Guide to the Human Genome
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Search of human proteins with 239746530

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
         (536 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ...  1108   0.0  
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    50   4e-06
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ...    50   7e-06
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ...    50   7e-06
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ...    50   7e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens]             50   7e-06
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]            49   2e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]            49   2e-05
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]             49   2e-05
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-04
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    44   3e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    44   3e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            44   3e-04
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ...    43   6e-04
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ...    43   6e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    43   6e-04
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ...    43   6e-04
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ...    42   0.001
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ...    42   0.001
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             42   0.001
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]        42   0.001
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]            42   0.002
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]            42   0.002
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]            42   0.002
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    41   0.002
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    41   0.002
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    41   0.002
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ...    41   0.003
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ...    41   0.003
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]          41   0.003

>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
           sapiens]
          Length = 536

 Score = 1108 bits (2866), Expect = 0.0
 Identities = 536/536 (100%), Positives = 536/536 (100%)

Query: 1   MTTASSMSPKPSKYFLSEASVVWYGRPPTKILVNVVSFCEPCMAPGAARGRGKPALGAHG 60
           MTTASSMSPKPSKYFLSEASVVWYGRPPTKILVNVVSFCEPCMAPGAARGRGKPALGAHG
Sbjct: 1   MTTASSMSPKPSKYFLSEASVVWYGRPPTKILVNVVSFCEPCMAPGAARGRGKPALGAHG 60

Query: 61  AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP 120
           AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP
Sbjct: 61  AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP 120

Query: 121 DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEP 180
           DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEP
Sbjct: 121 DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEP 180

Query: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRG 240
           RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRG
Sbjct: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRG 240

Query: 241 LCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQRRESEFTLMRMCREEQ 300
           LCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQRRESEFTLMRMCREEQ
Sbjct: 241 LCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQRRESEFTLMRMCREEQ 300

Query: 301 ALRGLSFGLSLVQVACTPPACSPAPLNPWEPQVAIFICQVQSIVRCPRIFLMKREVALLY 360
           ALRGLSFGLSLVQVACTPPACSPAPLNPWEPQVAIFICQVQSIVRCPRIFLMKREVALLY
Sbjct: 301 ALRGLSFGLSLVQVACTPPACSPAPLNPWEPQVAIFICQVQSIVRCPRIFLMKREVALLY 360

Query: 361 SVDRLAGEGKPAANPRAVSCTWRWGSESPSCELHVALGKAEFVSAVAVRVAQAGDPAPTS 420
           SVDRLAGEGKPAANPRAVSCTWRWGSESPSCELHVALGKAEFVSAVAVRVAQAGDPAPTS
Sbjct: 361 SVDRLAGEGKPAANPRAVSCTWRWGSESPSCELHVALGKAEFVSAVAVRVAQAGDPAPTS 420

Query: 421 AATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLTAKPHRRGPQVGFESLKVTNTSLKVT 480
           AATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLTAKPHRRGPQVGFESLKVTNTSLKVT
Sbjct: 421 AATRRSTLPALGARQPSGAKQNHAWAFHTSQGTLTAKPHRRGPQVGFESLKVTNTSLKVT 480

Query: 481 CLPPPGICVSHITAGMMLWGTGVLRGPHTAGAKASVFHEETIADIKFETEKSGSHL 536
           CLPPPGICVSHITAGMMLWGTGVLRGPHTAGAKASVFHEETIADIKFETEKSGSHL
Sbjct: 481 CLPPPGICVSHITAGMMLWGTGVLRGPHTAGAKASVFHEETIADIKFETEKSGSHL 536


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 79/265 (29%), Positives = 94/265 (35%), Gaps = 34/265 (12%)

Query: 42  CMAPGAARGR--GKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
           C  PG+ARGR  G+P  GA G G    GG     +  R  LR  G A    G+E    + 
Sbjct: 10  CPGPGSARGRFPGRPR-GAGGGG--GRGGRGNGAERVRVALRRGGGATGPGGAEPGEDTA 66

Query: 100 QAR--PLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTR 157
             R   LRR  RR RR           G    R R R  GRG  P RG V   +      
Sbjct: 67  LLRLLGLRRGLRRLRR--------LWAGPRVQRGRGRGRGRGWGPSRGCVPEEESSDGES 118

Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQP 217
                Q F      +    R   R  RG   +  G +     +P PP  A  AP P + P
Sbjct: 119 DEEEFQGFHSDEDVAPSSLRSALRSQRGRAPRGRGRKHKTTPLP-PPRLADVAPTPPKTP 177

Query: 218 HKGVRPLGCCRG--------GRAQAAGQPRG-LCLP-----GRGRDRAVEAGDA----VA 259
            +     G  R          RAQA   PR   C P      RGR     AG       A
Sbjct: 178 ARKRGEEGTERMVQALTELLRRAQAPQAPRSRACEPSTPRRSRGRPPGRPAGPCRRKQQA 237

Query: 260 QVRVQSHSFAPRPRAPLAVAPAALQ 284
            V  ++    P+P  P  V P   Q
Sbjct: 238 VVVAEAAVTIPKPEPPPPVVPVKHQ 262



 Score = 33.9 bits (76), Expect = 0.38
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 19/127 (14%)

