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Search of human proteins with 239746147
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo
sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo ... 474 e-134
gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo ... 474 e-134
gi|239757132 PREDICTED: hypothetical protein [Homo sapiens] 437 e-123
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 35 0.058
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens] 35 0.076
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ... 35 0.076
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ... 35 0.076
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens] 35 0.076
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 34 0.13
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 34 0.13
gi|116292174 fidgetin-like 2 [Homo sapiens] 33 0.17
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 33 0.29
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 33 0.29
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 33 0.29
gi|167621456 kinase suppressor of ras 2 [Homo sapiens] 32 0.38
gi|110347412 latent transforming growth factor beta binding prot... 32 0.49
gi|56243533 stromal cell-derived factor 2-like 1 precursor [Homo... 32 0.49
gi|118402590 myosin XV [Homo sapiens] 32 0.64
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.64
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 31 0.84
gi|18129690 T-box 4 [Homo sapiens] 31 1.1
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|91208420 bassoon protein [Homo sapiens] 31 1.1
gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens] 31 1.1
gi|14149724 mesoderm posterior 1 [Homo sapiens] 31 1.1
gi|120587019 zinc finger protein 318 [Homo sapiens] 31 1.1
gi|46409340 ankyrin repeat domain 13 family, member D [Homo sapi... 31 1.1
gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulat... 30 1.4
gi|5922001 dual-specificity tyrosine-(Y)-phosphorylation regulat... 30 1.4
>gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo
sapiens]
Length = 241
Score = 474 bits (1220), Expect = e-134
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ 60
MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ
Sbjct: 1 MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ 60
Query: 61 VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT 120
VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT
Sbjct: 61 VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT 120
Query: 121 TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ 180
TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ
Sbjct: 121 TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ 180
Query: 181 LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREESSAAELHCCRTTASSRLM 240
LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREESSAAELHCCRTTASSRLM
Sbjct: 181 LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREESSAAELHCCRTTASSRLM 240
Query: 241 T 241
T
Sbjct: 241 T 241
>gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo
sapiens]
Length = 241
Score = 474 bits (1220), Expect = e-134
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ 60
MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ
Sbjct: 1 MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ 60
Query: 61 VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT 120
VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT
Sbjct: 61 VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT 120
Query: 121 TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ 180
TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ
Sbjct: 121 TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ 180
Query: 181 LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREESSAAELHCCRTTASSRLM 240
LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREESSAAELHCCRTTASSRLM
Sbjct: 181 LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREESSAAELHCCRTTASSRLM 240
Query: 241 T 241
T
Sbjct: 241 T 241
>gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 437 bits (1123), Expect = e-123
