct: 60  DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119

Query: 120 RE-PPSRGGHMDD 131
           R   PS  GH+DD
Sbjct: 120 RGWLPSHEGHLDD 132


>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
           [Homo sapiens]
          Length = 496

 Score =  164 bits (415), Expect = 2e-41
 Identities = 91/133 (68%), Positives = 101/133 (75%), Gaps = 3/133 (2%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EAD  GK FIGGLN ETN+K L+AVFGK+G I EV L+KD  T+KSRGFAFITFE PA
Sbjct: 1   MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
           DAK+AA+DMNG SL GKAIKVEQA KPSF+S GRR PP   R+R P   LR  RG SGGT
Sbjct: 60  DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119

Query: 120 RE-PPSRGGHMDD 131
           R   PS  GH+DD
Sbjct: 120 RGWLPSHEGHLDD 132


>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
           sapiens]
          Length = 1067

 Score =  147 bits (370), Expect = 4e-36
 Identities = 81/141 (57%), Positives = 94/141 (66%), Gaps = 10/141 (7%)

Query: 1   MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
           M EADR  K FIGGLN +T++KAL+A FGKYG I++V LMKD +TNKSRGFAF+TFE PA
Sbjct: 1   MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60

Query: 61  DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
           DAK AARDMNGK LDGKAI V Q  KP+F+S  R  PP P S    R     RGG    +
Sbjct: 61  DAKAAARDMNGKYLDGKAIMVAQTIKPAFKSS-RWVPPTPGSGSRSRFSHRTRGGGSSPQ 119

Query: 121 EPPSRG---------GHMDDW 132
            PPS+G         G+ D W
Sbjct: 120 RPPSQGRPDDGRGYAGYFDLW 140


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score =  108 bits (269), Expect = 2e-24
 Identities = 64/122 (52%), Positives = 79/122 (64%), Gaps = 8/122 (6%)

Query: 8   GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
           GK F+GGL+ +TN+++LE VF KYGQI EV ++KD ET +SRGF F+TFE   DAKDA  
Sbjct: 6   GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65

Query: 68  DMNGKSLDGKAIKVEQATKPSFESGR--RGPPPPPRSRGPPRVLRGGRG-GSGGTREPPS 124
            MNGKS+DG+ I+V+QA K S    R  RG      S G     RGGRG G G +R    
Sbjct: 66  AMNGKSVDGRQIRVDQAGKSSDNRSRGYRG-----GSAGGRGFFRGGRGRGRGFSRGGGD 120

Query: 125 RG 126
           RG
Sbjct: 121 RG 122


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score = 93.2 bits (230), Expect = 6e-20
 Identities = 56/120 (46%), Positives = 69/120 (57%), Gaps = 2/120 (1%)

Query: 8   GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
           GK F+GGLN  T+++ALE  F  +G I EV ++KD ET +SRGF FITF  P  A  A R
Sbjct: 6   GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65

Query: 68  DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREPPSRGG 127
            MNG+SLDG+ I+V+ A K +   G RG       RG      GG  G G  R   SR G
Sbjct: 66  AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 13/117 (11%)

Query: 12  IGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNG 71
           +  L   T+   L  VF KYG++ +V++ +D  T +SRGFAF+ F    DA+DA   M+G
Sbjct: 18  VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77

Query: 72  KSLDGKAIKVEQA---TKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREPPSR 125
             LDG+ ++V+ A     P     RRGPPP           R G GG G     P R
Sbjct: 78  AVLDGRELRVQMARYGRPPDSHHSRRGPPP----------RRYGGGGYGRRSRSPRR 124


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 14  GLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNGKS 73
           GL+  T ++ L  VF +YG +  V+++ D  T +SRGFAF+ FER  D+K+A    NG  
Sbjct: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184

Query: 74  LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGG 118
           LDG+ I+V+ +      + R   P P    G P    GG GG GG
Sbjct: 185 LDGRRIRVDYSI-----TKRAHTPTPGIYMGRPTHSGGGGGGGGG 224


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 21/133 (15%)

Query: 14  GLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNGKS 73
           GL+  T ++ L  VF KYG I +V ++ D ++ +SRGFAF+ FE   DAK+A    NG  
Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183

Query: 74  LDGKAIKVEQAT--------------KPSFESGRRGP-PPPPRSRG------PPRVLRGG 112
           LDG+ I+V+ +               +P++ S RR         RG        R  RGG
Sbjct: 184 LDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGG 243

Query: 113 RGGSGGTREPPSR 125
            GG GG R    R
Sbjct: 244 GGGGGGWRAAQDR 256


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 11  FIGGLNTETNKKALEAVFGKYGQIVE--------VHLMKDCETNKSRGFAFITFERPADA 62
           ++ GLN       L   F + G +          +H+  D ET K +G A +++E P  A
Sbjct: 308 YVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 367