Query: 97  SSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRG------RRPLRGRVLLR 150
           S ++ RP   PS+RA R A R  P+   G S P   P     G          +    L+
Sbjct: 466 SRKRGRPPLTPSQRAEREAARAGPE---GTSPPTPTPSTATGGPPEDSPTVAPKSTTFLK 522

Query: 151 QLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP---APPGPA 207
            +  F  P    +  +    P R +    P+        P    +P L+ P   +PP P 
Sbjct: 523 NIRQFIMPVVSARSSRVIKTPRRFMDEDPPK-------PPKVEVSPVLRPPITTSPPVPQ 575

Query: 208 SPAPLPA 214
            PAP+P+
Sbjct: 576 EPAPVPS 582


>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
           sapiens]
          Length = 355

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 54/190 (28%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 43  MAPGAARGRGKPALGAHGAGCSSMGGAP----PPTDPGRAGLRSWGAAGSARGSEGRPSS 98
           + PG      +  LG   A   +  G      P   P   G R  G     RG      +
Sbjct: 165 LGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGT 224

Query: 99  RQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGR----GRRPLRGRVLLRQLDP 154
             A   R P+R  R  +   A   RC   +P  R R         R PLR       L P
Sbjct: 225 GSAA--RGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSP 282

Query: 155 FTRPRFPLQFFQGCPQPSRCLGRLE---PRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
             R R  + + Q     S    R     P R R  GL+   AR PGL     P P +PA 
Sbjct: 283 SARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAA 342

Query: 212 L-PARQPHKG 220
           L P   PH G
Sbjct: 343 LRPGTSPHPG 352


>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
           sapiens]
          Length = 355

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 54/190 (28%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 43  MAPGAARGRGKPALGAHGAGCSSMGGAP----PPTDPGRAGLRSWGAAGSARGSEGRPSS 98
           + PG      +  LG   A   +  G      P   P   G R  G     RG      +
Sbjct: 165 LGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGT 224

Query: 99  RQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGR----GRRPLRGRVLLRQLDP 154
             A   R P+R  R  +   A   RC   +P  R R         R PLR       L P
Sbjct: 225 GSAA--RGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSP 282

Query: 155 FTRPRFPLQFFQGCPQPSRCLGRLE---PRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
             R R  + + Q     S    R     P R R  GL+   AR PGL     P P +PA 
Sbjct: 283 SARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAA 342

Query: 212 L-PARQPHKG 220
           L P   PH G
Sbjct: 343 LRPGTSPHPG 352


>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
           sapiens]
          Length = 355

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 54/190 (28%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 43  MAPGAARGRGKPALGAHGAGCSSMGGAP----PPTDPGRAGLRSWGAAGSARGSEGRPSS 98
           + PG      +  LG   A   +  G      P   P   G R  G     RG      +
Sbjct: 165 LGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGT 224

Query: 99  RQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGR----GRRPLRGRVLLRQLDP 154
             A   R P+R  R  +   A   RC   +P  R R         R PLR       L P
Sbjct: 225 GSAA--RGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSP 282

Query: 155 FTRPRFPLQFFQGCPQPSRCLGRLE---PRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
             R R  + + Q     S    R     P R R  GL+   AR PGL     P P +PA 
Sbjct: 283 SARRRCRVNWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTPAA 342

Query: 212 L-PARQPHKG 220
           L P   PH G
Sbjct: 343 LRPGTSPHPG 352


>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
          Length = 962

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 12/188 (6%)

Query: 41  PCMAPGAARG--RGKPALGAHGAGCSSMGGAP--PPTDPGRAGLRSWGAAGSARGSEGRP 96
           P  +P A +   + +PA  + G   S    A   PP +PG   L +  AA     +E   
Sbjct: 487 PAPSPPAPKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAE 546

Query: 97  SSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPR-ALGRGRRPLRGRVLLRQLDPF 155
           +         P R+A R        ++   S+ R RPR  + R      GR+ L +  P 
Sbjct: 547 APPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPV 606

Query: 156 TRPRFPLQFFQGCPQPS------RCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASP 209
            R    L   QG P+P       R L    P+        P G R    +  A PG   P
Sbjct: 607 WRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREP 666

Query: 210 APLPARQP 217
            P  A++P
Sbjct: 667 CP-AAQEP 673


>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 48/201 (23%)

Query: 86  AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGR--RPL 143
           +G  R  EGRP++           R R R            SA   RP  L RG+  +P 
Sbjct: 6   SGEIRSEEGRPTTES---------RIRPRLAEALSQPTLRHSASALRPPRLSRGKDLKPR 56

Query: 144 RGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRW-RGHGLQPGGA--RAPGLQV 200
            GR      DP           +GC        RL   RW R   L P  A   APG + 
Sbjct: 57  CGRGPAHSPDPG----------EGC----EAWRRLSADRWPRPASLSPRAALASAPGQK- 101

