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Search of human proteins with 239746530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
(536 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 1108 0.0
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 50 4e-06
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 50 7e-06
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 50 7e-06
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 50 7e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 50 7e-06
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 44 3e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 44 3e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 43 6e-04
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 43 6e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 43 6e-04
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 43 6e-04
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 42 0.001
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 42 0.001
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 0.001
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 42 0.001
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 41 0.002
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 41 0.002
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 41 0.002
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 41 0.003
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 41 0.003
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 41 0.003
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 1108 bits (2866), Expect = 0.0
Identities = 536/536 (100%), Positives = 536/536 (100%)
Query: 1 MTTASSMSPKPSKYFLSEASVVWYGRPPTKILVNVVSFCEPCMAPGAARGRGKPALGAHG 60
MTTASSMSPKPSKYFLSEASVVWYGRPPTKILVNVVSFCEPCMAPGAARGRGKPALGAHG
Sbjct: 1 MTTASSMSPKPSKYFLSEASVVWYGRPPTKILVNVVSFCEPCMAPGAARGRGKPALGAHG 60
Query: 61 AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP 120
AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP
Sbjct: 61 AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP 120
Query: 121 DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEP 180
DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEP
Sbjct: 121 DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEP 180
Query: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRG 240
RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRG
Sbjct: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRG 240
Query: 241 LCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQRRESEFTLMRMCREEQ 300
LCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQRRESEFTLMRMCREEQ
Sbjct: 241 LCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQRRESEFTLMRMCREEQ 300
Query: 301 ALRGLSFGLSLVQVACTPPACSPAPLNPWEPQVAIFICQVQSIVRCPRIFLMKREVALLY 360
ALRGLSFGLSLVQVACTPPACSPAPLNPWEPQVAIFICQVQSIVRCPRIFLMKREVALLY
Sbjct: 301 ALRGLSFGLSLVQVACTPPACSPAPLNPWEPQVAIFICQVQSIVRCPRIFLMKREVALLY 360
Query: 361 SVDRLAGEGKPAANPRAVSCTWRWGSESPSCELHVALGKAEFVSAVAVRVAQAGDPAPTS 420
SVDRLAGEGKPAANPRAVSCTWRWGSESPSCELHVALGKAEFVSAVAVRVAQAGDPAPTS
Sbjct: 361 SVDRLAGEGKPAANPRAVSCTWRWGSESPSCELHVALGKAEFVSAVAVRVAQAGDPAPTS 420
Query: 421 AATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLTAKPHRRGPQVGFESLKVTNTSLKVT 480
AATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLTAKPHRRGPQVGFESLKVTNTSLKVT
Sbjct: 421 AATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLTAKPHRRGPQVGFESLKVTNTSLKVT 480
Query: 481 CLPPPGICVSHITAGMMLWGTGVLRGPHTAGAKASVFHEETIADIKFETEKSGSHL 536
CLPPPGICVSHITAGMMLWGTGVLRGPHTAGAKASVFHEETIADIKFETEKSGSHL
Sbjct: 481 CLPPPGICVSHITAGMMLWGTGVLRGPHTAGAKASVFHEETIADIKFETEKSGSHL 536
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 50.4 bits (119), Expect = 4e-06
Identities = 79/265 (29%), Positives = 94/265 (35%), Gaps = 34/265 (12%)
Query: 42 CMAPGAARGR--GKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
C PG+ARGR G+P GA G G GG + R LR G A G+E +
Sbjct: 10 CPGPGSARGRFPGRPR-GAGGGG--GRGGRGNGAERVRVALRRGGGATGPGGAEPGEDTA 66
Query: 100 QAR--PLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTR 157
R LRR RR RR G R R R GRG P RG V +
Sbjct: 67 LLRLLGLRRGLRRLRR--------LWAGPRVQRGRGRGRGRGWGPSRGCVPEEESSDGES 118
Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQP 217
Q F + R R RG + G + +P PP A AP P + P
