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Search of human proteins with 239746204
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746204 PREDICTED: hypothetical protein XP_002343661 [Homo
sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746204 PREDICTED: hypothetical protein XP_002343661 [Homo ... 412 e-116
gi|239757193 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239751700 PREDICTED: hypothetical protein XP_002347968 [Homo ... 410 e-115
gi|55956899 keratin 9 [Homo sapiens] 33 0.12
gi|15718767 TRAAK [Homo sapiens] 33 0.12
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 31 0.58
gi|148664184 solute carrier family 22, member 10 [Homo sapiens] 31 0.76
gi|52218848 olfactory receptor, family 10, subfamily Q, member 1... 31 0.76
gi|52317194 olfactory receptor, family 2, subfamily D, member 3 ... 30 0.99
gi|4557595 forkhead box F2 [Homo sapiens] 30 1.3
gi|28376633 klotho beta [Homo sapiens] 30 1.3
gi|95089461 discs large homolog 5 [Homo sapiens] 30 1.7
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 30 1.7
gi|58219064 Src homology 2 domain containing E [Homo sapiens] 29 2.2
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 29 2.9
gi|31791024 keratin associated protein 19-6 [Homo sapiens] 29 2.9
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo ... 28 3.7
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo ... 28 3.7
gi|239745230 PREDICTED: hypothetical protein XP_002343393 [Homo ... 28 3.7
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 28 3.7
gi|239741594 PREDICTED: hypothetical protein XP_002342244 [Homo ... 28 3.7
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 28 3.7
gi|15147219 purine-rich element binding protein B [Homo sapiens] 28 3.7
gi|153792074 proline rich 12 [Homo sapiens] 28 3.7
gi|148664228 hypothetical protein LOC158293 [Homo sapiens] 28 3.7
gi|21704283 junctophilin 3 [Homo sapiens] 28 4.9
gi|4505835 polycystin 2 [Homo sapiens] 28 6.4
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 28 6.4
>gi|239746204 PREDICTED: hypothetical protein XP_002343661 [Homo
sapiens]
Length = 194
Score = 412 bits (1059), Expect = e-116
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV 60
MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV
Sbjct: 1 MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV 60
Query: 61 QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT 120
QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT
Sbjct: 61 QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT 120
Query: 121 LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQS 180
LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQS
Sbjct: 121 LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQS 180
Query: 181 LHCTDSPHCRSLSV 194
LHCTDSPHCRSLSV
Sbjct: 181 LHCTDSPHCRSLSV 194
>gi|239757193 PREDICTED: hypothetical protein [Homo sapiens]
Length = 397
Score = 410 bits (1054), Expect = e-115
Identities = 193/194 (99%), Positives = 193/194 (99%)
Query: 1 MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV 60
MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV
Sbjct: 204 MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV 263
Query: 61 QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT 120
QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT
Sbjct: 264 QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT 323
Query: 121 LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQS 180
LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESY APQS
Sbjct: 324 LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYAAPQS 383
Query: 181 LHCTDSPHCRSLSV 194
LHCTDSPHCRSLSV
Sbjct: 384 LHCTDSPHCRSLSV 397
>gi|239751700 PREDICTED: hypothetical protein XP_002347968 [Homo
sapiens]
Length = 215
Score = 410 bits (1054), Expect = e-115
Identities = 193/194 (99%), Positives = 193/194 (99%)
Query: 1 MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV 60
MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV
Sbjct: 22 MTSQSPRVNTSSGSSCTRVPFSSDVCRCTVTTWPLTGRLEPGGPGTSVFFLNSPFPARNV 81
Query: 61 QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT 120
QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT
