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Search of human proteins with 239746114
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo
sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757093 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|239751599 PREDICTED: hypothetical protein XP_002347926 [Homo ... 404 e-113
gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo ... 404 e-113
gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens] 39 0.004
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 36 0.023
gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo s... 36 0.023
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.039
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.039
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 34 0.067
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 34 0.067
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 34 0.087
gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo ... 33 0.11
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 33 0.11
gi|22748653 arrestin domain containing 1 [Homo sapiens] 33 0.11
gi|24497517 homeobox A5 [Homo sapiens] 33 0.15
gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo ... 33 0.15
gi|116089331 human immunodeficiency virus type I enhancer bindin... 33 0.15
gi|38202224 discs large-associated protein 2 [Homo sapiens] 33 0.19
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 33 0.19
gi|238550198 synaptotagmin III [Homo sapiens] 32 0.25
gi|238550196 synaptotagmin III [Homo sapiens] 32 0.25
gi|14150054 synaptotagmin III [Homo sapiens] 32 0.25
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 32 0.25
gi|239735519 SET binding factor 1 [Homo sapiens] 32 0.33
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 32 0.33
gi|24308069 zinc finger protein 521 [Homo sapiens] 32 0.33
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 32 0.33
gi|154146231 DMRT-like family A2 [Homo sapiens] 32 0.33
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 32 0.33
>gi|239757093 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 404 bits (1039), Expect = e-113
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV
Sbjct: 1 MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
Query: 61 QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA
Sbjct: 61 QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
Query: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG
Sbjct: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
Query: 181 KHGMALCPLEHD 192
KHGMALCPLEHD
Sbjct: 181 KHGMALCPLEHD 192
>gi|239751599 PREDICTED: hypothetical protein XP_002347926 [Homo
sapiens]
Length = 192
Score = 404 bits (1039), Expect = e-113
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV
Sbjct: 1 MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
Query: 61 QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA
Sbjct: 61 QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
Query: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG
Sbjct: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
Query: 181 KHGMALCPLEHD 192
KHGMALCPLEHD
Sbjct: 181 KHGMALCPLEHD 192
>gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo
sapiens]
Length = 192
Score = 404 bits (1039), Expect = e-113
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV
Sbjct: 1 MTYASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRV 60
Query: 61 QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA
Sbjct: 61 QLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQA 120
Query: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG
Sbjct: 121 LLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMG 180
Query: 181 KHGMALCPLEHD 192
KHGMALCPLEHD
Sbjct: 181 KHGMALCPLEHD 192
>gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens]