Sbjct: 119 DEEEFQGFHSDEDVAPSSLRSALRSQRGRAPRGRGRKHKTTPLP-PPRLADVAPTPPKTP 177
Query: 218 HKGVRPLGCCRG--------GRAQAAGQPRG-LCLP-----GRGRDRAVEAGDA----VA 259
+ G R RAQA PR C P RGR AG A
Sbjct: 178 ARKRGEEGTERMVQALTELLRRAQAPQAPRSRACEPSTPRRSRGRPPGRPAGPCRRKQQA 237
Query: 260 QVRVQSHSFAPRPRAPLAVAPAALQ 284
V ++ P+P P V P Q
Sbjct: 238 VVVAEAAVTIPKPEPPPPVVPVKHQ 262
Score = 33.9 bits (76), Expect = 0.38
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 19/127 (14%)
Query: 97 SSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRG------RRPLRGRVLLR 150
S ++ RP PS+RA R A R P+ G S P P G + L+
Sbjct: 466 SRKRGRPPLTPSQRAEREAARAGPE---GTSPPTPTPSTATGGPPEDSPTVAPKSTTFLK 522
Query: 151 QLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP---APPGPA 207
+ F P + + P R + P+ P +P L+ P +PP P
Sbjct: 523 NIRQFIMPVVSARSSRVIKTPRRFMDEDPPK-------PPKVEVSPVLRPPITTSPPVPQ 575
Query: 208 SPAPLPA 214
PAP+P+
Sbjct: 576 EPAPVPS 582
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 49.7 bits (117), Expect = 7e-06
Identities = 54/190 (28%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 43 MAPGAARGRGKPALGAHGAGCSSMGGAP----PPTDPGRAGLRSWGAAGSARGSEGRPSS 98
+ PG + LG A + G P P G R G RG +
Sbjct: 165 LGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGT 224
Query: 99 RQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGR----GRRPLRGRVLLRQLDP 154
A R P+R R + A RC +P R R R PLR L P
Sbjct: 225 GSAA--RGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSP 282
Query: 155 FTRPRFPLQFFQGCPQPSRCLGRLE---PRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
R R + + Q S R P R R GL+ AR PGL P P +PA
Sbjct: 283 SARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAA 342
Query: 212 L-PARQPHKG 220
L P PH G
Sbjct: 343 LRPGTSPHPG 352
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 49.7 bits (117), Expect = 7e-06
Identities = 54/190 (28%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 43 MAPGAARGRGKPALGAHGAGCSSMGGAP----PPTDPGRAGLRSWGAAGSARGSEGRPSS 98
+ PG + LG A + G P P G R G RG +
Sbjct: 165 LGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGT 224
Query: 99 RQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGR----GRRPLRGRVLLRQLDP 154
A R P+R R + A RC +P R R R PLR L P
Sbjct: 225 GSAA--RGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSP 282
Query: 155 FTRPRFPLQFFQGCPQPSRCLGRLE---PRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
R R + + Q S R P R R GL+ AR PGL P P +PA
Sbjct: 283 SARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAA 342
Query: 212 L-PARQPHKG 220
L P PH G
Sbjct: 343 LRPGTSPHPG 352
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 49.7 bits (117), Expect = 7e-06
Identities = 54/190 (28%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 43 MAPGAARGRGKPALGAHGAGCSSMGGAP----PPTDPGRAGLRSWGAAGSARGSEGRPSS 98
+ PG + LG A + G P P G R G RG +
Sbjct: 165 LGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGT 224
Query: 99 RQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGR----GRRPLRGRVLLRQLDP 154
A R P+R R + A RC +P R R R PLR L P
Sbjct: 225 GSAA--RGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSP 282
Query: 155 FTRPRFPLQFFQGCPQPSRCLGRLE---PRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
R R + + Q S R P R R GL+ AR PGL P P +PA
Sbjct: 283 SARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAA 342
Query: 212 L-PARQPHKG 220
L P PH G
Sbjct: 343 LRPGTSPHPG 352
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 49.7 bits (117), Expect = 7e-06
Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 12/188 (6%)
Query: 41 PCMAPGAARG--RGKPALGAHGAGCSSMGGAP--PPTDPGRAGLRSWGAAGSARGSEGRP 96
P +P A + + +PA + G S A PP +PG L + AA +E
Sbjct: 487 PAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAE 546
Query: 97 SSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPR-ALGRGRRPLRGRVLLRQLDPF 155
+ P R+A R ++ S+ R RPR + R GR+ L + P
Sbjct: 547 APPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPV 606
Query: 156 TRPRFPLQFFQGCPQPS------RCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASP 209
R L QG P+P R L P+ P G R + A PG P
Sbjct: 607 WRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREP 666
Query: 210 APLPARQP 217
P A++P
Sbjct: 667 CP-AAQEP 673
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 48.5 bits (114), Expect = 2e-05
Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 48/201 (23%)