Query: 201 PAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQ 260
              P PA  A LP  +P  GVRP    R G +QA G+P G C   +G             
Sbjct: 102 ---PQPARQAQLP--RPVSGVRPPPRGRVGLSQAPGRPLGACARAKG------------- 143

Query: 261 VRVQSHSFAPRPRAPLAVAPA 281
           +R+ + S  PRP  P+  + A
Sbjct: 144 IRLVNPS-PPRPPEPIPASAA 163



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 67/248 (27%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 54  PALGAHGAGCSSMG---GAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRR 110
           PA  A  +G ++ G    A P    GR         GSA  +   P  +Q   +  P   
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKGR---------GSAERTNHIPKDKQR--VAAPPPP 207

Query: 111 ARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLD-----PFTRP------- 158
            R R P C      G S P     A GR ++  R R L R        P TRP       
Sbjct: 208 ERPRVPFCRGSS--GLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSS 265

Query: 159 -RFPLQFFQG-----CPQPSRC-----LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPA 207
              PL FF        P+P+       LGRL P R    G   GG   P  +    P P 
Sbjct: 266 HSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPP 325

Query: 208 SPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHS 267
           +P   PA        P    R G   A G P     P R    A E G   +++      
Sbjct: 326 APTAWPAAGAPGAPNPAE-SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEE 384

Query: 268 FAPRPRAP 275
              R ++P
Sbjct: 385 TPGRRKSP 392


>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 48/201 (23%)

Query: 86  AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGR--RPL 143
           +G  R  EGRP++           R R R            SA   RP  L RG+  +P 
Sbjct: 6   SGEIRSEEGRPTTES---------RIRPRLAEALSQPTLRHSASALRPPRLSRGKDLKPR 56

Query: 144 RGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRW-RGHGLQPGGA--RAPGLQV 200
            GR      DP           +GC        RL   RW R   L P  A   APG + 
Sbjct: 57  CGRGPAHSPDPG----------EGC----EAWRRLSADRWPRPASLSPRAALASAPGQK- 101

Query: 201 PAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQ 260
              P PA  A LP  +P  GVRP    R G +QA G+P G C   +G             
Sbjct: 102 ---PQPARQAQLP--RPVSGVRPPPRGRVGLSQAPGRPLGACARAKG------------- 143

Query: 261 VRVQSHSFAPRPRAPLAVAPA 281
           +R+ + S  PRP  P+  + A
Sbjct: 144 IRLVNPS-PPRPPEPIPASAA 163



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 67/248 (27%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 54  PALGAHGAGCSSMG---GAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRR 110
           PA  A  +G ++ G    A P    GR         GSA  +   P  +Q   +  P   
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKGR---------GSAERTNHIPKDKQR--VAAPPPP 207

Query: 111 ARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLD-----PFTRP------- 158
            R R P C      G S P     A GR ++  R R L R        P TRP       
Sbjct: 208 ERPRVPFCRGSS--GLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSS 265

Query: 159 -RFPLQFFQG-----CPQPSRC-----LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPA 207
              PL FF        P+P+       LGRL P R    G   GG   P  +    P P 
Sbjct: 266 HSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPP 325

Query: 208 SPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHS 267
           +P   PA        P    R G   A G P     P R    A E G   +++      
Sbjct: 326 APTAWPAAGAPGAPNPAE-SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEE 384

Query: 268 FAPRPRAP 275
              R ++P
Sbjct: 385 TPGRRKSP 392


>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 48/201 (23%)

Query: 86  AGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGR--RPL 143
           +G  R  EGRP++           R R R            SA   RP  L RG+  +P 
Sbjct: 6   SGEIRSEEGRPTTES---------RIRPRLAEALSQPTLRHSASALRPPRLSRGKDLKPR 56

Query: 144 RGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRW-RGHGLQPGGA--RAPGLQV 200
            GR      DP           +GC        RL   RW R   L P  A   APG + 
Sbjct: 57  CGRGPAHSPDPG----------EGC----EAWRRLSADRWPRPASLSPRAALASAPGQK- 101

Query: 201 PAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQ 260
              P PA  A LP  +P  GVRP    R G +QA G+P G C   +G             
Sbjct: 102 ---PQPARQAQLP--RPVSGVRPPPRGRVGLSQAPGRPLGACARAKG------------- 143

Query: 261 VRVQSHSFAPRPRAPLAVAPA 281
           +R+ + S  PRP  P+  + A
Sbjct: 144 IRLVNPS-PPRPPEPIPASAA 163



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 67/248 (27%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 54  PALGAHGAGCSSMG---GAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRR 110
           PA  A  +G ++ G    A P    GR         GSA  +   P  +Q   +  P   
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKGR---------GSAERTNHIPKDKQR--VAAPPPP 207

Query: 111 ARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLD-----PFTRP------- 158
            R R P C      G S P     A GR ++  R R L R        P TRP       
Sbjct: 208 ERPRVPFCRGSS--GLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSSS 265

Query: 159 -RFPLQFFQG-----CPQPSRC-----LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPA 207
              PL FF        P+P+       LGRL P R    G   GG   P  +    P P 
Sbjct: 266 HSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKHRTLPAPP 325