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ 60
MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ
Sbjct: 1 MRCRISATAAMLSASRSRTAITSSLLWGRGRGGLHLALGLGLLAAAFAELRLQPLVLCSQ 60
Query: 61 VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT 120
VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT
Sbjct: 61 VLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPT 120
Query: 121 TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ 180
TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ
Sbjct: 121 TSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGVRELLQ 180
Query: 181 LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREE 222
LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREE
Sbjct: 181 LQFKLSRRGHRLAFPHLERLQLLLQLRHIVLVGQRAVPLREE 222
Score = 42.0 bits (97), Expect = 5e-04
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 223 SSAAELHCCRTTASSRLMT 241
SSAAELHCCRTTASSRLMT
Sbjct: 325 SSAAELHCCRTTASSRLMT 343
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 35.0 bits (79), Expect = 0.058
Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 35/108 (32%)
Query: 94 CRSSRPSARAW-------------ASRRRTLISSSCSSPTTSFRGDSFQ-RPPRARW--- 136
CRS+ PS++ W S R + SSS SS ++S R S PP RW
Sbjct: 1409 CRSASPSSQGWQGRRGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKRWRRS 1468
Query: 137 AWGVKPRSRR------------------SASAQEPRGDGPRGRSARRR 166
+ RSRR S+S R PR RS RRR
Sbjct: 1469 SCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRR 1516
>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 34.7 bits (78), Expect = 0.076
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 129 QRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPG 174
+R PR R G + R+RR A Q PRG GP R+ RR P PG
Sbjct: 14 ERRPRQRQHRGRERRTRRDA--QGPRGGGPGFRAGGRRTPDKGRPG 57
>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
sapiens]
Length = 95
Score = 34.7 bits (78), Expect = 0.076
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 129 QRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPG 174
+R PR R G + R+RR A Q PRG GP R+ RR P PG
Sbjct: 14 ERRPRQRQHRGRERRTRRDA--QGPRGGGPGFRAGGRRTPDKGRPG 57
>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
sapiens]
Length = 95
Score = 34.7 bits (78), Expect = 0.076
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 129 QRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPG 174
+R PR R G + R+RR A Q PRG GP R+ RR P PG
Sbjct: 14 ERRPRQRQHRGRERRTRRDA--QGPRGGGPGFRAGGRRTPDKGRPG 57
>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 34.7 bits (78), Expect = 0.076
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 129 QRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPG 174
+R PR R G + R+RR A Q PRG GP R+ RR P PG
Sbjct: 14 ERRPRQRQHRGRERRTRRDA--QGPRGGGPGFRAGGRRTPDKGRPG 57
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 67 QRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGD 126
+R+ L+ ++ S+ SSS++ SS S+ + +S + SSS SS ++S
Sbjct: 132 RRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 191
Query: 127 SFQRPPRARWAWGVKP----RSRRSASAQEPRGDGPRGRSARRRP 167
SF +P + KP R +SA + R + + ++P
Sbjct: 192 SFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKP 236
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 33.9 bits (76), Expect = 0.13
Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 88 SSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGV---KPRS 144
S S T R +R+ +RR SSP T R D R R++ A + P
Sbjct: 381 SPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDILSRRERSKDASPINRWSPTR 440
Query: 145 RRSASAQEPRGDGP--RGRSARRRPPGPHL--PGVRELLQLQFKLSRRGHR 191
RRS S R P R RS RRR P G R +L+ + RG R
Sbjct: 441 RRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGR 491
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 33.5 bits (75), Expect = 0.17
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 37 ALGLGLLAAAFAELRLQP-LVLCSQVLQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCR 95
A G LL AAFA R +P VL L+ LL R A + V + C+
Sbjct: 467 AEGARLLQAAFAAARCRPPSVLLISELEALLPARDDGAAAGGALQVPLLACLDGGCGAGA 526