Query: 86 AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGR--RPL 143
+G R EGRP++ R R R SA RP L RG+ +P
Sbjct: 6 SGEIRSEEGRPTTES---------RIRPRLAEALSQPTLRHSASALRPPRLSRGKDLKPR 56
Query: 144 RGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRW-RGHGLQPGGA--RAPGLQV 200
GR DP +GC RL RW R L P A APG +
Sbjct: 57 CGRGPAHSPDPG----------EGC----EAWRRLSADRWPRPASLSPRAALASAPGQK- 101
Query: 201 PAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQ 260
P PA A LP +P GVRP R G +QA G+P G C +G
Sbjct: 102 ---PQPARQAQLP--RPVSGVRPPPRGRVGLSQAPGRPLGACARAKG------------- 143
Query: 261 VRVQSHSFAPRPRAPLAVAPA 281
+R+ + S PRP P+ + A
Sbjct: 144 IRLVNPS-PPRPPEPIPASAA 163
Score = 39.3 bits (90), Expect = 0.009
Identities = 67/248 (27%), Positives = 84/248 (33%), Gaps = 40/248 (16%)
Query: 54 PALGAHGAGCSSMG---GAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRR 110
PA A +G ++ G A P GR GSA + P +Q + P
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKGR---------GSAERTNHIPKDKQR--VAAPPPP 207
Query: 111 ARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLD-----PFTRP------- 158
R R P C G S P A GR ++ R R L R P TRP
Sbjct: 208 ERPRVPFCRGSS--GLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSS 265
Query: 159 -RFPLQFFQG-----CPQPSRC-----LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPA 207
PL FF P+P+ LGRL P R G GG P + P P
Sbjct: 266 HSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPP 325
Query: 208 SPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHS 267
+P PA P R G A G P P R A E G +++
Sbjct: 326 APTAWPAAGAPGAPNPAE-SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEE 384
Query: 268 FAPRPRAP 275
R ++P
Sbjct: 385 TPGRRKSP 392
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 48.5 bits (114), Expect = 2e-05
Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 48/201 (23%)
Query: 86 AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGR--RPL 143
+G R EGRP++ R R R SA RP L RG+ +P
Sbjct: 6 SGEIRSEEGRPTTES---------RIRPRLAEALSQPTLRHSASALRPPRLSRGKDLKPR 56
Query: 144 RGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRW-RGHGLQPGGA--RAPGLQV 200
GR DP +GC RL RW R L P A APG +
Sbjct: 57 CGRGPAHSPDPG----------EGC----EAWRRLSADRWPRPASLSPRAALASAPGQK- 101
Query: 201 PAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQ 260
P PA A LP +P GVRP R G +QA G+P G C +G
Sbjct: 102 ---PQPARQAQLP--RPVSGVRPPPRGRVGLSQAPGRPLGACARAKG------------- 143
Query: 261 VRVQSHSFAPRPRAPLAVAPA 281
+R+ + S PRP P+ + A
Sbjct: 144 IRLVNPS-PPRPPEPIPASAA 163
Score = 39.3 bits (90), Expect = 0.009
Identities = 67/248 (27%), Positives = 84/248 (33%), Gaps = 40/248 (16%)
Query: 54 PALGAHGAGCSSMG---GAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRR 110
PA A +G ++ G A P GR GSA + P +Q + P
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKGR---------GSAERTNHIPKDKQR--VAAPPPP 207
Query: 111 ARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLD-----PFTRP------- 158
R R P C G S P A GR ++ R R L R P TRP
Sbjct: 208 ERPRVPFCRGSS--GLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSS 265
Query: 159 -RFPLQFFQG-----CPQPSRC-----LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPA 207
PL FF P+P+ LGRL P R G GG P + P P
Sbjct: 266 HSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPP 325
Query: 208 SPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHS 267
+P PA P R G A G P P R A E G +++
Sbjct: 326 APTAWPAAGAPGAPNPAE-SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEE 384
Query: 268 FAPRPRAP 275
R ++P
Sbjct: 385 TPGRRKSP 392
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 48.5 bits (114), Expect = 2e-05
Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 48/201 (23%)
Query: 86 AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGR--RPL 143
+G R EGRP++ R R R SA RP L RG+ +P
Sbjct: 6 SGEIRSEEGRPTTES---------RIRPRLAEALSQPTLRHSASALRPPRLSRGKDLKPR 56
Query: 144 RGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRW-RGHGLQPGGA--RAPGLQV 200
GR DP +GC RL RW R L P A APG +
Sbjct: 57 CGRGPAHSPDPG----------EGC----EAWRRLSADRWPRPASLSPRAALASAPGQK- 101
Query: 201 PAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQ 260
P PA A LP +P GVRP R G +QA G+P G C +G
Sbjct: 102 ---PQPARQAQLP--RPVSGVRPPPRGRVGLSQAPGRPLGACARAKG------------- 143
Query: 261 VRVQSHSFAPRPRAPLAVAPA 281
+R+ + S PRP P+ + A