Query: 208 SPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHS 267
           +P   PA        P    R G   A G P     P R    A E G   +++      
Sbjct: 326 APTAWPAAGAPGAPNPAE-SRRGPGPAQGPPSRRDEPRRVVIAARECGREGSELPPSGEE 384

Query: 268 FAPRPRAP 275
              R ++P
Sbjct: 385 TPGRRKSP 392


>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 356

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 80/289 (27%), Positives = 107/289 (37%), Gaps = 64/289 (22%)

Query: 64  SSMGGAP---PPTDPGRAGLRSWGAAGSAR--GSEGRPSSRQARPLRRPSRRARRRAPRC 118
           ++ GG P   P     R GLR+    GS    G+E RPSSR++    R   R RRR  + 
Sbjct: 61  ANRGGGPVGAPRVSRRREGLRALKVPGSEPQVGAEVRPSSRKSLSDHRGLGRGRRRRRQ- 119

Query: 119 APDRRCGDSAP----RHRPRALGRGRRPL--RGRVLLRQLDPFTRPRFPLQFFQGCPQPS 172
              RR G  AP    R +P    + + PL    R LL     +   R      +G  +  
Sbjct: 120 --RRRWGTQAPCGRLRAKPALQTQRKEPLVFTQRSLLHSSPRWFSSRHS-SISEG--EGD 174

Query: 173 RCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRA 232
           RC G  EP         PGG+  P   +P PP P SP    AR+      P      G +
Sbjct: 175 RC-GFAEP---------PGGSSPPAPPLPPPPKPGSPTQ-RAREASSWKPP------GHS 217

Query: 233 QAAGQPRGLCLPGRGR---DRAVEAGDAVAQVRVQSHSFAPRPRAPLAVA--PAALQRRE 287
             A   RG   P   R   + + E   +     + + + +P  R P      PAAL    
Sbjct: 218 HTAPPGRGTQRPLTQRHSSESSSELSSSAWPGTIWTSTLSPGQRLPTPPPPDPAAL---- 273

Query: 288 SEFTLMRMCREEQALRGLSFGLSLVQVACTPPACSPA----PLNPWEPQ 332
                             S+GL   Q AC P   + A     + PWE Q
Sbjct: 274 -----------------TSWGLPQQQGACVPEGIALALRCRAMGPWEEQ 305


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 61/252 (24%)

Query: 51  RGKPALGAHGAGCSSMGGAPPP--------TDPGRAGLRSWGAAGSARGSE---GRPS-- 97
           R +PA      GCSS   +P P        T PGRA     G     +GS+    RPS  
Sbjct: 118 RLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRA 177

Query: 98  ----------------SRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
                            R ARP RRP    + R       R CG           G G  
Sbjct: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG---------TWGSGGG 228

Query: 142 PLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP 201
           P          D  +    P+  F G  +   C GR   RR  G G QPG      L  P
Sbjct: 229 PGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGR---RRSNGQGTQPGCR----LLSP 281

Query: 202 APPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQV 261
           APP          R+ ++  +PL    GG   +   P  +  P R   R+V      A  
Sbjct: 282 APP----------RRRYR--KPLTLSFGGGVSSPTHP--VVAPRRHFPRSVPR--FPAGF 325

Query: 262 RVQSHSFAPRPR 273
           R  S   AP+P+
Sbjct: 326 RTHSLGTAPKPK 337


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 61/252 (24%)

Query: 51  RGKPALGAHGAGCSSMGGAPPP--------TDPGRAGLRSWGAAGSARGSE---GRPS-- 97
           R +PA      GCSS   +P P        T PGRA     G     +GS+    RPS  
Sbjct: 118 RLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRA 177

Query: 98  ----------------SRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
                            R ARP RRP    + R       R CG           G G  
Sbjct: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG---------TWGSGGG 228

Query: 142 PLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP 201
           P          D  +    P+  F G  +   C GR   RR  G G QPG      L  P
Sbjct: 229 PGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGR---RRSNGQGTQPGCR----LLSP 281

Query: 202 APPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQV 261
           APP          R+ ++  +PL    GG   +   P  +  P R   R+V      A  
Sbjct: 282 APP----------RRRYR--KPLTLSFGGGVSSPTHP--VVAPRRHFPRSVPR--FPAGF 325

Query: 262 RVQSHSFAPRPR 273
           R  S   AP+P+
Sbjct: 326 RTHSLGTAPKPK 337


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 69/252 (27%), Positives = 86/252 (34%), Gaps = 61/252 (24%)

Query: 51  RGKPALGAHGAGCSSMGGAPPP--------TDPGRAGLRSWGAAGSARGSE---GRPS-- 97
           R +PA      GCSS   +P P        T PGRA     G     +GS+    RPS  
Sbjct: 118 RLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRA 177

Query: 98  ----------------SRQARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRR 141
                            R ARP RRP    + R       R CG           G G  
Sbjct: 178 GGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCG---------TWGSGGG 228

Query: 142 PLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVP 201
           P          D  +    P+  F G  +   C GR   RR  G G QPG      L  P
Sbjct: 229 PGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGR---RRSNGQGTQPGCR----LLSP 281