Length = 988
Score = 38.5 bits (88), Expect = 0.004
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 23 RGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP---- 78
+ LAG GLP APPG+ +D L S + +LP L + +T +P P
Sbjct: 689 KARLAGEGLPGAPPGRPESFAFVDEDEDEDL---SGKSELPPSLALHPSTTAPLSPEEPN 745
Query: 79 -PLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFH 112
PLP KQ PE PAG+ + S H
Sbjct: 746 GPLPGHKQQ-------PEAPEPAGQRPSIFQSLLH 773
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 35.8 bits (81), Expect = 0.023
Identities = 54/178 (30%), Positives = 65/178 (36%), Gaps = 31/178 (17%)
Query: 3 YASPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQL 62
Y P PQG+ GLG A G PL+PP QP + +A R +
Sbjct: 964 YYGPIEPQGLGL--GLGEARAAPRGAAGRPLSPPA--AQPPQ----KPPPSYFAIVRDKE 1015
Query: 63 PCCLTIAATTESPSPPPLPTEKQSH------RVAGSPPEVAGPAGRHRVMPGSCFHVSCS 116
P A PSPP P + R+A PA R P S
Sbjct: 1016 PAEPPAGAFPGFPSPPAPPAAAATAVGPPLCRLAFEDESPPAPARWPRSDPES------- 1068
Query: 117 KHQALLGNTPSASGLGGTCPAS----AWPSVRVKGPNPGPLEELARTAFPTHSETSET 170
Q LLG P A G GGT A A P P P P +L + P+ SE SE+
Sbjct: 1069 --QPLLG--PGAGGAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPS--PSDSEDSES 1120
>gi|21536476 diphthamide biosynthesis protein 2 isoform a [Homo
sapiens]
Length = 489
Score = 35.8 bits (81), Expect = 0.023
Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 60 VQLPCCLTIAATTESPS---PPPLPTEKQSHRVAGSPPEVAGPAGRHR--VMPGSCFHVS 114
V L C L A S S P P E ++ PP P H ++PGS FHV+
Sbjct: 337 VLLACPLGALAPQLSGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYADLLPGSPFHVA 396
Query: 115 CSKHQALLGNTPSASGLGGTC-PASAWPSVRVKGP---NPGPLEELARTAFPTHSETSET 170
++ L TP S + G P AW S G P P ELA ++ P S S
Sbjct: 397 LPPPESELWETPDVSLITGDLRPPPAWKSSNDHGSLALTPRPQLELAESS-PAASFLSSR 455
Query: 171 AQMSINTRMGK 181
+ + R+G+
Sbjct: 456 SWQGLEPRLGQ 466
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.0 bits (79), Expect = 0.039
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 22/110 (20%)
Query: 12 IAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAAT 71
+A + A +RG + G L L+P + R+P D K ++W + + AA
Sbjct: 631 VARREARPARARGEIGG--LSLSPSPERRKPPPPDPATKPKVSWIHGK------HSAAAA 682
Query: 72 TESPSPPP--------------LPTEKQSHRVAGSPPEVAGPAGRHRVMP 107
+PSPPP P++K +H V P P R +P
Sbjct: 683 GRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLP 732
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 35.0 bits (79), Expect = 0.039
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 22/110 (20%)
Query: 12 IAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAAT 71
+A + A +RG + G L L+P + R+P D K ++W + + AA
Sbjct: 626 VARREARPARARGEIGG--LSLSPSPERRKPPPPDPATKPKVSWIHGK------HSAAAA 677
Query: 72 TESPSPPP--------------LPTEKQSHRVAGSPPEVAGPAGRHRVMP 107
+PSPPP P++K +H V P P R +P
Sbjct: 678 GRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLP 727
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 34.3 bits (77), Expect = 0.067
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 77 PPPLPTEKQS--HRVAGSPPEVA--GPAGRH--RVMPGSCFH--VSCSKHQA---LLGNT 125
PP L +E+ S HR A + +A GPA + PG F + + H A L+G++
Sbjct: 9 PPHLLSERGSLGHRSAAAAARLAPAGPAAQPPAHFQPGKYFPSPLPMASHTASSRLMGSS 68
Query: 126 PSASGLGG--TCPASAWPSVRVKGPNPGPLEELARTAFPTHSE 166
P++S +G T + S GP+ P E+ R + PT S+
Sbjct: 69 PASSFMGSFLTSSLGSAASTHPSGPSSSPPEQAYRGSHPTTSQ 111
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 34.3 bits (77), Expect = 0.067
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 25/170 (14%)
Query: 7 CPPQGIAATKGLGAASRGALAGTGLPLAPP----GKNRQPIHLDHLRKASLTWASPRVQL 62
CP G+ ++ A+ + GLP APP + P+ + L + +
Sbjct: 1018 CPESGLGQSQAPAASRK-----QGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSV 1072
Query: 63 PCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALL 122
P +T T + P P+P R AG+P GPAG + L