Sbjct: 144 IRLVNPS-PPRPPEPIPASAA 163
Score = 39.3 bits (90), Expect = 0.009
Identities = 67/248 (27%), Positives = 84/248 (33%), Gaps = 40/248 (16%)
Query: 54 PALGAHGAGCSSMG---GAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRR 110
PA A +G ++ G A P GR GSA + P +Q + P
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKGR---------GSAERTNHIPKDKQR--VAAPPPP 207
Query: 111 ARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLD-----PFTRP------- 158
R R P C G S P A GR ++ R R L R P TRP
Sbjct: 208 ERPRVPFCRGSS--GLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSS 265
Query: 159 -RFPLQFFQG-----CPQPSRC-----LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPA 207
PL FF P+P+ LGRL P R G GG P + P P
Sbjct: 266 HSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPP 325
Query: 208 SPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHS 267
+P PA P R G A G P P R A E G +++
Sbjct: 326 APTAWPAAGAPGAPNPAE-SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEE 384
Query: 268 FAPRPRAP 275
R ++P
Sbjct: 385 TPGRRKSP 392
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/289 (27%), Positives = 107/289 (37%), Gaps = 64/289 (22%)
Query: 64 SSMGGAP---PPTDPGRAGLRSWGAAGSAR--GSEGRPSSRQARPLRRPSRRARRRAPRC 118
++ GG P P R GLR+ GS G+E RPSSR++ R R RRR +
Sbjct: 61 ANRGGGPVGAPRVSRRREGLRALKVPGSEPQVGAEVRPSSRKSLSDHRGLGRGRRRRRQ- 119
Query: 119 APDRRCGDSAP----RHRPRALGRGRRPL--RGRVLLRQLDPFTRPRFPLQFFQGCPQPS 172
RR G AP R +P + + PL R LL + R +G +
Sbjct: 120 --RRRWGTQAPCGRLRAKPALQTQRKEPLVFTQRSLLHSSPRWFSSRHS-SISEG--EGD 174
Query: 173 RCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRA 232
RC G EP PGG+ P +P PP P SP AR+ P G +
Sbjct: 175 RC-GFAEP---------PGGSSPPAPPLPPPPKPGSPTQ-RAREASSWKPP------GHS 217
Query: 233 QAAGQPRGLCLPGRGR---DRAVEAGDAVAQVRVQSHSFAPRPRAPLAVA--PAALQRRE 287
A RG P R + + E + + + + +P R P PAAL
Sbjct: 218 HTAPPGRGTQRPLTQRHSSESSSELSSSAWPGTIWTSTLSPGQRLPTPPPPDPAAL---- 273
Query: 288 SEFTLMRMCREEQALRGLSFGLSLVQVACTPPACSPA----PLNPWEPQ 332
S+GL Q AC P + A + PWE Q
Sbjct: 274 -----------------TSWGLPQQQGACVPEGIALALRCRAMGPWEEQ 305
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 3e-04
Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 61/252 (24%)
Query: 51 RGKPALGAHGAGCSSMGGAPPP--------TDPGRAGLRSWGAAGSARGSE---GRPS-- 97
R +PA GCSS +P P T PGRA G +GS+ RPS
Sbjct: 118 RLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRA 177
Query: 98 ----------------SRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
R ARP RRP + R R CG G G
Sbjct: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG---------TWGSGGG 228
Query: 142 PLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP 201
P D + P+ F G + C GR RR G G QPG L P
Sbjct: 229 PGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGR---RRSNGQGTQPGCR----LLSP 281
Query: 202 APPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQV 261
APP R+ ++ +PL GG + P + P R R+V A
Sbjct: 282 APP----------RRRYR--KPLTLSFGGGVSSPTHP--VVAPRRHFPRSVPR--FPAGF 325
Query: 262 RVQSHSFAPRPR 273
R S AP+P+
Sbjct: 326 RTHSLGTAPKPK 337
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 3e-04
Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 61/252 (24%)
Query: 51 RGKPALGAHGAGCSSMGGAPPP--------TDPGRAGLRSWGAAGSARGSE---GRPS-- 97
R +PA GCSS +P P T PGRA G +GS+ RPS
Sbjct: 118 RLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRA 177
Query: 98 ----------------SRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
R ARP RRP + R R CG G G
Sbjct: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG---------TWGSGGG 228
Query: 142 PLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP 201
P D + P+ F G + C GR RR G G QPG L P
Sbjct: 229 PGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGR---RRSNGQGTQPGCR----LLSP 281
Query: 202 APPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQV 261
APP R+ ++ +PL GG + P + P R R+V A
Sbjct: 282 APP----------RRRYR--KPLTLSFGGGVSSPTHP--VVAPRRHFPRSVPR--FPAGF 325
Query: 262 RVQSHSFAPRPR 273
R S AP+P+
Sbjct: 326 RTHSLGTAPKPK 337
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 44.3 bits (103), Expect = 3e-04
Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 61/252 (24%)
Query: 51 RGKPALGAHGAGCSSMGGAPPP--------TDPGRAGLRSWGAAGSARGSE---GRPS-- 97
R +PA GCSS +P P T PGRA G +GS+ RPS
Sbjct: 118 RLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRA 177
