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Search of human proteins with 239746090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746090 PREDICTED: hypothetical protein XP_002343655 [Homo
sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757068 PREDICTED: hypothetical protein [Homo sapiens] 657 0.0
gi|239751578 PREDICTED: hypothetical protein [Homo sapiens] 657 0.0
gi|239746090 PREDICTED: hypothetical protein XP_002343655 [Homo ... 657 0.0
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 39 0.005
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 39 0.006
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 39 0.008
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 39 0.008
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 39 0.008
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 37 0.029
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens] 35 0.066
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 35 0.066
gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform... 35 0.11
gi|203098629 acyl-Coenzyme A binding domain containing 5 isoform... 35 0.11
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 34 0.15
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 34 0.15
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 34 0.15
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 34 0.15
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 34 0.15
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 34 0.15
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 34 0.15
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 33 0.25
gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens] 33 0.33
gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens] 33 0.33
gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens] 33 0.33
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.33
gi|117320550 hypothetical protein LOC400566 [Homo sapiens] 33 0.33
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 33 0.42
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 33 0.42
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 33 0.42
>gi|239757068 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 657 bits (1696), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV 60
MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV
Sbjct: 1 MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV 60
Query: 61 HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV 120
HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV
Sbjct: 61 HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV 120
Query: 121 AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG 180
AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG
Sbjct: 121 AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG 180
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ
Sbjct: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI 300
RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI
Sbjct: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI 300
Query: 301 PFGSLFHEARYY 312
PFGSLFHEARYY
Sbjct: 301 PFGSLFHEARYY 312
>gi|239751578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 657 bits (1696), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV 60
MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV
Sbjct: 1 MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV 60
Query: 61 HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV 120
HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV
Sbjct: 61 HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV 120
