Guide to the Human Genome
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Name: LOC100294369 Sequence: fasta or formatted (312aa) NCBI GI: 239751578
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         20           2
 C cysteine            1.6          5           1
 D aspartate           3.2         10           1
 E glutamate           4.8         15           2
 F phenylalanine       1.9          6           1
 G glycine            12.5         39           3
 H histidine           7.1         22           2
 I isoleucine          3.5         11           1
 K lysine              2.6          8           2
 L leucine             9.0         28           2
 M methionine          1.6          5           1
 N asparagine          1.6          5           1
 P proline            10.6         33           3
 Q glutamine           5.1         16           1
 R arginine            9.9         31           2
 S serine              5.8         18           2
 T threonine           1.6          5           1
 V valine              8.7         27           2
 W tryptophan          1.0          3           1
 Y tyrosine            1.6          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293906          1.000   PREDICTED: hypothetical protein 
LOC100287255          1.000   PREDICTED: hypothetical protein XP_002343655 
C20orf160             0.022   hypothetical protein LOC140706 
TRIO                  0.022   triple functional domain (PTPRF interacting) 
FGF2                  0.022   fibroblast growth factor 2 
MBD2                  0.022   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.022   methyl-CpG binding domain protein 2 isoform 1 
COL5A2                0.019   alpha 2 type V collagen preproprotein 
LOC100134283          0.016   PREDICTED: hypothetical protein 
LOC100289978          0.016   PREDICTED: hypothetical protein XP_002348035 
ACBD5                 0.016   acyl-Coenzyme A binding domain containing 5 isoform...
ACBD5                 0.016   acyl-Coenzyme A binding domain containing 5 isoform...
LOC100292370          0.014   PREDICTED: hypothetical protein 
ZNF716                0.014   PREDICTED: zinc finger protein 716 
RNF38                 0.014   ring finger protein 38 isoform 2 
RNF38                 0.014   ring finger protein 38 isoform 2 
RNF38                 0.014   ring finger protein 38 isoform 3 
RNF38                 0.014   ring finger protein 38 isoform 2 
RNF38                 0.014   ring finger protein 38 isoform 1 
MARCH9                0.014   membrane-associated RING-CH protein IX 
TRNP1                 0.013   TMF regulated nuclear protein 
LOC402160             0.013   PREDICTED: similar to hCG18094 
LOC402160             0.013   PREDICTED: similar to hCG18094 
LOC402160             0.013   PREDICTED: similar to hCG18094 
COL9A3                0.013   alpha 3 type IX collagen 
C17orf97              0.013   hypothetical protein LOC400566 
LOC729956             0.013   hypothetical protein LOC729956 
LOC100128960          0.013   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.013   PREDICTED: similar to Putative paraneoplastic antig...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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