Query: 98 ----------------SRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
R ARP RRP + R R CG G G
Sbjct: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG---------TWGSGGG 228
Query: 142 PLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP 201
P D + P+ F G + C GR RR G G QPG L P
Sbjct: 229 PGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGR---RRSNGQGTQPGCR----LLSP 281
Query: 202 APPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQV 261
APP R+ ++ +PL GG + P + P R R+V A
Sbjct: 282 APP----------RRRYR--KPLTLSFGGGVSSPTHP--VVAPRRHFPRSVPR--FPAGF 325
Query: 262 RVQSHSFAPRPR 273
R S AP+P+
Sbjct: 326 RTHSLGTAPKPK 337
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 43.1 bits (100), Expect = 6e-04
Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 41 PCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSARGSEGRPSSR 99
P M+ G A G PA A G + G +PPP + GRAG RS G AG+A GS +S
Sbjct: 96 PVMSHGEA---GTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151
Query: 100 QARPLRRPSRRARRR---APRCAP---DRRCGDSAP-RHRPRALGRGRR 141
P RR R AR R P P ++ S P RP L G+R
Sbjct: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 43.1 bits (100), Expect = 6e-04
Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 41 PCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSARGSEGRPSSR 99
P M+ G A G PA A G + G +PPP + GRAG RS G AG+A GS +S
Sbjct: 96 PVMSHGEA---GTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151
Query: 100 QARPLRRPSRRARRR---APRCAP---DRRCGDSAP-RHRPRALGRGRR 141
P RR R AR R P P ++ S P RP L G+R
Sbjct: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 43.1 bits (100), Expect = 6e-04
Identities = 64/239 (26%), Positives = 89/239 (37%), Gaps = 24/239 (10%)
Query: 48 ARGRGK--PALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLR 105
ARG+ P A AG P P P A R AAG+ G RP+ ARP
Sbjct: 134 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP-RPAP-SARP-- 189
Query: 106 RPSRRARRRAPRCAPDRRCGDSAP--RHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQ 163
RP R++ A + + +P R RP A G +RP R L P + P
Sbjct: 190 RPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP-ASRSLSSSATPLSSPARSGP 248
Query: 164 FFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRP 223
+G P+ + +P+ + L+P P GP S +PL P P
Sbjct: 249 SARGTPRAPAHPSQPKPKGLQ--ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSP 306
Query: 224 LGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQ-SHSFAPR-PRAPLAVAP 280
+ P LP +A ++ +Q +HSF P P +PLA P
Sbjct: 307 -----------SAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPP 354
Score = 32.0 bits (71), Expect = 1.5
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 185 GHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCC----RGGRAQAAGQPRG 240
G + ARAPGL P PPG SP P P P +R LG R A+ AG G
Sbjct: 11 GAAARTPAARAPGLLTPRPPG--SPRPPPPVTP-AALRVLGAAGAVGRKPLAERAGGIGG 67
Query: 241 LCLP 244
+P
Sbjct: 68 ATIP 71
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 43.1 bits (100), Expect = 6e-04
Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 41 PCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSARGSEGRPSSR 99
P M+ G A G PA A G + G +PPP + GRAG RS G AG+A GS +S
Sbjct: 96 PVMSHGEA---GTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151
Query: 100 QARPLRRPSRRARRR---APRCAP---DRRCGDSAP-RHRPRALGRGRR 141
P RR R AR R P P ++ S P RP L G+R
Sbjct: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 42.0 bits (97), Expect = 0.001
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 78 AGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP--DRRCGDSAPRHRPRA 135
+ LR+ + G + G + P R+ RP R + R+PRC P R+ G R A
Sbjct: 243 SALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARGAA 302
Query: 136 LGRGRRPLRGRVLLRQ 151
LG R L GR LLR+
Sbjct: 303 LGGAFRVLAGRALLRR 318
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 42.0 bits (97), Expect = 0.001
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 78 AGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP--DRRCGDSAPRHRPRA 135
+ LR+ + G + G + P R+ RP R + R+PRC P R+ G R A
Sbjct: 243 SALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARGAA 302
Query: 136 LGRGRRPLRGRVLLRQ 151
LG R L GR LLR+
Sbjct: 303 LGGAFRVLAGRALLRR 318
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 42.0 bits (97), Expect = 0.001
