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Search of human proteins with 239746628
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo
sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo ... 468 e-132
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 36 0.031
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 33 0.15
gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens] 32 0.34
gi|239747700 PREDICTED: hypothetical protein XP_002348231 [Homo ... 32 0.45
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 32 0.58
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 32 0.58
gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens] 32 0.58
gi|5902108 SRY-box 21 [Homo sapiens] 31 0.76
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 31 0.99
gi|4758392 forkhead box D1 [Homo sapiens] 31 0.99
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ... 30 1.3
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 30 1.3
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 30 1.3
gi|27734911 DAZ interacting protein 1-like [Homo sapiens] 30 1.3
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 30 1.3
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 30 1.7
gi|239757105 PREDICTED: hypothetical protein [Homo sapiens] 30 1.7
gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo ... 30 1.7
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 30 1.7
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 30 1.7
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 30 1.7
gi|122937261 coiled-coil domain containing 85A [Homo sapiens] 30 1.7
gi|148762978 similar to CG15216-PA [Homo sapiens] 30 1.7
gi|169214011 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 30 2.2
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|148806902 TBC1 domain family, member 12 [Homo sapiens] 30 2.2
>gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo
sapiens]
Length = 227
Score = 468 bits (1203), Expect = e-132
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MSHHTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGL 60
MSHHTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGL
Sbjct: 1 MSHHTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGL 60
Query: 61 GVGQAEATSVRLGLHGLEAVFPYLGHDLQGPAVSHGDGLAGVGRELALLLGGPEQRGAKH 120
GVGQAEATSVRLGLHGLEAVFPYLGHDLQGPAVSHGDGLAGVGRELALLLGGPEQRGAKH
Sbjct: 61 GVGQAEATSVRLGLHGLEAVFPYLGHDLQGPAVSHGDGLAGVGRELALLLGGPEQRGAKH 120
Query: 121 RAKVVQGHLIDCLLLCHPVEDRSRGCCFNATTRREAEGLCRARVLREGVTSTLAVLQADS 180
RAKVVQGHLIDCLLLCHPVEDRSRGCCFNATTRREAEGLCRARVLREGVTSTLAVLQADS
Sbjct: 121 RAKVVQGHLIDCLLLCHPVEDRSRGCCFNATTRREAEGLCRARVLREGVTSTLAVLQADS 180
Query: 181 SLGVSSTRQTAAGGAARAAAHGQSCPRATPATTPSPGSPRQGRLSME 227
SLGVSSTRQTAAGGAARAAAHGQSCPRATPATTPSPGSPRQGRLSME
Sbjct: 181 SLGVSSTRQTAAGGAARAAAHGQSCPRATPATTPSPGSPRQGRLSME 227
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 35.8 bits (81), Expect = 0.031
Identities = 61/244 (25%), Positives = 84/244 (34%), Gaps = 46/244 (18%)
Query: 13 SPQQGAPAG-PGGGL--------GTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGL--- 60
SP+ GAP+G P G L +PY P +P P S QPPP G L
Sbjct: 988 SPKPGAPSGHPVGSLDGLLSPEASSPYPPLPPRPSASPSSSLQPPPPPPAPGELYRLPPA 1047
Query: 61 -------GVGQAEATSVRLGLHG--LEAVFPYLGHDLQGPAVSHGDGLAGVGRELALLLG 111
G G A + S G +G E F G A + +A + A +
Sbjct: 1048 SAVATAQGPGAASSLSSDTGDNGDYTEMAF--------GVAATPPQPIAAPPKPEAARVA 1099
Query: 112 GPEQRGAKHRAKVVQGHLIDCLLLCHPVEDRSRGCCFNATTRREAEGLCRARVLREGVTS 171
P G K + + Q ++ L D RG R + +G R R E +S
Sbjct: 1100 SPTS-GVKRLSLMEQVSGVEAFLQASQPPDPHRGA---KVIRADPQG-GRRRHSSETFSS 1154
Query: 172 TLAVLQADSSLGVS------------STRQTAAGGAARAAAHGQSCPRATPATTPSPGSP 219