Query: 63  KDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREP 122
           K A    +GK   G  +KV  A K    +  RG  PP   RG P  LRGG GG GG   P
Sbjct: 368 KAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGP 427

Query: 123 PSRGG 127
             R G
Sbjct: 428 MGRMG 432



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 83  QATKPSFESGRRGPPPPP---RSRGPPRVLRGGRGG 115
           Q   P  E     P PPP   R RG P  +RGGRGG
Sbjct: 486 QCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGG 521


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 11  FIGGLNTETNKKALEAVFGKYGQIVE--------VHLMKDCETNKSRGFAFITFERPADA 62
           ++ GLN       L   F + G +          +H+  D ET K +G A +++E P  A
Sbjct: 363 YVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 422

Query: 63  KDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREP 122
           K A    +GK   G  +KV  A K    +  RG  PP   RG P  LRGG GG GG   P
Sbjct: 423 KAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGP 482

Query: 123 PSRGG 127
             R G
Sbjct: 483 MGRMG 487



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 83  QATKPSFESGRRGPPPPP---RSRGPPRVLRGGRGG 115
           Q   P  E     P PPP   R RG P  +RGGRGG
Sbjct: 541 QCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGG 576


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 11  FIGGLNTETNKKALEAVFGKYGQIVE--------VHLMKDCETNKSRGFAFITFERPADA 62
           ++ GLN       L   F + G +          +H+  D ET K +G A +++E P  A
Sbjct: 369 YVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 428

Query: 63  KDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREP 122
           K A    +GK   G  +KV  A K    +  RG  PP   RG P  LRGG GG GG   P
Sbjct: 429 KAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGP 488

Query: 123 PSRGG 127
             R G
Sbjct: 489 MGRMG 493



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 83  QATKPSFESGRRGPPPPP---RSRGPPRVLRGGRGG 115
           Q   P  E     P PPP   R RG P  +RGGRGG
Sbjct: 547 QCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGG 582


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 11  FIGGLNTETNKKALEAVFGKYGQIVE--------VHLMKDCETNKSRGFAFITFERPADA 62
           ++ GLN       L   F + G +          +H+  D ET K +G A +++E P  A
Sbjct: 364 YVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 423

Query: 63  KDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREP 122
           K A    +GK   G  +KV  A K    +  RG  PP   RG P  LRGG GG GG   P
Sbjct: 424 KAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGP 483

Query: 123 PSRGG 127
             R G
Sbjct: 484 MGRMG 488



 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 83  QATKPSFESGRRGPPPPP---RSRGPPRVLRGGRGG 115
           Q   P  E     P PPP   R RG P  +RGGRGG
Sbjct: 542 QCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGG 577


>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
          Length = 164

 Score = 66.6 bits (161), Expect = 6e-12
 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 21/114 (18%)

Query: 9   KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARD 68
           K ++G L    NK  LE  FG YG +  V + ++       GFAF+ FE P DA DA R+
Sbjct: 11  KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRE 65

Query: 69  MNGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPR 107
           ++G++L G  ++VE +      S  RGPP               PPPR R P R
Sbjct: 66  LDGRTLCGCRVRVELSNGEK-RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 66.2 bits (160), Expect = 8e-12
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 18/123 (14%)

Query: 4   ADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAK 63
           AD +GK F+GGL+  T ++ L + F +YG++V+  +MKD  TN+SRGF F+ F+ P    
Sbjct: 6   ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP---- 61

Query: 64  DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRVLRGGRGGSGGTREP 122
                          +    A++P    GR   P P   RG  P   R   G   G R  
Sbjct: 62  -------------NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108

Query: 123 PSR 125
            S+
Sbjct: 109 NSK 111



 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 9   KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARD 68
           K F+GG+     +  L   F K+G + EV ++ D E  + RGF FITFE    + D A +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE-DEQSVDQAVN 172

Query: 69  MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREPPSRGGH 128
           M+   + GK ++V++A     +S  + P  P  S+   RV+     G  G   P  + G+
Sbjct: 173 MHFHDIMGKKVEVKRAEPR--DSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGY 230



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 87  PSFESGRRGPPPPPRSRGPPRV 108
           P F  G   PPPPP    PP V
Sbjct: 288 PQFSFGYGPPPPPPDQFAPPGV 309


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 66.2 bits (160), Expect = 8e-12
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 18/123 (14%)

Query: 4   ADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAK 63
           AD +GK F+GGL+  T ++ L + F +YG++V+  +MKD  TN+SRGF F+ F+ P    
Sbjct: 6   ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP---- 61

Query: 64  DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRVLRGGRGGSGGTREP 122
                          +    A++P    GR   P P   RG  P   R   G   G R  
Sbjct: 62  -------------NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108