Identities = 70/249 (28%), Positives = 87/249 (34%), Gaps = 61/249 (24%)
Query: 45 PGAARGR-GKPALGAHGAGCSSMGGAPPPTDPG------RAGLRSWGAAGSARGSEGRPS 97
PG+A KP+ + + AP P G R+ S G G A G GR
Sbjct: 328 PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRR 387
Query: 98 SRQARPLRRPS-----RRARRRAPRCAPDRRCGDSAPRHRPRA-LGRGRRPLRGRVLLRQ 151
R+ R R S RR RR PR AP R S R R + G GR
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGR----------- 436
Query: 152 LDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
G P P EP RGHG G RA + P PAS +P
Sbjct: 437 ---------------GAPGPGP-----EPGSERGHG--GHGKRAK--ERPPRARPASTSP 472
Query: 212 LPARQPHKGVRPLGCCRGGRAQAAGQPRGLC---LPGRGRDRAVEAGDAVAQVRVQSHSF 268
P +G P G + PR P + R R+ A+ R S S
Sbjct: 473 SPGAHGRRG-GPEG--KSSSRSPGPHPRSWSSSRSPSKSRSRS-------AEKRPHSPSR 522
Query: 269 APRPRAPLA 277
+P P+ PL+
Sbjct: 523 SPSPKKPLS 531
Score = 32.0 bits (71), Expect = 1.5
Identities = 44/167 (26%), Positives = 58/167 (34%), Gaps = 16/167 (9%)
Query: 108 SRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
SRR RR R + +R + + RP GRR R P +
Sbjct: 218 SRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHR-----HSSGSSHSPSLSSHY--- 269
Query: 168 CPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCC 227
SR RL P+ R G + G R+ G + P+P G S P R G R
Sbjct: 270 --SDSRSPSRLSPKH-RDEGRKTGSQRSSGSRSPSPSG-GSGWGSPQRNGGSGQR--SGA 323
Query: 228 RGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRA 274
GGR +A P P R + A A +P PR+
Sbjct: 324 HGGRPGSAHSPPD--KPSSPSPRVRDKAAAAAPTPPARGKESPSPRS 368
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 0.001
Identities = 62/220 (28%), Positives = 79/220 (35%), Gaps = 23/220 (10%)
Query: 42 CMAPGAARG-RGKPAL-GAHG-AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSS 98
C P A +G G+P L G+ G AG S +G PP PG G + G G P
Sbjct: 117 CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 176
Query: 99 RQARPLRRP-----SRRARRRAPRCA--PDRRCGDSAPR--HRPRALGRGRRPLRGRVLL 149
+ L P + + +C P R C S P + + PL V L
Sbjct: 177 KGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRL 236
Query: 150 RQLDPFTRPRFPLQ----FFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG 205
R F + QG P P G P GH PG PGL P PPG
Sbjct: 237 APPPVIKRRTFQGEQSQASIQGPPGPP---GPPGPSGPLGHPGLPGPMGPPGL--PGPPG 291
Query: 206 PASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPG 245
P + KG R + G+ A G P G+ + G
Sbjct: 292 PKGDPGIQGYHGRKGERGMP-GMPGKHGAKGAP-GIAVAG 329
>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 37 SFCEPCMAPGA-ARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGR 95
S E A GA R G+ G G G S G P+ PG G G A S G GR
Sbjct: 50 SRAESSAARGARVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGGGAASQPGLCGR 109
Query: 96 PSSRQARPLRRP--------SRRARRRAPRCA 119
+ + R RP +RR R RAPR A
Sbjct: 110 AGTGEKRKWERPGKETWKPKTRRPRLRAPRAA 141
Score = 31.2 bits (69), Expect = 2.5
Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 43/185 (23%)
Query: 62 GCSSMG------GAPPPTDPGRAGLRSWGAAGSARGSEG----RPSSRQARPLRRPSRRA 111
GC +G GA P P RA R GA+ + G G R +R +R A
Sbjct: 2 GCEVVGFFPAQHGARPSEKPPRAAQRQ-GASRAGTGGSGVLTPRAKGSTSRAESSAARGA 60
Query: 112 RRRAP----RCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
R RAP R P R +A P G G R G
Sbjct: 61 RVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGG--------------------GA 100
Query: 168 CPQPSRC--LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
QP C G E R+W G + P + P P + LP + H P G
Sbjct: 101 ASQPGLCGRAGTGEKRKWERPGKE---TWKPKTRRPRLRAPRAALLLPRPRTH---GPAG 154
Query: 226 CCRGG 230
RGG
Sbjct: 155 GTRGG 159
Score = 29.3 bits (64), Expect = 9.5
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 180 PRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPR 239
PR + G G G+ P G S A A + + P CRGG +
Sbjct: 22 PRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRTCRGGPGRGYESAA 81
Query: 240 GLCLP----GRGRDRAVEA------------GDAVAQVRVQSHSFAPRPRAPLAVAPAA 282
G LP G GRD A G+ R ++ P+ R P AP A
Sbjct: 82 GNSLPSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRA 140
>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 37 SFCEPCMAPGA-ARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGR 95
S E A GA R G+ G G G S G P+ PG G G A S G GR
Sbjct: 50 SRAESSAARGARVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGGGAASQPGLCGR 109
Query: 96 PSSRQARPLRRP--------SRRARRRAPRCA 119
+ + R RP +RR R RAPR A