Sbjct: 1073 PLPVTWVLTAQGLLPVPVPAVVSLPRPAGTP----GPAGLLATL------------LPPL 1116
Query: 123 GNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
T +A G +S+W P P A PTH+ + A+
Sbjct: 1117 TETRAAQGPRAPALSSSWQPPANMNREPEPSCRTDTPAPPTHALSQSPAE 1166
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 33.9 bits (76), Expect = 0.087
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 5 SPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPC 64
S CP + G R A GT LP P K ++ + + + ++
Sbjct: 521 SECPEMPLPLIPG----ERQAGDGTSLPETPNPKMMSAVYAELESRLNSSFKGK------ 570
Query: 65 CLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAG-RHRVMPGSCFHVSCSKHQALLG 123
+ ++S + PP P S V P ++G + R++P C+H CS A
Sbjct: 571 ---MGTVSKSRASPPGP----SPAVTTGPRTLSGVSWPSERLLPSPCYHPLCSGGLA--- 620
Query: 124 NTPSASGLGGTCPASAWPSVRVKGPNPGP 152
+PS+S + P ++ S R P PGP
Sbjct: 621 -SPSSS---ESHPYASLDSSRAPSPQPGP 645
>gi|239745038 PREDICTED: hypothetical protein XP_002343338 [Homo
sapiens]
Length = 244
Score = 33.5 bits (75), Expect = 0.11
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 74 SPSPPPLPTEKQSHR--VAGSP--PEVAGPAGRHRVMPGSCFHVS-CSKHQALLGNTPSA 128
SP+PP PT +QS R VA +P P P + R +P + + C L P+
Sbjct: 102 SPAPPGPPTSRQSPRISVAAAPVLPAAPRPPTQRRCVPVAQRGLPLCGTGLGLETRRPAR 161
Query: 129 SGLGGTCPASAWPSVRVKGPNP 150
S LG T +P K P P
Sbjct: 162 SCLGETAAPFRFPRCECKPPTP 183
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
Length = 1747
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 5 SPCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWA-SPRVQLP 63
SP P + +GLGA + GA G L PP L+ +SL+ P+
Sbjct: 1593 SPVKPASLERVEGLGAGAGGA--GRPFGLTPP---------TILKSSSLSIPHEPKEVRF 1641
Query: 64 CCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGP 99
+++A + SPSP PLP+ +G P GP
Sbjct: 1642 VVRSVSARSRSPSPSPLPSP-----ASGPGPGAPGP 1672
>gi|22748653 arrestin domain containing 1 [Homo sapiens]
Length = 433
Score = 33.5 bits (75), Expect = 0.11
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 43 IHLDHLRKASLTWASPRVQLPCCLTIAATTESP-SPPP---LPTEKQSHRVAGSPPEV-- 96
IH+D+ + SL V LP + A +P SP P LP V +PP+
Sbjct: 258 IHIDYYLQVSLKAPEATVTLPVFIGNIAVNHAPVSPRPGLGLPPGAPPLVVPSAPPQEEA 317
Query: 97 ---AGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPS 142
A G H + P S S+ Q LL S G CP P+
Sbjct: 318 EAEAAAGGPHFLDPVFLSTKSHSQRQPLLATLSSVPGAPEPCPQDGSPA 366
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 33.1 bits (74), Expect = 0.15
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 51 ASLTWASPRVQLPCCLTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSC 110
AS A PR P A +T SP P PLP VA SP + G++ + S
Sbjct: 77 ASAAPAEPRYSQP-----ATSTHSPQPDPLPCS----AVAPSPGSDSHHGGKNSLSNSSG 127
Query: 111 FHVSC-SKHQALLGNTPSASGLGGTCPASAWPSVRVKGPNPGP 152
S H + +ASG PAS+ + P+P P
Sbjct: 128 ASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAP 170
>gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo
sapiens]
Length = 164
Score = 33.1 bits (74), Expect = 0.15
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 73 ESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLG 132
E+P P T H +G PPE+ P GR + G CF + H+ L+ P
Sbjct: 35 ETPEEPTQQTSILDHMCSG-PPEL--PWGR-TLGSGQCFPNNSPMHRCLVDILPLT---- 86
Query: 133 GTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
+W S + P P P + +T TH E+S A+
Sbjct: 87 ----LLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWAK 122
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 33.1 bits (74), Expect = 0.15
Identities = 53/195 (27%), Positives = 69/195 (35%), Gaps = 48/195 (24%)
Query: 34 APPGKNRQPIHLDHLR-KASLTWASPRVQLP----CCL------------TIAATTESPS 76
+PPG +H+D R +L SPR+QL C L + TT+
Sbjct: 2009 SPPG-----LHVDPGRGMGALPCGSPRLQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGL 2063
Query: 77 PPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSA-------- 128