Query: 123 PSR 125
            S+
Sbjct: 109 NSK 111



 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 9   KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARD 68
           K F+GG+     +  L   F K+G + EV ++ D E  + RGF FITFE    + D A +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE-DEQSVDQAVN 172

Query: 69  MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTREPPSRGGH 128
           M+   + GK ++V++A     +S  + P  P  S+   RV+     G  G   P  + G+
Sbjct: 173 MHFHDIMGKKVEVKRAEPR--DSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGY 230



 Score = 26.6 bits (57), Expect = 7.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 87  PSFESGRRGPPPPPRSRGPPRV 108
           P F  G   PPPPP    PP V
Sbjct: 288 PQFSFGYGPPPPPPDQFAPPGV 309


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 63.5 bits (153), Expect = 5e-11
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 11/110 (10%)

Query: 12  IGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNG 71
           +  L   T+  +L  VF KYG++ +V++ ++  T   RGFAF+ F    DA+DA   M+G
Sbjct: 18  VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77

Query: 72  KSLDGKAIKVEQATKPSFESGRRGPPPPPRSR-GPPRVLRGGRGGSGGTR 120
             LDG+ ++V+ A        R G    PRSR G PR     RGG  G R
Sbjct: 78  AELDGRELRVQVA--------RYGRRDLPRSRQGEPR--GRSRGGGYGRR 117


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 8   GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
           GK FIGGL+ +T KK L+  F K+G++V+  L  D  T +SRGF F+ F + +++ D   
Sbjct: 78  GKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVM 136

Query: 68  D-----MNGKSLD---GKAIKVEQATKPSFESGRRGPPPPPRSR 103
           D     +NGK +D    KA+K ++  K  F  G     P  + R
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180



 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 9   KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAK 63
           K F+GGL+ +T ++ +   FG +G++  + L  D +TNK RGF FITF+     K
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVK 218


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 8   GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
           GK FIGGL+ +T KK L+  F K+G++V+  L  D  T +SRGF F+ F + +++ D   
Sbjct: 78  GKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVM 136

Query: 68  D-----MNGKSLD---GKAIKVEQATKPSFESGRRGPPPPPRSR 103
           D     +NGK +D    KA+K ++  K  F  G     P  + R
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180



 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 9   KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD-AAR 67
           K F+GGL+ +T ++ +   FG +G++  + L  D +TNK RGF FITF+     K    +
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223

Query: 68  DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG--SGGTREPPSR 125
             +   L    IKV  + +   +  + G      SRG       GRGG    G  +   R
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWG------SRGGFAGRARGRGGDQQSGYGKVSRR 277

Query: 126 GGHMDDW 132
           GGH + +
Sbjct: 278 GGHQNSY 284


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 11  FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
           +I     + + + L+ +FGK+G  + V +M D E+ KS+GF F++FER  DA+ A  +MN
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 71  GKSLDGKAIKVEQATK 86
           GK L+GK I V +A K
Sbjct: 253 GKELNGKQIYVGRAQK 268



 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 21/75 (28%), Positives = 42/75 (56%)

Query: 7  LGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAA 66
          +   ++G L+ +  +  L   F   G I+ + + +D  T +S G+A++ F++PADA+ A 
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69

Query: 67 RDMNGKSLDGKAIKV 81
            MN   + GK +++
Sbjct: 70 DTMNFDVIKGKPVRI 84



 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 7   LGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAA 66
           +G  FI  L+   + KAL   F  +G I+   ++  C+ N S+G+ F+ FE    A+ A 
Sbjct: 98  VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDENGSKGYGFVHFETQEAAERAI 155

Query: 67  RDMNGKSLDGKAIKV 81
             MNG  L+ + + V
Sbjct: 156 EKMNGMLLNDRKVFV 170



 Score = 38.9 bits (89), Expect = 0.001
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 11  FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
           ++  L+   + + L   F  +G I    +M   E  +S+GF F+ F  P +A  A  +MN
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 71  GKSLDGKAIKVEQATK 86
           G+ +  K + V  A +
Sbjct: 355 GRIVATKPLYVALAQR 370


>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
          Length = 296

 Score = 63.2 bits (152), Expect = 7e-11
 Identities = 33/86 (38%), Positives = 45/86 (52%)

Query: 11 FIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMN 70
          ++GGL  E + K L A F  +G I ++ +  D ET K RGFAF+ FE   DA  A  +MN
Sbjct: 9  YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68

Query: 71 GKSLDGKAIKVEQATKPSFESGRRGP 96
             L G+ I+V  A     + G   P
Sbjct: 69 ESELFGRTIRVNLAKPMRIKEGSSRP 94


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,118,355
Number of Sequences: 37866
Number of extensions: 428413
Number of successful extensions: 7017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 310
Number of HSP's that attempted gapping in prelim test: 4377
Number of HSP's gapped (non-prelim): 2612
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.