Query: 96 --------SSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRS 147
+SRP+A A+RRR + + P + RG QR A+ + R +
Sbjct: 527 DGVLVVGTTSRPAALDEATRRRFSLRFYVALPDSPARGQILQR-ALAQQGCALSER-ELA 584
Query: 148 ASAQEPRG--DGPRGRSARRRPPGPHLPGVRELL---QLQFKLSRRGHRLAFPHLE 198
A Q +G G G+ ++ G LPG++ L L+ L++ G R + L+
Sbjct: 585 ALVQGTQGFSGGELGQLCQQAAAGAGLPGLQRPLSYKDLEAALAKVGPRASAKELD 640
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 32.7 bits (73), Expect = 0.29
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 94 CRSSRPSARAWASRRRTLISSSCSSPTT----SFRGDSFQRPPRARWAWGVKPRSRRSAS 149
CR P A L+ P + +F G R PRAR+ G +
Sbjct: 72 CRGGGPGASRGVLGLARLLGLWARGPGSCRCGAFAGPGAPRLPRARFPGGPAAAAWAGDE 131
Query: 150 AQEPRGDGPRGRSARRRPPGPHLPGVRELLQLQFKLSRR 188
A P G R RP LP R+LL L + RR
Sbjct: 132 AWRRGPAAPPGDKGRLRPAAAGLPEARKLLGLAYPERRR 170
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 32.7 bits (73), Expect = 0.29
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 83 VSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWG-VK 141
V TC ++ + CRS S A+R R + SP + QRPP A A G K
Sbjct: 2 VPTCGENAAS-CRSG--SHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPK 58
Query: 142 PRSRRSASA-----QEPRGDGPRGRSARRRPPGPHLPG 174
P SR + Q+P GP G + R P H+PG
Sbjct: 59 PVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG 96
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 32.7 bits (73), Expect = 0.29
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 83 VSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWG-VK 141
V TC ++ + CRS S A+R R + SP + QRPP A A G K
Sbjct: 2 VPTCGENAAS-CRSG--SHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPK 58
Query: 142 PRSRRSASA-----QEPRGDGPRGRSARRRPPGPHLPG 174
P SR + Q+P GP G + R P H+PG
Sbjct: 59 PVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG 96
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 32.7 bits (73), Expect = 0.29
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 83 VSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWG-VK 141
V TC ++ + CRS S A+R R + SP + QRPP A A G K
Sbjct: 2 VPTCGENAAS-CRSG--SHFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPK 58
Query: 142 PRSRRSASA-----QEPRGDGPRGRSARRRPPGPHLPG 174
P SR + Q+P GP G + R P H+PG
Sbjct: 59 PVSRGPRAGLREWPQQPWRPGPLGAPLQDRAPSAHVPG 96
>gi|167621456 kinase suppressor of ras 2 [Homo sapiens]
Length = 921
Score = 32.3 bits (72), Expect = 0.38
Identities = 19/66 (28%), Positives = 26/66 (39%)
Query: 116 CSSPTTSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPHLPGV 175
C P S PR R A PR+ + P G P + + +PPG P
Sbjct: 207 CPPPPLESGHRSLPPSPRQRHAVRTPPRTPNIVTTVTPPGTPPMRKKNKLKPPGTPPPSS 266
Query: 176 RELLQL 181
R+L+ L
Sbjct: 267 RKLIHL 272
>gi|110347412 latent transforming growth factor beta binding protein
4 isoform b [Homo sapiens]
Length = 1587
Score = 32.0 bits (71), Expect = 0.49
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 62 LQLLLQRRALRLHAVQKVAVDVSTCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPTT 121
++ LL A R + A S VS + R RS +P A R + + SP+
Sbjct: 4 VKALLFVAAARARRLGGAAASESLAVSEAFCRVRSCQPKKCAGPQRCLNPVPA-VPSPSP 62
Query: 122 SFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPP 168
S R +R W +R + PRG G RG RRRPP
Sbjct: 63 SVR----KRQVSLNWQPLTLQEARALLKRRRPRGPGGRG-LLRRRPP 104
>gi|56243533 stromal cell-derived factor 2-like 1 precursor [Homo
sapiens]
Length = 221
Score = 32.0 bits (71), Expect = 0.49
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 26 LWGRGRGGLHLALGLGLLAAAF-----AELRLQPLVLCSQVLQLLLQRRALRLHA 75
+W GRGG + LGLL A A LV C VL+LL +RLH+
Sbjct: 1 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHS 55
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 31.6 bits (70), Expect = 0.64
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 88 SSSTTRCRSSRPSARAWASRRRTLISSSCS-----SPTTSFRGDSFQRPPRARWAWGVKP 142
S +R R+ P A S R + CS SP S R FQ P P
Sbjct: 761 SPRASRRRAWSPLASPQPSLRSSPGLGYCSPLAPPSPQLSLRTGPFQPP--------FLP 812
Query: 143 RSRRSASAQEPRGDGPRGRSARRRPPGPHLPG 174