P PT + S A SPP A P PGS S +H LG P
Sbjct: 2064 PRYSPTRRWSPGQAESPPRSAPPGKWALAGPGS---PSAGEHGPGLGLDPRVLFPPAPLP 2120
Query: 129 ----SGLGGTCPASAWPSVRVKGP--NPGPLEELARTAFPT----HSETSETAQMSINTR 178
S TC AS W + P +PGP L+ F H + +I +
Sbjct: 2121 HKLLSRSPETC-ASPWQKAESRSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIFSH 2179
Query: 179 MGKHGMAL----CPL 189
+ H L CPL
Sbjct: 2180 LPLHSQHLTRAPCPL 2194
>gi|38202224 discs large-associated protein 2 [Homo sapiens]
Length = 975
Score = 32.7 bits (73), Expect = 0.19
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 78 PPLPTEKQSHRVAGSPPEVAGPA-----GRHRVMPGSCFHVSCSKHQALLGNTPSAS 129
PP E H PP + PA GRHR P S H C +LG+ S+S
Sbjct: 23 PPEDCEHLHHGPDARPPYLLSPADSCPGGRHRCSPRSSVHSECVMMPVVLGDHVSSS 79
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 32.7 bits (73), Expect = 0.19
Identities = 46/185 (24%), Positives = 63/185 (34%), Gaps = 30/185 (16%)
Query: 6 PCPPQGIAATKGLGAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCC 65
P PP+ ++ + A RG+LA LP+APP + P LD L A+ R P
Sbjct: 730 PHPPEDDSSLR----AERGSLAD--LPMAPPA-SAPPEFLDPLMGAAAPQYPGRGPPPA- 781
Query: 66 LTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNT 125
P PPP P + PP G PG S ++ +
Sbjct: 782 --------PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGP--KPGDSGYETETPFS 831
Query: 126 PSASGLGGTC------------PASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQM 173
P + GG P P P+PGPL PT T Q+
Sbjct: 832 PEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLPLPGPREKPTFVVQVSTEQL 891
Query: 174 SINTR 178
++ R
Sbjct: 892 LMSLR 896
>gi|238550198 synaptotagmin III [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.25
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 27 AGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP-------- 78
AG+GL L PP P H + SL + LP LT T P P
Sbjct: 194 AGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPAL 253
Query: 79 --PLPTEKQSHRVAGS-PPEV---AGPAGR 102
PLP ++ ++ G PE+ GP GR
Sbjct: 254 PLPLPGGEEKAKLIGQIKPELYQGTGPGGR 283
>gi|238550196 synaptotagmin III [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.25
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 27 AGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP-------- 78
AG+GL L PP P H + SL + LP LT T P P
Sbjct: 194 AGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPAL 253
Query: 79 --PLPTEKQSHRVAGS-PPEV---AGPAGR 102
PLP ++ ++ G PE+ GP GR
Sbjct: 254 PLPLPGGEEKAKLIGQIKPELYQGTGPGGR 283
>gi|14150054 synaptotagmin III [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.25
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 27 AGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP-------- 78
AG+GL L PP P H + SL + LP LT T P P
Sbjct: 194 AGSGLLLLPPSGGGLPSAQSHQQVTSLAPTTRYPALPRPLTQQTLTSQPDPSSEERPPAL 253
Query: 79 --PLPTEKQSHRVAGS-PPEV---AGPAGR 102
PLP ++ ++ G PE+ GP GR
Sbjct: 254 PLPLPGGEEKAKLIGQIKPELYQGTGPGGR 283
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 32.3 bits (72), Expect = 0.25
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 16/143 (11%)
Query: 30 GLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPPPLPTEKQSHRV 89
GLP P + P H A + + ++ P L A +P+ P PT+
Sbjct: 627 GLPGVPVTTDAMPRTNFHSSVAFM-FRKFKILRPAPLPAAVVPSTPTSAPAPTQP----- 680
Query: 90 AGSPPEVAGPAG----RHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPSVRV 145
+P +GP G + + +CF ++ A+ +P+ + PA A
Sbjct: 681 --APTPTSGPIGLRILAQQPLSVTCFSLALPSPPAVAVASPAPAPAPSPAPARAQAPASA 738
Query: 146 KGPNPGPLEELARTAFPTHSETS 168
+ P P P A A P + TS
Sbjct: 739 RDPAPAP----APVAGPAPASTS 757
Score = 30.4 bits (67), Expect = 0.97
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 52 SLTWASPRVQLPCCLTIAATTESPSPPPLPTEKQ----SHRVAGSPPEVAGPAGRHRVMP 107
S+T S + P + +A+ +P+P P P Q + A +P VAGPA P
Sbjct: 700 SVTCFSLALPSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAP 759