Query: 121 AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG 180
AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG
Sbjct: 121 AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG 180
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ
Sbjct: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI 300
RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI
Sbjct: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI 300
Query: 301 PFGSLFHEARYY 312
PFGSLFHEARYY
Sbjct: 301 PFGSLFHEARYY 312
>gi|239746090 PREDICTED: hypothetical protein XP_002343655 [Homo
sapiens]
Length = 312
Score = 657 bits (1696), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV 60
MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV
Sbjct: 1 MQAPTRAKLSRVFRDSQEKSNRGRMLGPYSSTKASCTSVILDPGVQVPVQVLSHPQGDVV 60
Query: 61 HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV 120
HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV
Sbjct: 61 HQGRHLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEV 120
Query: 121 AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG 180
AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG
Sbjct: 121 AAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLG 180
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ
Sbjct: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI 300
RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI
Sbjct: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCILGRGGVFNHAEHLILVFPPWHEMQEIFIPI 300
Query: 301 PFGSLFHEARYY 312
PFGSLFHEARYY
Sbjct: 301 PFGSLFHEARYY 312
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/131 (32%), Positives = 48/131 (36%), Gaps = 12/131 (9%)
Query: 65 HLPVDALHTHDPTELKEGHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEVAAVA 124
+L DALH LK G V PVP + ASP G GR G E V
Sbjct: 142 YLQDDALHL---LVLKTGLG---VDPVPAGV-----DASPGGAGRDPGPPGGAPEKRRVG 190
Query: 125 AGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDA 184
E + W R G GG L+R+ G R G W R G +
Sbjct: 191 TAERRHTICSLDWRMGWGGGAAEARAGGGGGGSLERQRAGARASG-SWERRQTFSGSWER 249
Query: 185 RCGGGPRGRGA 195
R GGG G GA
Sbjct: 250 RHGGGGGGGGA 260
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 38.9 bits (89), Expect = 0.006
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 146 RRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRGAHISRIPLVAP 205
+R G GG G G G G G G G + CGG P + SRIP P
Sbjct: 2287 QRNHSGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIP--QP 2344
Query: 206 LRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQRHLSPQLPPHG 251
+R H+ PV+V + S + + + S G P LPP G
Sbjct: 2345 VR--------HHPPVLVSSAASSQAEADKMS--GTSTPGPSLPPPG 2380
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 133 AEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRG 192
A G R R E RP G G RG R PG R+ G G GR P R GG RG
Sbjct: 59 AAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRG-RGRAP------ERVGGRGRG 111
Query: 193 RGAHISR 199
RG R
Sbjct: 112 RGTAAPR 118
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 38.5 bits (88), Expect = 0.008
Identities = 47/163 (28%), Positives = 59/163 (36%), Gaps = 35/163 (21%)
Query: 100 GKASPRGEGRQVQLAGHLGEVAAVAAGEVVAGLAE------GQVDHRWHRAER------R 147
G+++ G G A G + A V+G+ G+ RW +A R R
Sbjct: 17 GESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCGR 76
Query: 148 PRG-GAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRGAHISRIPLVAPL 206
RG G G RG R R P G GLGG+ CGGG G G R P+ P
Sbjct: 77 GRGRGRGRGRGRGRGRGRGRPPSGG-----SGLGGDGGGCGGGGSGGGGAPRREPVPFPS 131
Query: 207 RQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQRHLSPQLPP 249
P R P R + G+R P LPP