T V S + S R+++ GG G P + P+P
Sbjct: 1155 TTTVTPVSPSFAHNPKRHNSASVENVSLRKSSEGGVGVGPGGGDEPPTSPRQLQPAPPLA 1214
Query: 220 RQGR 223
QGR
Sbjct: 1215 PQGR 1218
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 33.5 bits (75), Expect = 0.15
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 13 SPQQGAPAGPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGLGVGQAEATSVRL 72
+PQQGA +GPG P KP + + ++ PH GR G GQA A S
Sbjct: 972 TPQQGA-SGPGRS-PVGQARQPEKPSHLHLEKASSWPHRRDSGRPPGDSSGQAVAPSEGA 1029
Query: 73 GLH------GLE--AVFPYLGHDLQGPAVSHGDG 98
H GL ++ P D +GPAV G
Sbjct: 1030 NKHKGWSRQGLRRPSILPEGSSDSRGPAVEKHPG 1063
>gi|20162566 chromosome 7 open reading frame 11 [Homo sapiens]
Length = 179
Score = 32.3 bits (72), Expect = 0.34
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 19 PAGPGGGLGTPYHSHPCKPRQVPVSESQPPPH 50
P P G G+P+H+ P PR P S P H
Sbjct: 38 PPSPRDGYGSPHHTPPYGPRSRPYGSSHSPRH 69
>gi|239747700 PREDICTED: hypothetical protein XP_002348231 [Homo
sapiens]
Length = 137
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 14 PQQGAPAGPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRW 57
P GA AGPG P +P Q P P PH + W
Sbjct: 15 PATGASAGPGDAAAPQDSPSPARPSQFP--SDSPRPHVFSLAAW 56
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 31.6 bits (70), Expect = 0.58
Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 18/121 (14%)
Query: 111 GGPEQRGAKHRAKVVQGHLIDCLLLCHPVEDRSRGCCFNATTRREAEGL-CR--ARVLRE 167
GG E+RG +K DC +RG T RR G CR A R
Sbjct: 68 GGRERRGGLSHSK-------DC-----NAARNARGKHLRRTRRRRTLGRRCRPPAPRPRP 115
Query: 168 GVTSTLAVLQADSSLGVSSTRQTAAGGAA---RAAAHGQSCPRATPATTPSPGSPRQGRL 224
LA+ QA + + + R GG + Q PR TP+ P PG P + R
Sbjct: 116 RPRRKLALDQAATRIPAARPRPPGPGGRGSHWKIQPGVQRLPRPTPSAQPRPGPPERRRA 175
Query: 225 S 225
S
Sbjct: 176 S 176
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 31.6 bits (70), Expect = 0.58
Identities = 59/223 (26%), Positives = 75/223 (33%), Gaps = 34/223 (15%)
Query: 21 GPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRW------------AGLGVGQAEAT 68
GPG GT P PR P+ SQPPP T + AG G AE
Sbjct: 10 GPGAQEGTAEQRSPPPPRD-PMPSSQPPPPTPTLTPTPTPGQSPPLPDAAGASAGAAEDQ 68
Query: 69 SVRLGLHGLEAVFPYLGHDLQGPAVSHGDGLAGVGRELALL--------LGGPEQRGAKH 120
++ G + L GP G GR L L + G + ++
Sbjct: 69 ELQRWRQGASGI-----AGLAGPGGGSGAAAGAGGRALELAEARRRLLEVEGRRRLVSEL 123
Query: 121 RAKVVQGH---LIDCLLLCHPVEDRSR--GCCFNATTRREAEGLCRARVLREGVTSTLAV 175
++V+Q H L L L H E SR G A A G + R G
Sbjct: 124 ESRVLQLHRVFLAAELRLAHRAESLSRLSGGVAQAELYLAAHGSRLKKGPRRGRRGRPPA 183
Query: 176 LQADSSLGVSSTRQTAAGGAARAAAHGQSCP--RATPATTPSP 216
L A S+LG+ AG R P R+ P SP
Sbjct: 184 LLA-SALGLGGCVPWGAGRLRRGHGPEPDSPFRRSPPRGPASP 225
>gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]
Length = 200
Score = 31.6 bits (70), Expect = 0.58
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 106 LALL-LGGPEQRGAKHRAKVVQGHLIDCL-LLCHPVEDRSRGCCFNATTRREAEGLCRAR 163
LALL L GP+ A + HL++ L L+C RG + TRREAE L +
Sbjct: 11 LALLALWGPDPAAAFVNQHLCGSHLVEALYLVCG-----ERGFFYTPKTRREAEDLQASA 65
Query: 164 VLREGVTSTL-----AVLQADSSLGVSSTRQTAAGGAAR 197
+ TST A +A +L V++ A G ++R
Sbjct: 66 LSLSSSTSTWPEGLDATARAPPALVVTANIGQAGGSSSR 104
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 31.2 bits (69), Expect = 0.76
Identities = 36/136 (26%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 87 DLQGPAVSHGDGL---AGVGRELALLLGGPEQRGAKHRAKVVQGHLIDCLLLCHPVEDRS 143
D + PA+ G GL AG G LL PE+ A A + + P +
Sbjct: 105 DAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAAR--------VFFPQSAAA 156
Query: 144 RGCCFNATTRREAEGLCRARVLREGVTSTLAVLQADSSLGVSSTRQTAAGGAARAAAHGQ 203
A L ++S+ + L SSLG + A GAA AAA