Sbjct: 82 QPLFWGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQVILFLLFLLLFLLT 141
Query: 121 LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQS 180
LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESY APQS
Sbjct: 142 LCILNPIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYAAPQS 201
Query: 181 LHCTDSPHCRSLSV 194
LHCTDSPHCRSLSV
Sbjct: 202 LHCTDSPHCRSLSV 215
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 135 RWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSG-GQRCGS 172
R GG +GRG RG S + GG+G G G G G R GS
Sbjct: 478 RGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGS 516
>gi|15718767 TRAAK [Homo sapiens]
Length = 393
Score = 33.5 bits (75), Expect = 0.12
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 80 LSGQGPRLLSLLRRGLSH---VLQRWQLTQVILFLLFLLLFLLTLCIL 124
L+G G RL S LR G+ H + +W + ++ +L +LFLL C+L
Sbjct: 135 LAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLL 182
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 31.2 bits (69), Expect = 0.58
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 135 RWDPGGQWGRGLRGFSTRCHAAGGT-GIGPGSGGQ 168
RW GG+ GRG RG +R GGT G G G GG+
Sbjct: 1681 RWSRGGR-GRGGRGRGSRGRGGGGTRGRGRGRGGR 1714
>gi|148664184 solute carrier family 22, member 10 [Homo sapiens]
Length = 541
Score = 30.8 bits (68), Expect = 0.76
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 94 GLSHVLQRWQLTQVILFLLFLLLFLLTLCILNPIQYLEVLERWDPG 139
GL++V + WQ V+ + F + FLL+ ++ ++L + + D G
Sbjct: 250 GLAYVFRDWQTLHVVASVPFFVFFLLSRWLVESARWLIITNKLDEG 295
>gi|52218848 olfactory receptor, family 10, subfamily Q, member 1
[Homo sapiens]
Length = 319
Score = 30.8 bits (68), Expect = 0.76
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 106 QVILFLLFLLLFLLTLC 122
QV+LFLLFLLL+L+ LC
Sbjct: 28 QVLLFLLFLLLYLMILC 44
>gi|52317194 olfactory receptor, family 2, subfamily D, member 3
[Homo sapiens]
Length = 330
Score = 30.4 bits (67), Expect = 0.99
Identities = 15/28 (53%), Positives = 22/28 (78%), Gaps = 4/28 (14%)
Query: 94 GLSHVLQRWQLTQVILFLLFLLLFLLTL 121
GLS LQ TQ++LF+LFL+++LLT+
Sbjct: 32 GLSQDLQ----TQILLFILFLIIYLLTV 55
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 150 STRCHAAGGTGIGPGSGGQRCGSESYTAPQ 179
S C +AGG G G GSGG + S P+
Sbjct: 70 SAACKSAGGGGAGAGSGGAKKASSGLRRPE 99
>gi|28376633 klotho beta [Homo sapiens]
Length = 1044
Score = 30.0 bits (66), Expect = 1.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 47 SVFFLNSPFPARNVQPLFWGRGWGGLGLHGSKELSGQGPRL 87
S FL FP FWG G G L + GS + G+GP +
Sbjct: 73 SQLFLYDTFPKN----FFWGIGTGALQVEGSWKKDGKGPSI 109
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 29.6 bits (65), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 35 LTGRLEPGGPGTSVFFLNSPFPARNVQ 61
L R EPG PG S FL+ PFP +Q
Sbjct: 852 LEDRKEPGPPGGSSSFLHKPFPGGPLQ 878
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 29.6 bits (65), Expect = 1.7
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 98 VLQRWQLTQVILFLLFLLLFLLTLCILNPIQY 129
+L +W L +LFLLF LFLLT L+P +Y
Sbjct: 2 MLPQWLL---LLFLLFFFLFLLTRGSLSPTKY 30
>gi|58219064 Src homology 2 domain containing E [Homo sapiens]
Length = 495
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 126 PIQYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSE 173
P+ V ER PGG G+ LR S AGG G GPG G + +E
Sbjct: 46 PLNLKTVSERAKPGGGGGK-LRKNSE----AGGAGPGPGKGRKNSAAE 88
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 143 GRGLRGFSTRCHAAGGTGIGPGSGG 167
GRG R +++ H +GG G G G GG
Sbjct: 23 GRGGRSHASKSHGSGGGGGGGGGGG 47
>gi|31791024 keratin associated protein 19-6 [Homo sapiens]
Length = 58
Score = 28.9 bits (63), Expect = 2.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 142 WGRGLRGFSTRCHAAGGTGIGPGSGGQRCGS 172
+G RG C GG G G G GG R GS
Sbjct: 4 YGSYYRGLGYGCGGFGGLGYGCGCGGYRYGS 34
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 128 QYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQSLHCTDS 186
Q L+ + PGG G+G G G G PG+ G RCG T L S
Sbjct: 74 QALKASDPLSPGGPAGKGGAGDPQ------GAGADPGNQGHRCGRMGVTEAARLQAHTS 126
>gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo
sapiens]
Length = 342
Score = 28.5 bits (62), Expect = 3.7