Query: 108 G 108
G
Sbjct: 760 G 760
>gi|239735519 SET binding factor 1 [Homo sapiens]
Length = 1893
Score = 32.0 bits (71), Expect = 0.33
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 80 LPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHV-----SCSKHQALLGNTPSASGLGGT 134
L EK V S P A +GR+ + S H+ S L N +AS T
Sbjct: 1239 LEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHMGSHVPSPRARVTTLSNPMAASASRRT 1298
Query: 135 CPASAWPSVRVKGPNPG 151
P W SVR G + G
Sbjct: 1299 APRGKWGSVRTSGRSSG 1315
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 32.0 bits (71), Expect = 0.33
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 98 GPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELA 157
G GR R + + S+ A T + GL GT PA AWP + + E
Sbjct: 147 GAQGRRRRACRTSLRLGASRRLAWSPRT--SPGLRGTSPAQAWPCLLQASESFSAFREPQ 204
Query: 158 RTAFPTHSETSET 170
R FP ++ E+
Sbjct: 205 RGTFPANAAAKES 217
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 32.0 bits (71), Expect = 0.33
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 98 GPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPASAWPSVRVKGPNPGPLEELA 157
G GR R + + S+ A T + GL GT PA AWP + + E
Sbjct: 147 GAQGRRRRACRTSLRLGASRRLAWSPRT--SPGLRGTSPAQAWPCLLQASESFSAFREPQ 204
Query: 158 RTAFPTHSETSET 170
R FP ++ E+
Sbjct: 205 RGTFPANAAAKES 217
>gi|24308069 zinc finger protein 521 [Homo sapiens]
Length = 1311
Score = 32.0 bits (71), Expect = 0.33
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 66 LTIAATTESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSK 117
L++ ++T + PP+P + R A P++ GP+ + + SC + C+K
Sbjct: 363 LSVDSSTMVEAAPPIPKSRGRKRAAQQTPDMTGPSSKQAKVTYSCIY--CNK 412
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 32.0 bits (71), Expect = 0.33
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 77 PPPLPTEKQSHRVA-GSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTC 135
PPP+P +K R+A G P GP+G C V S T
Sbjct: 984 PPPVPAKKSRERLANGLHPVPMGPSGALPSPDAPCLPVK------------RGSPASPTS 1031
Query: 136 PASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQMSINTRMGKHGMALCP 188
P+ P++ P PL A + P+ +++ NT + +HG+ L P
Sbjct: 1032 PSDCPPALA-----PRPLSGQAPGSPPSTRPPPWLSELPENTSLQEHGVKLGP 1079
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 32.0 bits (71), Expect = 0.33
Identities = 44/153 (28%), Positives = 57/153 (37%), Gaps = 26/153 (16%)
Query: 19 GAASRGALAGTGLPLAPPGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPSPP 78
G GA AGTG A G + L+K L P L A SP PP
Sbjct: 166 GGPGAGAPAGTGGGAAGAGGSEAK-----LQKFDL--------FPKTLLQAGRPGSPLPP 212
Query: 79 PLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLGGTCPAS 138
P+ + S A S P + P V PGS + + ++ GG+CP S
Sbjct: 213 PV--KPLSPDGADSGPGTSSP----EVRPGSGSENGDGESFSGSPLARASKEAGGSCPGS 266
Query: 139 AWPSVRVKGPNPGPLEELARTAFPTHSETSETA 171
A GP G E+ +A P SE+ A
Sbjct: 267 A-------GPGGGGEEDSPGSASPLGSESGSEA 292
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 32.0 bits (71), Expect = 0.33
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 29 TGLPLAP-PGKNRQPIHLDHLRKASLTWASPRVQLPCCLTIAATTESPS--PPPLPTEKQ 85
T +P P P ++ P HL S+ P L+ +T PS PPPL Q
Sbjct: 380 TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQ 439
Query: 86 SHRVAGSPPEVAG---------------PAGRHRVMPGSCFHVSCSKHQALLGNTPSASG 130
S + SP + G P G H+V P F ++H + G P +
Sbjct: 440 SQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPF----AQHPFVPGGPPPIT- 494
Query: 131 LGGTCPASAWP 141
TCP+++ P
Sbjct: 495 -PPTCPSTSTP 504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,473,654
Number of Sequences: 37866
Number of extensions: 614036
Number of successful extensions: 2941
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 2743
Number of HSP's gapped (non-prelim): 427
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.