Sbjct: 110 AGTGEKRKWERPGKETWKPKTRRPRLRAPRAA 141
Score = 31.2 bits (69), Expect = 2.5
Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 43/185 (23%)
Query: 62 GCSSMG------GAPPPTDPGRAGLRSWGAAGSARGSEG----RPSSRQARPLRRPSRRA 111
GC +G GA P P RA R GA+ + G G R +R +R A
Sbjct: 2 GCEVVGFFPAQHGARPSEKPPRAAQRQ-GASRAGTGGSGVLTPRAKGSTSRAESSAARGA 60
Query: 112 RRRAP----RCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
R RAP R P R +A P G G R G
Sbjct: 61 RVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGG--------------------GA 100
Query: 168 CPQPSRC--LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
QP C G E R+W G + P + P P + LP + H P G
Sbjct: 101 ASQPGLCGRAGTGEKRKWERPGKE---TWKPKTRRPRLRAPRAALLLPRPRTH---GPAG 154
Query: 226 CCRGG 230
RGG
Sbjct: 155 GTRGG 159
Score = 29.3 bits (64), Expect = 9.5
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 180 PRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPR 239
PR + G G G+ P G S A A + + P CRGG +
Sbjct: 22 PRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRTCRGGPGRGYESAA 81
Query: 240 GLCLP----GRGRDRAVEA------------GDAVAQVRVQSHSFAPRPRAPLAVAPAA 282
G LP G GRD A G+ R ++ P+ R P AP A
Sbjct: 82 GNSLPSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRA 140
>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 37 SFCEPCMAPGA-ARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGR 95
S E A GA R G+ G G G S G P+ PG G G A S G GR
Sbjct: 50 SRAESSAARGARVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGGGAASQPGLCGR 109
Query: 96 PSSRQARPLRRP--------SRRARRRAPRCA 119
+ + R RP +RR R RAPR A
Sbjct: 110 AGTGEKRKWERPGKETWKPKTRRPRLRAPRAA 141
Score = 31.2 bits (69), Expect = 2.5
Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 43/185 (23%)
Query: 62 GCSSMG------GAPPPTDPGRAGLRSWGAAGSARGSEG----RPSSRQARPLRRPSRRA 111
GC +G GA P P RA R GA+ + G G R +R +R A
Sbjct: 2 GCEVVGFFPAQHGARPSEKPPRAAQRQ-GASRAGTGGSGVLTPRAKGSTSRAESSAARGA 60
Query: 112 RRRAP----RCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
R RAP R P R +A P G G R G
Sbjct: 61 RVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGG--------------------GA 100
Query: 168 CPQPSRC--LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
QP C G E R+W G + P + P P + LP + H P G
Sbjct: 101 ASQPGLCGRAGTGEKRKWERPGKE---TWKPKTRRPRLRAPRAALLLPRPRTH---GPAG 154
Query: 226 CCRGG 230
RGG
Sbjct: 155 GTRGG 159
Score = 29.3 bits (64), Expect = 9.5
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 180 PRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPR 239
PR + G G G+ P G S A A + + P CRGG +
Sbjct: 22 PRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRTCRGGPGRGYESAA 81
Query: 240 GLCLP----GRGRDRAVEA------------GDAVAQVRVQSHSFAPRPRAPLAVAPAA 282
G LP G GRD A G+ R ++ P+ R P AP A
Sbjct: 82 GNSLPSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRA 140
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/235 (26%), Positives = 78/235 (33%), Gaps = 23/235 (9%)
Query: 45 PGAARGRGKPALGAHGA----GCSSMGGAP-PPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
PG+ G P +G G G + G P P PGR GL G +G P
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA 754
Query: 100 QARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRP-LRGRVLLR-QLDPFTR 157
P P + A DR G P P G P +G V Q P
Sbjct: 755 LPGPPGPPGLPGFKGALGPKGDR--GFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812
Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG-------PASPA 210
P P QG P P G + G + G PGL VP PPG P +P
Sbjct: 813 PGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPG 872
Query: 211 PL-----PARQPHKGVRPLGCCRG--GRAQAAGQPRGLCLPGRGRDRAVEAGDAV 258
P+ P G +G G G P L +PGR ++ D +
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Score = 34.3 bits (77), Expect = 0.29
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 67 GGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRP 107
G PP DPGR GL + AG +G G P R L P
Sbjct: 1406 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/235 (26%), Positives = 78/235 (33%), Gaps = 23/235 (9%)
Query: 45 PGAARGRGKPALGAHGA----GCSSMGGAP-PPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
PG+ G P +G G G + G P P PGR GL G +G P
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA 754
Query: 100 QARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRP-LRGRVLLR-QLDPFTR 157
P P + A DR G P P G P +G V Q P