+RR S QE PR + R PPG LPG
Sbjct: 813 PARRPRSLQE--SPAPRRAAGRLGPPGSPLPG 842
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 0.64
Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 93 RCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRSASAQE 152
R RS P+ R SR RT S T + RG S R P R + P RRS S
Sbjct: 583 RSRSRTPARRR--SRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSP 640
Query: 153 PRGDG--------PRGRSARRRP 167
R G RGRS R P
Sbjct: 641 ARRSGRSRSRTPARRGRSRSRTP 663
Score = 31.2 bits (69), Expect = 0.84
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 88 SSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRS 147
S +T R SR + R + R S T + RG S R P R + P RRS
Sbjct: 545 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 604
Query: 148 ASAQEPRGDGPRGRSARRRP 167
S R RGRS R P
Sbjct: 605 RSRTPAR----RGRSRSRTP 620
Score = 30.4 bits (67), Expect = 1.4
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 88 SSSTTRCRSSRPSARAWASRRRTLIS-SSCSSPTTSFRGDSFQRPPRARWAWGVKP---- 142
S + R RSSR S R + S S+ SSP T R PPR R + V
Sbjct: 1682 SRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSR-----TPPRHRRSPSVSSPEPA 1736
Query: 143 ------RSRRSASAQEPRGDGPRGRSARRRPPG 169
R RRSAS+ + RGRS +P G
Sbjct: 1737 EKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRG 1769
Score = 29.6 bits (65), Expect = 2.5
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 84 STCVSSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRP-----PRARWAW 138
S+ SSS++ SS S+ + +S + SSS SS ++S S +P P+
Sbjct: 2607 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPK 2666
Query: 139 GVKPRSRRSASAQEPRGDGPRGRS-----ARRRPPGPHLPGVRELLQLQFKLSRRGHR 191
P RRS S ++P RS RR P P + + SRRG R
Sbjct: 2667 KPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQR 2724
Score = 29.3 bits (64), Expect = 3.2
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 93 RCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRSASAQE 152
R R+ P R SR S S T + RG S R P R + +RRS ++
Sbjct: 624 RSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRS 683
Query: 153 PRGDGPRGRSARRRP 167
R RGRS R P
Sbjct: 684 -RTPARRGRSRSRTP 697
Score = 28.1 bits (61), Expect = 7.1
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 89 SSTTRCRS-SRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPP---RARWAWGVKPRS 144
S TR RS SR AR SR RT S T + R + P R+R + RS
Sbjct: 566 SPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS 625
Query: 145 R-RSASAQEPRGDGPRGRSARRRPPGP 170
R RS + R P RS R R P
Sbjct: 626 RTRSPVRRRSRSRSPARRSGRSRSRTP 652
Score = 28.1 bits (61), Expect = 7.1
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 96 SSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPRG 155
S P+ ++ +SRRR SS + TTS RG S P+ R + RSRR + R
Sbjct: 1732 SPEPAEKSRSSRRRRSASSP-RTKTTSRRGRS--PSPKPRGLQRSRSRSRREKTRTTRRR 1788
Query: 156 D--GPRGRSARRR 166
D G ++RRR
Sbjct: 1789 DRSGSSQSTSRRR 1801
Score = 27.7 bits (60), Expect = 9.3
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 87 VSSSTTRCRSSRPSARAWASRRRTLI----SSSCSSPTTSFRGDSFQRPPRARWAWGVKP 142
+S +R R+S S R SR RT + S S +SP + R S P R + P
Sbjct: 1883 ISRRRSRSRTSPVSRRR--SRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTP 1940
Query: 143 RSRRSASAQEPRGDGPRGRSARRRPP 168
+RR + ++ P R RS R PP
Sbjct: 1941 TTRRRSRSRTP--PVTRRRSRSRTPP 1964
Score = 27.7 bits (60), Expect = 9.3
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 95 RSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPR 154
R RP A R+R SSS SS ++S S + + S S+S+ P
Sbjct: 2591 REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Query: 155 GDGPRGRSARRRPPGPHLP 173
P G A +P P P
Sbjct: 2651 PAKP-GPQALPKPASPKKP 2668
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.84
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 129 QRPPRARWAWGVKPRSRRSASAQEPRGDGPRGRSARRRPPGPH 171
+RPPRAR P S + R GP G+S+ R PGPH
Sbjct: 460 ERPPRAR------PASTSPSPGAHGRRGGPEGKSS-SRSPGPH 495
Score = 28.1 bits (61), Expect = 7.1
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 88 SSSTTRCRSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRS 147