Query: 202 APPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQV 261
           APP          R+ ++  +PL    GG   +   P  +  P R   R+V      A  
Sbjct: 282 APP----------RRRYR--KPLTLSFGGGVSSPTHP--VVAPRRHFPRSVPR--FPAGF 325

Query: 262 RVQSHSFAPRPR 273
           R  S   AP+P+
Sbjct: 326 RTHSLGTAPKPK 337


>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
           sapiens]
          Length = 238

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 41  PCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSARGSEGRPSSR 99
           P M+ G A   G PA  A   G +  G +PPP + GRAG  RS G AG+A GS    +S 
Sbjct: 96  PVMSHGEA---GTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151

Query: 100 QARPLRRPSRRARRR---APRCAP---DRRCGDSAP-RHRPRALGRGRR 141
              P RR  R AR R    P   P    ++   S P   RP  L  G+R
Sbjct: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200


>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
           sapiens]
          Length = 238

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 41  PCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSARGSEGRPSSR 99
           P M+ G A   G PA  A   G +  G +PPP + GRAG  RS G AG+A GS    +S 
Sbjct: 96  PVMSHGEA---GTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151

Query: 100 QARPLRRPSRRARRR---APRCAP---DRRCGDSAP-RHRPRALGRGRR 141
              P RR  R AR R    P   P    ++   S P   RP  L  G+R
Sbjct: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 64/239 (26%), Positives = 89/239 (37%), Gaps = 24/239 (10%)

Query: 48  ARGRGK--PALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLR 105
           ARG+    P   A  AG       P P  P  A  R   AAG+  G   RP+   ARP  
Sbjct: 134 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP-RPAP-SARP-- 189

Query: 106 RPSRRARRRAPRCAPDRRCGDSAP--RHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQ 163
           RP     R++   A +    + +P  R RP A G  +RP   R L     P + P     
Sbjct: 190 RPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP-ASRSLSSSATPLSSPARSGP 248

Query: 164 FFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRP 223
             +G P+      + +P+  +   L+P     P        GP S +PL    P     P
Sbjct: 249 SARGTPRAPAHPSQPKPKGLQ--ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSP 306

Query: 224 LGCCRGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQ-SHSFAPR-PRAPLAVAP 280
                      +  P    LP        +A  ++    +Q +HSF P  P +PLA  P
Sbjct: 307 -----------SAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPP 354



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 185 GHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCC----RGGRAQAAGQPRG 240
           G   +   ARAPGL  P PPG  SP P P   P   +R LG      R   A+ AG   G
Sbjct: 11  GAAARTPAARAPGLLTPRPPG--SPRPPPPVTP-AALRVLGAAGAVGRKPLAERAGGIGG 67

Query: 241 LCLP 244
             +P
Sbjct: 68  ATIP 71


>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
           sapiens]
          Length = 238

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 42/109 (38%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 41  PCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL-RSWGAAGSARGSEGRPSSR 99
           P M+ G A   G PA  A   G +  G +PPP + GRAG  RS G AG+A GS    +S 
Sbjct: 96  PVMSHGEA---GTPAPRAARLG-APRGASPPPGEEGRAGAWRSPGEAGAADGSPHVSTSP 151

Query: 100 QARPLRRPSRRARRR---APRCAP---DRRCGDSAP-RHRPRALGRGRR 141
              P RR  R AR R    P   P    ++   S P   RP  L  G+R
Sbjct: 152 TPAPGRRGGREARLRPMPTPSWIPVSSHKKAARSEPAERRPSLLQGGQR 200


>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
           sapiens]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 78  AGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP--DRRCGDSAPRHRPRA 135
           + LR+  + G + G +  P  R+ RP     R +  R+PRC P   R+ G      R  A
Sbjct: 243 SALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARGAA 302

Query: 136 LGRGRRPLRGRVLLRQ 151
           LG   R L GR LLR+
Sbjct: 303 LGGAFRVLAGRALLRR 318


>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
           sapiens]
          Length = 321

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 78  AGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRARRRAPRCAP--DRRCGDSAPRHRPRA 135
           + LR+  + G + G +  P  R+ RP     R +  R+PRC P   R+ G      R  A
Sbjct: 243 SALRAALSCGPSWGEDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPGRRDARGAA 302

Query: 136 LGRGRRPLRGRVLLRQ 151
           LG   R L GR LLR+
Sbjct: 303 LGGAFRVLAGRALLRR 318


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 70/249 (28%), Positives = 87/249 (34%), Gaps = 61/249 (24%)

Query: 45  PGAARGR-GKPALGAHGAGCSSMGGAPPPTDPG------RAGLRSWGAAGSARGSEGRPS 97
           PG+A     KP+  +      +   AP P   G      R+   S G  G A G  GR  
Sbjct: 328 PGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRR 387

Query: 98  SRQARPLRRPS-----RRARRRAPRCAPDRRCGDSAPRHRPRA-LGRGRRPLRGRVLLRQ 151
            R+ R  R  S     RR  RR PR AP R    S  R R  +  G GR           
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGR----------- 436