Sbjct: 157 AAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAA 216
Query: 204 SCPRATPATTPSPGSP 219
+ + PSPG+P
Sbjct: 217 AAAGGHTHSHPSPGNP 232
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 30.8 bits (68), Expect = 0.99
Identities = 35/121 (28%), Positives = 42/121 (34%), Gaps = 6/121 (4%)
Query: 18 APAGPGGGLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGLGVGQAEATSVRLG---L 74
AP GPGG TP + P E+ P G G A R G
Sbjct: 112 APRGPGGPARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQPRAAVRPRRGGALP 171
Query: 75 HGLEAVFPYLGHDLQGPAVSHGDGLAGVGRELALLLGGPEQRGAKHRAKVVQGHLIDCLL 134
G AV P G + L G+G L GP RG + R + G +DC L
Sbjct: 172 RGTGAV-PERGPGTEPQRGRRCSDLQGLGGRLRGCPAGPSARGERQRHTITSG--VDCGL 228
Query: 135 L 135
L
Sbjct: 229 L 229
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 30.8 bits (68), Expect = 0.99
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 179 DSSLGVSSTRQTAAGGAARAAAHGQSCPRATP-ATTPSPGSPRQG 222
+S +G S AA AA+AAA Q+ P +P A P+PGS G
Sbjct: 365 ESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGG 409
>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 147 CFNATTRREAEGLCRA-----RVLREGVTSTLAVLQADSSLGVSSTRQTAAGGAARAAAH 201
CF A + AEG A R R G +T AV + + + R GG ARA
Sbjct: 63 CFTAFLK-VAEGAAAAAPRKPRTGRGGAAATAAVTRKERETAPARDRGGGDGGGARADGL 121
Query: 202 GQSCPRATPA------TTPS-PGSPRQ 221
PR PA + PS PGSP++
Sbjct: 122 RGRSPRRRPAGRAHARSLPSAPGSPKK 148
>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
sapiens]
Length = 165
Score = 30.4 bits (67), Expect = 1.3
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 147 CFNATTRREAEGLCRA-----RVLREGVTSTLAVLQADSSLGVSSTRQTAAGGAARAAAH 201
CF A + AEG A R R G +T AV + + + R GG ARA
Sbjct: 63 CFTAFLK-VAEGAAAAAPRKPRTGRGGAAATAAVTRKERETAPARDRGGGDGGGARADGL 121
Query: 202 GQSCPRATPA------TTPS-PGSPRQ 221
PR PA + PS PGSP++
Sbjct: 122 RGRSPRRRPAGRAHARSLPSAPGSPKK 148
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 2 SHHTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKPRQVPVSESQP-PPH 50
SHH + + P GA GPG +SHP P Q P+S P PPH
Sbjct: 1391 SHHPQMM-----PAAGAAGGPGSRPPGGSYSHPHHP-QSPLSPHSPIPPH 1434
>gi|55956904 mitogen-activated protein kinase kinase kinase 4 isoform
a [Homo sapiens]
Length = 1608
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 17 GAPAGPGGGLGTPYHSHPCKPRQVPVSESQPP-PHTM-----------------QVGRWA 58
G P P GL H + +P +VP S PP PH + G A
Sbjct: 1131 GKPHSPVTGLYLAIHRNSPRPMKVPRCHSDPPNPHLIIPTPEGFSTRSMPSDARSHGSPA 1190
Query: 59 GLGVGQAEATSV-RLGLHGLEAVFP---YLGHDLQGPAVSHGDGLAGVGREL 106
A A + R G ++V P HD +G +V D LA + EL
Sbjct: 1191 AAAAAAAAAVAASRPSPSGGDSVLPKSISSAHDTRGSSVPENDRLASIAAEL 1242
>gi|27734911 DAZ interacting protein 1-like [Homo sapiens]
Length = 767
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 40 VPVSESQPPPHTMQVGRWAGLGVGQAEATSVRLGLHGLEAVFPYLGHDLQGPAVSHGDGL 99
+P + ++PPP T Q G + Q A + GLHG + P G + P S +
Sbjct: 562 LPSTPAEPPPPTRQSHGSHGSSLTQVSAPAPHPGLHGPSSTPPSSGPGMSTPPFSSEEDS 621
Query: 100 AG 101
G
Sbjct: 622 EG 623
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 30.4 bits (67), Expect = 1.3
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 13 SPQQGA--PAGPGGGLGTPYHSHPCKPRQV--------PVSESQPPPHTMQVGRWAGLGV 62
+PQ GA P P GL S + QV P+ QPPP G+W G
Sbjct: 702 APQAGAHTPLTPQPGLAPQQQSPKQQQPQVQYYQHLLQPIGPQQPPPQPRAPGKWVH-GS 760
Query: 63 GQAEATSVRLGLHGL 77
Q A +V GL L
Sbjct: 761 SQQPAQAVGAGLSPL 775
>gi|238624188 diffuse panbronchiolitis critical region 1 protein
[Homo sapiens]
Length = 1393
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 195 AARAAAHGQSCPRATPATTPSPGSPRQGR 223
+A + HG+ P A TTPSP P + R
Sbjct: 417 SAESTEHGERTPLANENTTPSPAEPTENR 445