SS + R R +A R S S+P++ RG RA G + R RR
Sbjct: 339 SSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG------RAAGGAGRRRRRRRR 392
Query: 148 ASAQEPRGDGPRGRSARRRPPGPHLPGVREL 178
PR R RR P P R L
Sbjct: 393 RRRSRSSASAPRRRGRRRPRPAPPRGSSRSL 423
>gi|18129690 T-box 4 [Homo sapiens]
Length = 545
Score = 30.8 bits (68), Expect = 1.1
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 146 RSASAQEPRGDG-PRGRSARRRPPGPHLPGVRELLQLQ-FKLSR 187
R SA PR G P+G R+PP PHL E L Q F LSR
Sbjct: 485 RGPSASFPRERGLPQG--CERKPPSPHLNAANEFLYSQTFSLSR 526
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.8 bits (68), Expect = 1.1
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 96 SSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVKPRSRRSASAQEPR- 154
+SRPS A L+SS +SP RG SF PR R A PR R + P+
Sbjct: 20 ASRPSG---AESYSELLSSRPASP----RGASFSAEPRPR-ASLPPPRPARPSHLLWPKR 71
Query: 155 -----GDGPRGRSARRRPPGPHLPGVRELLQL 181
G P R A PPG P R +L
Sbjct: 72 LPGRPGRAPGDRRAALPPPGTRSPFARAAAEL 103
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 95 RSSRPSARAWASRRRTLISSSCSSPTTSFRGDSFQRPPRARWAWGVK-----PRSRRSAS 149
+ S+P+ R A P+T+ G PPRA G K P+ R+
Sbjct: 3801 QQSQPTTRGSAPAASQPAGKPQPGPSTA-TGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQ 3859
Query: 150 AQEPRGDGPRGRSARRRPPG 169
AQ G GP G A RP G
Sbjct: 3860 AQPAPGPGPAGVKAGARPGG 3879
>gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 132 PRARWAWGVKP-RSRRSASAQEPRGDGPRGRSARRRPPGP 170
P AR G +P + R+ +PRG G RG RRR P P
Sbjct: 400 PEARAEAGEQPGTAERALLRDQPRGRGQRGARQRRRTPRP 439
>gi|14149724 mesoderm posterior 1 [Homo sapiens]
Length = 268
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 124 RGDSFQRPPRARWAWGVKPRSRRSASAQEPRGDG--------PRGRSARRRPPGPHLPG- 174
RG RA +WG P + +A EPR P G++ PP P LPG
Sbjct: 187 RGLGLVSAVRAGASWGSPPACPGARAAPEPRDPPALFAEAACPEGQAMEPSPPSPLLPGD 246
Query: 175 VRELLQLQFKLS 186
V LL+ LS
Sbjct: 247 VLALLETWMPLS 258
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 88 SSSTTRCRSSRPSARAWASRRRTLISSS-----CSSPTTSFRGDSFQRPPRARWAWGVKP 142
S S++R + RP + + RR S SP + RG PPR R + P
Sbjct: 46 SGSSSRTPARRPRSPSGHRGRRASPSPPRGRRVSPSPPRARRGSP--SPPRGRRLFPPGP 103
Query: 143 RSRRSAS--------AQEPRGDGPRGRSARRRPPG 169
R +S A++ RGD P +RRR PG
Sbjct: 104 AGFRGSSRGESRADYARDGRGDHPGDSGSRRRSPG 138
>gi|46409340 ankyrin repeat domain 13 family, member D [Homo
sapiens]
Length = 518
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 152 EPRGDGPRGRSARRRPPGPHLPGVRELLQLQFKLSRR----GHRLAFPHLERLQLLLQL 206
EPRG G S R PP P P E L+L +LS R R E LQ +LQL
Sbjct: 459 EPRGPG----SPPRTPPAPGPPSFEEQLRLALELSSREQEERERRGQQEEEDLQRILQL 513
>gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1B isoform a [Homo sapiens]
Length = 629
Score = 30.4 bits (67), Expect = 1.4
Identities = 36/112 (32%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 83 VSTCVSSSTTRCRSSRPSARAWASRRRTLISSS--CSS---PTTSFRGDSFQRPPR---A 134
+ TC SSST SS + +S RT S+ C P T +S Q PP
Sbjct: 455 LDTCPSSSTASSISSSGGSSGSSSDNRTYRYSNRYCGGPGPPITDCEMNSPQVPPSQPLR 514
Query: 135 RWAWGVKPRS--RRSASAQEPRGDGPRGRSARR---RPPGPHLPGVRELLQL 181
WA G P + ASA G G + R RPP P P EL+ +
Sbjct: 515 PWAGGDVPHKTHQAPASASSLPGTGAQLPPQPRYLGRPPSPTSPPPPELMDV 566
>gi|5922001 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1B isoform c [Homo sapiens]
Length = 601
Score = 30.4 bits (67), Expect = 1.4
Identities = 36/112 (32%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 83 VSTCVSSSTTRCRSSRPSARAWASRRRTLISSS--CSS---PTTSFRGDSFQRPPR---A 134
+ TC SSST SS + +S RT S+ C P T +S Q PP
Sbjct: 427 LDTCPSSSTASSISSSGGSSGSSSDNRTYRYSNRYCGGPGPPITDCEMNSPQVPPSQPLR 486
Query: 135 RWAWGVKPRS--RRSASAQEPRGDGPRGRSARR---RPPGPHLPGVRELLQL 181
WA G P + ASA G G + R RPP P P EL+ +
Sbjct: 487 PWAGGDVPHKTHQAPASASSLPGTGAQLPPQPRYLGRPPSPTSPPPPELMDV 538
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,620,415
Number of Sequences: 37866
Number of extensions: 479541
Number of successful extensions: 3715
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 3538
Number of HSP's gapped (non-prelim): 269
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.