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 67 RGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQV-ILFLLFLLLFLL 119
RG GG G G G+G + G LQ QL QV +L LLFLLLF L
Sbjct: 218 RGDGGSGRQGGGGHWGRG-------QPGGGLPLQHLQLLQVFVLVLLFLLLFFL 264
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 128 QYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQSLHCTDS 186
Q L+ + PGG G+G G G G PG+ G RCG T L S
Sbjct: 74 QALKASDPLSPGGPAGKGGAGDPQ------GAGADPGNQGHRCGRMGVTEAARLQAHTS 126
>gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo
sapiens]
Length = 342
Score = 28.5 bits (62), Expect = 3.7
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 67 RGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQV-ILFLLFLLLFLL 119
RG GG G G G+G + G LQ QL QV +L LLFLLLF L
Sbjct: 218 RGDGGSGRQGGGGHWGRG-------QPGGGLPLQHLQLLQVFVLVLLFLLLFFL 264
>gi|239745230 PREDICTED: hypothetical protein XP_002343393 [Homo
sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 3.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 145 GLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQSLHCTDSPHCR 190
G R T C GG +GP GG G+ Q +H ++P CR
Sbjct: 15 GNRRTKTICPFPGGMQLGPSQGGSSRGA----LEQLMHGYNAPFCR 56
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 28.5 bits (62), Expect = 3.7
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 128 QYLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQSLHCTDS 186
Q L+ + PGG G+G G G G PG+ G RCG T L S
Sbjct: 24 QALKASDPLSPGGPAGKGGAGDPQ------GAGADPGNQGHRCGRMGVTEAARLQAHTS 76
>gi|239741594 PREDICTED: hypothetical protein XP_002342244 [Homo
sapiens]
Length = 342
Score = 28.5 bits (62), Expect = 3.7
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 67 RGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQRWQLTQV-ILFLLFLLLFLL 119
RG GG G G G+G + G LQ QL QV +L LLFLLLF L
Sbjct: 218 RGDGGSGRQGGGGHWGRG-------QPGGGLPLQHLQLLQVFVLVLLFLLLFFL 264
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 138 PGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSES 174
PGG G G G S+ + GG G G GSGG S S
Sbjct: 197 PGGLGGGG-GGGSSSGSSGGGGGSGSGSGGSSSSSSS 232
>gi|15147219 purine-rich element binding protein B [Homo sapiens]
Length = 312
Score = 28.5 bits (62), Expect = 3.7
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 129 YLEVLERWDPGGQWGRGLRGFSTRCHAAGGTGIGPGSGGQRCGSESYTAPQSL 181
YL++ E Q GR LR T GG G GPG GG + G Q L
Sbjct: 132 YLDLKEN-----QRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGL 179
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 145 GLRGFSTRCHAAGGTGIGPGSGGQR---------CGSESY-------TAPQSLHCTDSPH 188
G G +T AAGG G G G GG R G Y T P T +P
Sbjct: 357 GASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPK 416
Query: 189 CRSL 192
C+SL
Sbjct: 417 CQSL 420
>gi|148664228 hypothetical protein LOC158293 [Homo sapiens]
Length = 256
Score = 28.5 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 65 WGRGWGGLGLHGSKELSGQGPRLLSLLRRGLSHVLQR 101
W R W GLH + GP LS R G + QR
Sbjct: 40 WRRAWAARGLHPRPSILQPGPARLSRARAGGTRCPQR 76
>gi|21704283 junctophilin 3 [Homo sapiens]
Length = 748
Score = 28.1 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 140 GQWGRGLR-GFSTRCHAAGGTGIGPGSGGQRCG 171
G W GL+ G+ T ++ GGT G GG R G
Sbjct: 109 GTWSNGLQDGYGTETYSDGGTYQGQWVGGMRQG 141
>gi|4505835 polycystin 2 [Homo sapiens]
Length = 968
Score = 27.7 bits (60), Expect = 6.4
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 70 GGLGLHGSKELSGQGPRLL--SLLRRGL-----------SHVLQRWQLTQVILFLLFLLL 116
GG LH L GQ PR+ L RGL S + L V+ L+ LL
Sbjct: 170 GGDPLHRHLPLEGQPPRVAWAERLVRGLRGLWGTRLMEESSTNREKYLKSVLRELVTYLL 229
Query: 117 FLLTLCIL 124
FL+ LCIL
Sbjct: 230 FLIVLCIL 237
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 27.7 bits (60), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 140 GQWGRGLR-GFSTRCHAAGGTGIGPGSGGQRCG 171
G W GL+ G+ T +A GGT G + G R G
Sbjct: 108 GTWNNGLQDGYGTETYADGGTYQGQFTNGMRHG 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,421,812
Number of Sequences: 37866
Number of extensions: 504403
Number of successful extensions: 2103
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2048
Number of HSP's gapped (non-prelim): 70
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.