Sbjct: 132 GS---------------AGPGPRGP--RATESGKRMDCPALPP 157
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 38.5 bits (88), Expect = 0.008
Identities = 47/163 (28%), Positives = 59/163 (36%), Gaps = 35/163 (21%)
Query: 100 GKASPRGEGRQVQLAGHLGEVAAVAAGEVVAGLAE------GQVDHRWHRAER------R 147
G+++ G G A G + A V+G+ G+ RW +A R R
Sbjct: 17 GESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVCGR 76
Query: 148 PRG-GAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRGAHISRIPLVAPL 206
RG G G RG R R P G GLGG+ CGGG G G R P+ P
Sbjct: 77 GRGRGRGRGRGRGRGRGRGRPPSGG-----SGLGGDGGGCGGGGSGGGGAPRREPVPFPS 131
Query: 207 RQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQRHLSPQLPP 249
P R P R + G+R P LPP
Sbjct: 132 GS---------------AGPGPRGP--RATESGKRMDCPALPP 157
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 36.6 bits (83), Expect = 0.029
Identities = 43/125 (34%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 85 PP--PVHPVPEELLHHRGKASPRG---EGRQVQLAGHLGEVAAV----AAGEVVAGLAEG 135
PP P P P + RG P G E + G+ GEV A G A G
Sbjct: 238 PPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPG 297
Query: 136 QVDHRWHRAERRPRG--GAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCG--GGPR 191
HR H+ P+G GA GS+G GP + G +G G+ GE R G G P
Sbjct: 298 LKGHRGHKGLEGPKGEVGAPGSKG--EAGPTGPMGAMGPLG-PRGMPGERGRLGPQGAPG 354
Query: 192 GRGAH 196
RGAH
Sbjct: 355 QRGAH 359
>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 35.4 bits (80), Expect = 0.066
Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 102 ASPRGEGRQVQLAGHLGEVAAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAG-GSRGLQR 160
ASP G G G G + A+ V A G + R RA GG G GS+ L R
Sbjct: 16 ASPPGIGGPKSQWGKSGWFSIAASWRVPPPPAMGVLKARGGRAW----GGRGAGSQSLPR 71
Query: 161 RGPGDRVPGC--------GWMGRVPGL--GGEDARCGGGPRGRG 194
G R G GW+ VP L GG +C GGP+ +G
Sbjct: 72 GGASARCDGGPKSQGGKRGWLS-VPSLPRGGASPQCDGGPKSQG 114
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 35.4 bits (80), Expect = 0.066
Identities = 41/109 (37%), Positives = 49/109 (44%), Gaps = 20/109 (18%)
Query: 99 RGKASPRGEGRQVQL----AGHL--GEVAAVAA-----GEVVAGLAEGQVDHRWH----- 142
RG+A RG L AG L G VAA AA G VA L G+ HR
Sbjct: 554 RGRAPGRGLFHVALLMRQEAGQLREGAVAAAAAERLPAGSPVAVLVAGEPSHRPEGLAAG 613
Query: 143 RAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPR 191
+ + RGG GG RGL++RG + G G +G L G R G G R
Sbjct: 614 QTGKARRGGGGGRRGLRQRGRW--LVGLGRLGGC--LLGLGRRIGPGAR 658
>gi|109689720 acyl-Coenzyme A binding domain containing 5 isoform 2
[Homo sapiens]
Length = 490
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 104 PRGEGRQVQLAGHLGEVAAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGP 163
P G G G++ VA GEV G +G+ + R RGG RRG
Sbjct: 313 PPGNGN----IGNMQVVAVEGKGEVKHGGEDGR--NNSGAPHREKRGGETDEFSNVRRGR 366
Query: 164 GDRVPGC--GWMGRVPGLGGEDARCGGGPRGRGAHISRIPLV 203
G R+ G GR G GG+ R G RG+ +I LV
Sbjct: 367 GHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQIALV 408
>gi|203098629 acyl-Coenzyme A binding domain containing 5 isoform 1
[Homo sapiens]
Length = 525
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 104 PRGEGRQVQLAGHLGEVAAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGP 163
P G G G++ VA GEV G +G+ + R RGG RRG
Sbjct: 348 PPGNGN----IGNMQVVAVEGKGEVKHGGEDGR--NNSGAPHREKRGGETDEFSNVRRGR 401
Query: 164 GDRVPGC--GWMGRVPGLGGEDARCGGGPRGRGAHISRIPLV 203
G R+ G GR G GG+ R G RG+ +I LV
Sbjct: 402 GHRMQHLSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQIALV 443
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 99 RGKASPRGEGRQVQLAGHLGEVAAVAAGEVVAGLAEGQVDHRWHRAERRPRGGAGGSRGL 158
RG + ++ AG AA E AE + R RA+ R GG + G+