Query: 152 LDPFTRPRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAP 211
                          G P P       EP   RGHG    G RA   + P    PAS +P
Sbjct: 437 ---------------GAPGPGP-----EPGSERGHG--GHGKRAK--ERPPRARPASTSP 472

Query: 212 LPARQPHKGVRPLGCCRGGRAQAAGQPRGLC---LPGRGRDRAVEAGDAVAQVRVQSHSF 268
            P     +G  P G  +         PR       P + R R+       A+ R  S S 
Sbjct: 473 SPGAHGRRG-GPEG--KSSSRSPGPHPRSWSSSRSPSKSRSRS-------AEKRPHSPSR 522

Query: 269 APRPRAPLA 277
           +P P+ PL+
Sbjct: 523 SPSPKKPLS 531



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 44/167 (26%), Positives = 58/167 (34%), Gaps = 16/167 (9%)

Query: 108 SRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
           SRR RR   R +  +R   +  + RP     GRR  R             P     +   
Sbjct: 218 SRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHR-----HSSGSSHSPSLSSHY--- 269

Query: 168 CPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCC 227
               SR   RL P+  R  G + G  R+ G + P+P G  S    P R    G R     
Sbjct: 270 --SDSRSPSRLSPKH-RDEGRKTGSQRSSGSRSPSPSG-GSGWGSPQRNGGSGQR--SGA 323

Query: 228 RGGRAQAAGQPRGLCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRA 274
            GGR  +A  P     P     R  +   A A         +P PR+
Sbjct: 324 HGGRPGSAHSPPD--KPSSPSPRVRDKAAAAAPTPPARGKESPSPRS 368


>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
          Length = 705

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 62/220 (28%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 42  CMAPGAARG-RGKPAL-GAHG-AGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGRPSS 98
           C  P A +G  G+P L G+ G AG S +G   PP  PG  G   +       G  G P  
Sbjct: 117 CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 176

Query: 99  RQARPLRRP-----SRRARRRAPRCA--PDRRCGDSAPR--HRPRALGRGRRPLRGRVLL 149
           +    L  P      +  +    +C   P R C  S P      + +     PL   V L
Sbjct: 177 KGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRL 236

Query: 150 RQLDPFTRPRFPLQ----FFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG 205
                  R  F  +      QG P P    G   P    GH   PG    PGL  P PPG
Sbjct: 237 APPPVIKRRTFQGEQSQASIQGPPGPP---GPPGPSGPLGHPGLPGPMGPPGL--PGPPG 291

Query: 206 PASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPG 245
           P     +      KG R +     G+  A G P G+ + G
Sbjct: 292 PKGDPGIQGYHGRKGERGMP-GMPGKHGAKGAP-GIAVAG 329


>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 37  SFCEPCMAPGA-ARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGR 95
           S  E   A GA  R  G+   G  G G  S  G   P+ PG  G    G A S  G  GR
Sbjct: 50  SRAESSAARGARVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGGGAASQPGLCGR 109

Query: 96  PSSRQARPLRRP--------SRRARRRAPRCA 119
             + + R   RP        +RR R RAPR A
Sbjct: 110 AGTGEKRKWERPGKETWKPKTRRPRLRAPRAA 141



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 43/185 (23%)

Query: 62  GCSSMG------GAPPPTDPGRAGLRSWGAAGSARGSEG----RPSSRQARPLRRPSRRA 111
           GC  +G      GA P   P RA  R  GA+ +  G  G    R     +R     +R A
Sbjct: 2   GCEVVGFFPAQHGARPSEKPPRAAQRQ-GASRAGTGGSGVLTPRAKGSTSRAESSAARGA 60

Query: 112 RRRAP----RCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
           R RAP    R  P R    +A    P   G G R   G                      
Sbjct: 61  RVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGG--------------------GA 100

Query: 168 CPQPSRC--LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
             QP  C   G  E R+W   G +      P  + P    P +   LP  + H    P G
Sbjct: 101 ASQPGLCGRAGTGEKRKWERPGKE---TWKPKTRRPRLRAPRAALLLPRPRTH---GPAG 154

Query: 226 CCRGG 230
             RGG
Sbjct: 155 GTRGG 159



 Score = 29.3 bits (64), Expect = 9.5
 Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 180 PRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPR 239
           PR  +  G    G    G+  P   G  S A   A +  +   P   CRGG  +      
Sbjct: 22  PRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRTCRGGPGRGYESAA 81

Query: 240 GLCLP----GRGRDRAVEA------------GDAVAQVRVQSHSFAPRPRAPLAVAPAA 282
           G  LP    G GRD    A            G+     R    ++ P+ R P   AP A
Sbjct: 82  GNSLPSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRA 140


>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 37  SFCEPCMAPGA-ARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGR 95
           S  E   A GA  R  G+   G  G G  S  G   P+ PG  G    G A S  G  GR
Sbjct: 50  SRAESSAARGARVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGGGAASQPGLCGR 109

Query: 96  PSSRQARPLRRP--------SRRARRRAPRCA 119
             + + R   RP        +RR R RAPR A
Sbjct: 110 AGTGEKRKWERPGKETWKPKTRRPRLRAPRAA 141