Sbjct: 755 LPGPPGPPGLPGFKGALGPKGDR--GFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812
Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG-------PASPA 210
P P QG P P G + G + G PGL VP PPG P +P
Sbjct: 813 PGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPG 872
Query: 211 PL-----PARQPHKGVRPLGCCRG--GRAQAAGQPRGLCLPGRGRDRAVEAGDAV 258
P+ P G +G G G P L +PGR ++ D +
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Score = 34.3 bits (77), Expect = 0.29
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 67 GGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRP 107
G PP DPGR GL + AG +G G P R L P
Sbjct: 1400 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1440
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/235 (26%), Positives = 78/235 (33%), Gaps = 23/235 (9%)
Query: 45 PGAARGRGKPALGAHGA----GCSSMGGAP-PPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
PG+ G P +G G G + G P P PGR GL G +G P
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA 754
Query: 100 QARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRP-LRGRVLLR-QLDPFTR 157
P P + A DR G P P G P +G V Q P
Sbjct: 755 LPGPPGPPGLPGFKGALGPKGDR--GFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812
Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG-------PASPA 210
P P QG P P G + G + G PGL VP PPG P +P
Sbjct: 813 PGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPG 872
Query: 211 PL-----PARQPHKGVRPLGCCRG--GRAQAAGQPRGLCLPGRGRDRAVEAGDAV 258
P+ P G +G G G P L +PGR ++ D +
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927
Score = 34.3 bits (77), Expect = 0.29
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 67 GGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRP 107
G PP DPGR GL + AG +G G P R L P
Sbjct: 1403 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 69 APPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRA---RRRAPRCAPDRRCG 125
APP PG A R G GS P+ +ARPL P R A RRR D R G
Sbjct: 85 APPRPVPGAARWR--GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVG 142
Query: 126 DSAPRHRPRALGR 138
D RP A GR
Sbjct: 143 DGERELRPDARGR 155
Score = 30.0 bits (66), Expect = 5.5
Identities = 32/95 (33%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 136 LGRGRRPLRGRVLLRQLDPFTRPR-------FPLQFF--------QGCPQPSRCLGRLEP 180
LG G P RGR+ L RP PL+ P+P C R P
Sbjct: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCR-RAPP 87
Query: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPAR 215
R PG AR G P P PA PAP AR
Sbjct: 88 RP------VPGAARWRGRPEPRPGSPAGPAPTRAR 116
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 69 APPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRA---RRRAPRCAPDRRCG 125
APP PG A R G GS P+ +ARPL P R A RRR D R G
Sbjct: 85 APPRPVPGAARWR--GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVG 142
Query: 126 DSAPRHRPRALGR 138
D RP A GR
Sbjct: 143 DGERELRPDARGR 155
Score = 30.0 bits (66), Expect = 5.5
Identities = 32/95 (33%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 136 LGRGRRPLRGRVLLRQLDPFTRPR-------FPLQFF--------QGCPQPSRCLGRLEP 180
LG G P RGR+ L RP PL+ P+P C R P
Sbjct: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCR-RAPP 87
Query: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPAR 215
R PG AR G P P PA PAP AR
Sbjct: 88 RP------VPGAARWRGRPEPRPGSPAGPAPTRAR 116
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 40.8 bits (94), Expect = 0.003
Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 40 EPCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL---RSWGAAGSARGSEGRP 96
EP ARG A A G C +G AP PT PGR G +WG A G G P
Sbjct: 5 EPACTMDQARGLDDAA--ARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPGHP 62
Query: 97 SSRQA 101
S A
Sbjct: 63 SGHWA 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,608,543
Number of Sequences: 37866
Number of extensions: 1653376
Number of successful extensions: 14441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 909
Number of HSP's that attempted gapping in prelim test: 11365
Number of HSP's gapped (non-prelim): 3347
length of query: 536
length of database: 18,247,518
effective HSP length: 107
effective length of query: 429
effective length of database: 14,195,856
effective search space: 6090022224
effective search space used: 6090022224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.