Sbjct: 654 RGSGGKQPRWQKPAAAGSESSAAAAVGQE-----AEARKKPRRRRAKSRGDGGQNAAVGI 708
Query: 159 ---QRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRGA 195
QRRG R +G+ G GG +R GG + RG+
Sbjct: 709 NPWQRRGKKPR------LGKSRGGGGAKSRGSGGAKSRGS 742
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 34.3 bits (77), Expect = 0.15
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 99 RGKASPRGEGRQVQL-AGHLGEVAAVAAGEVV--------AGLAEGQVDHRWHRAERRPR 149
R A+PRG G + A G AA GE +GL++ + RA RPR
Sbjct: 108 RAGAAPRGPGGPARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQP--RAAVRPR 165
Query: 150 GGAGGSRG---LQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRG 194
G RG + RGPG + GLGG C GP RG
Sbjct: 166 RGGALPRGTGAVPERGPGTEPQRGRRCSDLQGLGGRLRGCPAGPSARG 213
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GE GG AH +P APL+ L D LH + VP P + R+ G
Sbjct: 233 GEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFM----PRRLTGRS 288
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCIL 271
R+ S Q P P Y+P++L VL +L
Sbjct: 289 RYRSQQPIPPPP------YHPSLLPYVLSML 313
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GE GG AH +P APL+ L D LH + VP P + R+ G
Sbjct: 233 GEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFM----PRRLTGRS 288
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCIL 271
R+ S Q P P Y+P++L VL +L
Sbjct: 289 RYRSQQPIPPPP------YHPSLLPYVLSML 313
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GE GG AH +P APL+ L D LH + VP P + R+ G
Sbjct: 266 GEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFM----PRRLTGRS 321
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCIL 271
R+ S Q P P Y+P++L VL +L
Sbjct: 322 RYRSQQPIPPPP------YHPSLLPYVLSML 346
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GE GG AH +P APL+ L D LH + VP P + R+ G
Sbjct: 233 GEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFM----PRRLTGRS 288
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCIL 271
R+ S Q P P Y+P++L VL +L
Sbjct: 289 RYRSQQPIPPPP------YHPSLLPYVLSML 313
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 181 GEDARCGGGPRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQ 240
GE GG AH +P APL+ L D LH + VP P + R+ G
Sbjct: 316 GEHLPVGGFTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFM----PRRLTGRS 371
Query: 241 RHLSPQLPPHGPQRKKRSYNPAILLDVLCIL 271
R+ S Q P P Y+P++L VL +L
Sbjct: 372 RYRSQQPIPPPP------YHPSLLPYVLSML 396
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 19/69 (27%)
Query: 143 RAERRPRGGAGGSRGLQRRGPGDRVPGCGW-----MGRVPGLGGEDARCGGGPRGRGAHI 197
RAE +PRGG GG GCGW G G E+ G PR RG
Sbjct: 25 RAEPQPRGGRGG--------------GCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAG 70
Query: 198 SRIPLVAPL 206
+ P PL
Sbjct: 71 DKEPRAGPL 79
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 33.5 bits (75), Expect = 0.25
Identities = 44/152 (28%), Positives = 56/152 (36%), Gaps = 26/152 (17%)
Query: 130 AGLAEGQVDHRWHRAERRPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGG 189
AG AE Q RW R GA G GL GPG G G G GG
Sbjct: 62 AGAAEDQELQRW-------RQGASGIAGLA--GPG------GGSGAAAGAGGRALELAEA 106
Query: 190 PRGRGAHISRIPLVAPLRQLIMDVLHHYLPVIVPCSPSVRHPSQRKSNGGQRHLSPQLPP 249
R R LV+ L ++ + H + + + R S + +GG L
Sbjct: 107 RRRLLEVEGRRRLVSELESRVLQL--HRVFLAAELRLAHRAESLSRLSGGVAQAELYLAA 164
Query: 250 HG------PQRKKRSYNPAILLDVLCILGRGG 275
HG P+R +R PA+L LG GG
Sbjct: 165 HGSRLKKGPRRGRRGRPPALLASA---LGLGG 193
>gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 102 ASPRGEGRQVQLAGHLGEVAAVAAGEVV--------AGLAEGQVDHRWHRAERRPRGGAG 153
A+P + R QL + E AA + + + +V W R + GAG
Sbjct: 311 AAPSQDERVQQLRRRISERAAERSRQAALLHVSAPRTARPKPRVSPDWWEEPGRLKAGAG 370