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 43/185 (23%)

Query: 62  GCSSMG------GAPPPTDPGRAGLRSWGAAGSARGSEG----RPSSRQARPLRRPSRRA 111
           GC  +G      GA P   P RA  R  GA+ +  G  G    R     +R     +R A
Sbjct: 2   GCEVVGFFPAQHGARPSEKPPRAAQRQ-GASRAGTGGSGVLTPRAKGSTSRAESSAARGA 60

Query: 112 RRRAP----RCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
           R RAP    R  P R    +A    P   G G R   G                      
Sbjct: 61  RVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGG--------------------GA 100

Query: 168 CPQPSRC--LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
             QP  C   G  E R+W   G +      P  + P    P +   LP  + H    P G
Sbjct: 101 ASQPGLCGRAGTGEKRKWERPGKE---TWKPKTRRPRLRAPRAALLLPRPRTH---GPAG 154

Query: 226 CCRGG 230
             RGG
Sbjct: 155 GTRGG 159



 Score = 29.3 bits (64), Expect = 9.5
 Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 180 PRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPR 239
           PR  +  G    G    G+  P   G  S A   A +  +   P   CRGG  +      
Sbjct: 22  PRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRTCRGGPGRGYESAA 81

Query: 240 GLCLP----GRGRDRAVEA------------GDAVAQVRVQSHSFAPRPRAPLAVAPAA 282
           G  LP    G GRD    A            G+     R    ++ P+ R P   AP A
Sbjct: 82  GNSLPSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRA 140


>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 37  SFCEPCMAPGA-ARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGLRSWGAAGSARGSEGR 95
           S  E   A GA  R  G+   G  G G  S  G   P+ PG  G    G A S  G  GR
Sbjct: 50  SRAESSAARGARVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGGGAASQPGLCGR 109

Query: 96  PSSRQARPLRRP--------SRRARRRAPRCA 119
             + + R   RP        +RR R RAPR A
Sbjct: 110 AGTGEKRKWERPGKETWKPKTRRPRLRAPRAA 141



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 43/185 (23%)

Query: 62  GCSSMG------GAPPPTDPGRAGLRSWGAAGSARGSEG----RPSSRQARPLRRPSRRA 111
           GC  +G      GA P   P RA  R  GA+ +  G  G    R     +R     +R A
Sbjct: 2   GCEVVGFFPAQHGARPSEKPPRAAQRQ-GASRAGTGGSGVLTPRAKGSTSRAESSAARGA 60

Query: 112 RRRAP----RCAPDRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQG 167
           R RAP    R  P R    +A    P   G G R   G                      
Sbjct: 61  RVRAPGRTCRGGPGRGYESAAGNSLPSVPGGGGRDPGG--------------------GA 100

Query: 168 CPQPSRC--LGRLEPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
             QP  C   G  E R+W   G +      P  + P    P +   LP  + H    P G
Sbjct: 101 ASQPGLCGRAGTGEKRKWERPGKE---TWKPKTRRPRLRAPRAALLLPRPRTH---GPAG 154

Query: 226 CCRGG 230
             RGG
Sbjct: 155 GTRGG 159



 Score = 29.3 bits (64), Expect = 9.5
 Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 180 PRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPR 239
           PR  +  G    G    G+  P   G  S A   A +  +   P   CRGG  +      
Sbjct: 22  PRAAQRQGASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAPGRTCRGGPGRGYESAA 81

Query: 240 GLCLP----GRGRDRAVEA------------GDAVAQVRVQSHSFAPRPRAPLAVAPAA 282
           G  LP    G GRD    A            G+     R    ++ P+ R P   AP A
Sbjct: 82  GNSLPSVPGGGGRDPGGGAASQPGLCGRAGTGEKRKWERPGKETWKPKTRRPRLRAPRA 140


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 63/235 (26%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 45  PGAARGRGKPALGAHGA----GCSSMGGAP-PPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
           PG+    G P +G  G     G   + G P  P  PGR GL          G +G P   
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA 754

Query: 100 QARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRP-LRGRVLLR-QLDPFTR 157
              P   P     + A     DR  G   P   P   G    P  +G V    Q  P   
Sbjct: 755 LPGPPGPPGLPGFKGALGPKGDR--GFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812

Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG-------PASPA 210
           P  P    QG P P    G +      G   + G    PGL VP PPG       P +P 
Sbjct: 813 PGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPG 872

Query: 211 PL-----PARQPHKGVRPLGCCRG--GRAQAAGQPRGLCLPGRGRDRAVEAGDAV 258
           P+     P      G       +G  G     G P  L +PGR     ++  D +
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927



 Score = 34.3 bits (77), Expect = 0.29
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 67   GGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRP 107
            G   PP DPGR GL  +  AG  +G  G P     R L  P
Sbjct: 1406 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 63/235 (26%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 45  PGAARGRGKPALGAHGA----GCSSMGGAP-PPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
           PG+    G P +G  G     G   + G P  P  PGR GL          G +G P   
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA 754