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 189 QTAAGGAARAAAHGQSCPRATPATTPSPGSPRQGR 223
+ +A HG+ P A TTPSP P + R
Sbjct: 510 EKTTSSSAEPTEHGERTPLANENTTPSPAEPTENR 544
>gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 25 GLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGLGVGQAEATSVR 71
GL TP PC P +S PP T+ R +G G A++ +R
Sbjct: 72 GLCTPSRPAPCAPEM----QSPRPPRTLHTFRPGSVGTGNAKSEPLR 114
>gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo
sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 25 GLGTPYHSHPCKPRQVPVSESQPPPHTMQVGRWAGLGVGQAEATSVR 71
GL TP PC P +S PP T+ R +G G A++ +R
Sbjct: 72 GLCTPSRPAPCAPEM----QSPRPPRTLHTFRPGSVGTGNAKSEPLR 114
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis
critical region 1 [Homo sapiens]
Length = 1400
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 195 AARAAAHGQSCPRATPATTPSPGSPRQGR 223
+A + HG+ P A TTPSP P + R
Sbjct: 479 SAESTEHGERTPLANENTTPSPAEPTENR 507
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 189 QTAAGGAARAAAHGQSCPRATPATTPSPGSPRQGR 223
+ +A HG+ P A TTPSP P + R
Sbjct: 572 EKTTSSSAEPTEHGERTPLANENTTPSPAEPTENR 606
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 10 VVLSPQQGAPAGPGGGL---------GTPYHSHPCKPRQVPVSESQPP 48
+ + PQ+ AP+GPGGG G P K +Q+ VS +Q P
Sbjct: 1037 ITIGPQRPAPSGPGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKP 1084
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 157 EGLCRARVLREGVTSTLAVLQADSSLGVSSTRQTAAGGAARAAAHGQSCPRATPATTPSP 216
E LC +L G+ A A LG+ T GG A + G++ A P PSP
Sbjct: 734 EALCSEALLAPGLFQGPAFEDALPGLGLYRTASLGTGGRA-SERSGEASGPAAPPELPSP 792
Query: 217 GS 218
G+
Sbjct: 793 GA 794
>gi|122937261 coiled-coil domain containing 85A [Homo sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 191 AAGGAARAAAHGQSCPRATPATTPSPGSP 219
AAGGAA AAA +SC A ++ +P +P
Sbjct: 4 AAGGAAAAAAAAESCSPAPAGSSAAPPAP 32
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 197 RAAAHGQSCPRATPATTPSPGS----PRQGR 223
R A +S PRA P TP+P S PR+GR
Sbjct: 88 RRRARSKSAPRAPPGLTPAPASPPVLPRRGR 118
>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 4 HTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKP 37
H R LG P++G GPG G TP + P P
Sbjct: 122 HRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPP 155
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 153 RREAEGLCRARVLREGVTSTLAVLQADSSLGV-----SSTRQTAAGGAARAAAHGQSCPR 207
R +A GLC +R + LA + S S T +T A G++ ++ +
Sbjct: 1459 REQASGLCYNYQIRVQCCTPLACSTSSSPAQTTPPTTSKTTETRASGSSAPSSTPGTVSL 1518
Query: 208 ATPATTPSPGS 218
+T TTP+PG+
Sbjct: 1519 STARTTPAPGT 1529
>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 4 HTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKP 37
H R LG P++G GPG G TP + P P
Sbjct: 122 HRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPP 155
>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 4 HTRTLGVVLSPQQGAPAGPGGGLGTPYHSHPCKP 37
H R LG P++G GPG G TP + P P
Sbjct: 122 HRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPP 155
>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
Length = 775
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 138 PVEDRSRGCCFNATTRREAEGLCRARVLREGVTSTLAVLQADSSLGVSSTRQTAAGGAAR 197
P+ED R CC A +E EG G S + + SS S R AGG
Sbjct: 194 PLEDPLRSCCLVAADAQEPEG--------AGSDSGDSPASSCSSSEDSEQRGVGAGGPEE 245
Query: 198 AAAHGQSCPRATPATTPSPG 217
A S R P G
Sbjct: 246 GAPPATSAERTNGGAEPRLG 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,597,245
Number of Sequences: 37866
Number of extensions: 532210
Number of successful extensions: 3631
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 3556
Number of HSP's gapped (non-prelim): 139
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.