Query: 154 GSRGLQRRGPGDRVPGCGWMG-RVPGLGGEDARCGGGPRG 192
+R G G VPG GW G RV G A G G G
Sbjct: 371 WGWRARRAGTG--VPGRGWRGDRVRSAAGRYAAAGAGGGG 408
>gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 102 ASPRGEGRQVQLAGHLGEVAAVAAGEVV--------AGLAEGQVDHRWHRAERRPRGGAG 153
A+P + R QL + E AA + + + +V W R + GAG
Sbjct: 311 AAPSQDERVQQLRRRISERAAERSRQAALLHVSAPRTARPKPRVSPDWWEEPGRLKAGAG 370
Query: 154 GSRGLQRRGPGDRVPGCGWMG-RVPGLGGEDARCGGGPRG 192
+R G G VPG GW G RV G A G G G
Sbjct: 371 WGWRARRAGTG--VPGRGWRGDRVRSAAGRYAAAGAGGGG 408
>gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 102 ASPRGEGRQVQLAGHLGEVAAVAAGEVV--------AGLAEGQVDHRWHRAERRPRGGAG 153
A+P + R QL + E AA + + + +V W R + GAG
Sbjct: 311 AAPSQDERVQQLRRRISERAAERSRQAALLHVSAPRTARPKPRVSPDWWEEPGRLKAGAG 370
Query: 154 GSRGLQRRGPGDRVPGCGWMG-RVPGLGGEDARCGGGPRG 192
+R G G VPG GW G RV G A G G G
Sbjct: 371 WGWRARRAGTG--VPGRGWRGDRVRSAAGRYAAAGAGGGG 408
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 33.1 bits (74), Expect = 0.33
Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 7/118 (5%)
Query: 82 GHNPPPVHPVPEELLHHRGKASPRGEGRQVQLAGHLGEVAAVAAGEVV--AGL--AEGQV 137
G N P P L G+A +GE + AG LGE V AG+ G+
Sbjct: 322 GRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEA 381
Query: 138 DHRWHRAERRPRG--GAGGSRGLQRRGPGDRVPGC-GWMGRVPGLGGEDARCGGGPRG 192
HR P+G GA G RG Q + PG G G +G GP+G
Sbjct: 382 GHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKG 439
>gi|117320550 hypothetical protein LOC400566 [Homo sapiens]
Length = 433
Score = 33.1 bits (74), Expect = 0.33
Identities = 29/66 (43%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 143 RAERRPRGGAG-----GSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGG--GPRGRGA 195
RAE R G G G GLQ G DR G G MG G E+ R GG GPRG
Sbjct: 11 RAESRRLVGIGPRAPPGRVGLQPSGRLDRRGGAGTMGYKDNDGEEEEREGGAAGPRG--- 67
Query: 196 HISRIP 201
SR+P
Sbjct: 68 --SRLP 71
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.42
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 140 RWHRAERRPRGGAGGSRGLQRRGPGDRVPG-CGWM--GRVPGLGGEDARCGGGPRGRGAH 196
RW GGAGG+ G GPG PG GW+ GR G GG R G GP G A+
Sbjct: 135 RWATTPPPLAGGAGGAGGAGG-GPG---PGQAGWLEGGRTGGAGG---RGGEGPGGSTAY 187
Query: 197 I 197
+
Sbjct: 188 V 188
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.42
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 100 GKASPRGEGRQVQLAGHLGEVAAVAAGEVVA-----------GLAEGQVDHRWHRAE--R 146
G+ G+G AG +GE AV GE A G EG AE R
Sbjct: 113 GEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEAR 172
Query: 147 RPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRGAHISRIPLVAPL 206
GA G GP G G V G G G RG +++R V P
Sbjct: 173 ESDEGAAGD-----TGPAGEAEAVGEAGAV-GEAGAAGEAGAVGEARGTNVTR-AWVQPR 225
Query: 207 RQLIMDVLHH 216
R + VL +
Sbjct: 226 RCTLQAVLEN 235
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.42
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 100 GKASPRGEGRQVQLAGHLGEVAAVAAGEVVA-----------GLAEGQVDHRWHRAE--R 146
G+ G+G AG +GE AV GE A G EG AE R
Sbjct: 113 GEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEAR 172
Query: 147 RPRGGAGGSRGLQRRGPGDRVPGCGWMGRVPGLGGEDARCGGGPRGRGAHISRIPLVAPL 206
GA G GP G G V G G G RG +++R V P
Sbjct: 173 ESDEGAAGD-----TGPAGEAEAVGEAGAV-GEAGAAGEAGAVGEARGTNVTR-AWVQPR 225
Query: 207 RQLIMDVLHH 216
R + VL +
Sbjct: 226 RCTLQAVLEN 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,027,363
Number of Sequences: 37866
Number of extensions: 962499
Number of successful extensions: 3719
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 3488
Number of HSP's gapped (non-prelim): 370
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.