Query: 100 QARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRP-LRGRVLLR-QLDPFTR 157
              P   P     + A     DR  G   P   P   G    P  +G V    Q  P   
Sbjct: 755 LPGPPGPPGLPGFKGALGPKGDR--GFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812

Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG-------PASPA 210
           P  P    QG P P    G +      G   + G    PGL VP PPG       P +P 
Sbjct: 813 PGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPG 872

Query: 211 PL-----PARQPHKGVRPLGCCRG--GRAQAAGQPRGLCLPGRGRDRAVEAGDAV 258
           P+     P      G       +G  G     G P  L +PGR     ++  D +
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927



 Score = 34.3 bits (77), Expect = 0.29
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 67   GGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRP 107
            G   PP DPGR GL  +  AG  +G  G P     R L  P
Sbjct: 1400 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1440


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 63/235 (26%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 45  PGAARGRGKPALGAHGA----GCSSMGGAP-PPTDPGRAGLRSWGAAGSARGSEGRPSSR 99
           PG+    G P +G  G     G   + G P  P  PGR GL          G +G P   
Sbjct: 695 PGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA 754

Query: 100 QARPLRRPSRRARRRAPRCAPDRRCGDSAPRHRPRALGRGRRP-LRGRVLLR-QLDPFTR 157
              P   P     + A     DR  G   P   P   G    P  +G V    Q  P   
Sbjct: 755 LPGPPGPPGLPGFKGALGPKGDR--GFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGP 812

Query: 158 PRFPLQFFQGCPQPSRCLGRLEPRRWRGHGLQPGGARAPGLQVPAPPG-------PASPA 210
           P  P    QG P P    G +      G   + G    PGL VP PPG       P +P 
Sbjct: 813 PGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPG 872

Query: 211 PL-----PARQPHKGVRPLGCCRG--GRAQAAGQPRGLCLPGRGRDRAVEAGDAV 258
           P+     P      G       +G  G     G P  L +PGR     ++  D +
Sbjct: 873 PIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGL 927



 Score = 34.3 bits (77), Expect = 0.29
 Identities = 17/41 (41%), Positives = 19/41 (46%)

Query: 67   GGAPPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRP 107
            G   PP DPGR GL  +  AG  +G  G P     R L  P
Sbjct: 1403 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443


>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
           sapiens]
          Length = 177

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 69  APPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRA---RRRAPRCAPDRRCG 125
           APP   PG A  R  G      GS   P+  +ARPL  P R A   RRR      D R G
Sbjct: 85  APPRPVPGAARWR--GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVG 142

Query: 126 DSAPRHRPRALGR 138
           D     RP A GR
Sbjct: 143 DGERELRPDARGR 155



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 32/95 (33%), Positives = 35/95 (36%), Gaps = 22/95 (23%)

Query: 136 LGRGRRPLRGRVLLRQLDPFTRPR-------FPLQFF--------QGCPQPSRCLGRLEP 180
           LG G  P RGR+    L    RP         PL+             P+P  C  R  P
Sbjct: 29  LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCR-RAPP 87

Query: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPAR 215
           R        PG AR  G   P P  PA PAP  AR
Sbjct: 88  RP------VPGAARWRGRPEPRPGSPAGPAPTRAR 116


>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
           sapiens]
          Length = 177

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 69  APPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRA---RRRAPRCAPDRRCG 125
           APP   PG A  R  G      GS   P+  +ARPL  P R A   RRR      D R G
Sbjct: 85  APPRPVPGAARWR--GRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARVG 142

Query: 126 DSAPRHRPRALGR 138
           D     RP A GR
Sbjct: 143 DGERELRPDARGR 155



 Score = 30.0 bits (66), Expect = 5.5
 Identities = 32/95 (33%), Positives = 35/95 (36%), Gaps = 22/95 (23%)

Query: 136 LGRGRRPLRGRVLLRQLDPFTRPR-------FPLQFF--------QGCPQPSRCLGRLEP 180
           LG G  P RGR+    L    RP         PL+             P+P  C  R  P
Sbjct: 29  LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCR-RAPP 87

Query: 181 RRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPAR 215
           R        PG AR  G   P P  PA PAP  AR
Sbjct: 88  RP------VPGAARWRGRPEPRPGSPAGPAPTRAR 116


>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
          Length = 234

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 40  EPCMAPGAARGRGKPALGAHGAGCSSMGGAPPPTDPGRAGL---RSWGAAGSARGSEGRP 96
           EP      ARG    A  A G  C  +G AP PT PGR G     +WG    A G  G P
Sbjct: 5   EPACTMDQARGLDDAA--ARGGQCPGLGPAPTPTPPGRLGAPYSEAWGYFHLAPGRPGHP 62

Query: 97  SSRQA 101
           S   A
Sbjct: 63  SGHWA 67


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,608,543
Number of Sequences: 37866
Number of extensions: 1653376
Number of successful extensions: 14441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 909
Number of HSP's that attempted gapping in prelim test: 11365
Number of HSP's gapped (non-prelim): 3347
length of query: 536
length of database: 18,247,518
effective HSP length: 107
effective length of query: 429
effective length of database: 14,195,856
effective search space: 6090022224
effective search space used: 6090022224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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